GenBank-Updates@genbank.bio.net (08/22/90)
LOCUS DRVROUGHA 7589 bp ds-DNA INV 22-AUG-1990
DEFINITION Drosophila virilis rough gene.
ACCESSION M35372
KEYWORDS DNA-binding protein; homeo domain protein; homeobox;
photoreceptor development; rough gene.
SOURCE D.virilis DNA.
ORGANISM Drosophila virilis
Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae.
REFERENCE 1 (bases 1 to 7589)
AUTHORS Heberlein,U. and Rubin,G.M.
TITLE Structural and functional comparison of the drosophila virilis and
Drosophila melanogaster rough genes
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 5916-5920 (1990)
STANDARD full staff_entry
COMMENT Draft entry and computer-readable sequence for [1] kindly submitted
by G.M.Rubin, 19-JUN-1990, for release after publication.
FEATURES from to/span description
pept 1249 1708 rough protein, exon 1
6003 6237 rough protein, exon 2
6457 6781 rough protein, exon 3
IVS 1709 6002 intron A
IVS 6238 6456 intron A
pre-msg 1193 > 6781 rough protein mRNA and introns
site 6032 6214 homeobox
BASE COUNT 2378 a 1494 c 1607 g 2110 t
ORIGIN
1 gtacccgggg atcctctaga gtcgacctta acgaattcgt gcacttcccg gaactcgaca
61 tcgttgagca tcagggtcca gacgttgtcg cagaagcgat aggtgttcag ttttcccgct
121 ttgaatgtaa cgcgagcttt aaccctctga ttaagggcgt tgttaatgct cttgtcaaac
181 tgcagcagca ccttaaatgc caatgcgggc gttatttgtc catactgcaa atatgtttaa
241 agttaatctg acgtcaaaat cgacatttta cataaatagc aaatgaagta acaaaagggg
301 ccacagcaaa tgcaagccaa tttaacaatt gttgacgatg tgaaaatgca aaaatttgac
361 aagacttcgc ctgagtctgc gacgcagctg ctgctgcggc ctgttgggaa ttcgttttgt
421 atcgggcacg tagcttacct gaattagttc gtcaaggctc tcctgtagtg tattgccaag
481 cgtagtgttg cgatataatt gataagacat gtttgagtcg ctaaattctg gaaattaaaa
541 acttatttta ttgagcagcc aaaatgtatt gtagcgatgt cagtaaatgg ctatactaaa
601 atattgtatc gatagcttag atattacgat atgcgatata tgaaactagc tcgatatatc
661 gatatatttt atgcgatgta ttgtcaaatg ctggcattaa caatttctaa caattttaat
721 acgcttatca aattgtattt tatttatgtc tattttcgaa tatatataaa tgtaccagta
781 gataggtaat taaaacgata aattgagaac atacaaatta aaactcgata agagtaagcc
841 aaaaatggag ttacgtatca attagctttc aagcgcgctg tgctgctggc aacaatagct
901 gccagctata gctcacacgt acgaagtggg cggcgcttat cctttttgct acccttggag
961 gatactttga agcggaagtt gactgagggt tgcactgcag ctgcaaccaa tcagcgcaac
1021 gcgttgcttg cttcaggtgt ggcgccaata tttttttatt aaccacaatt ttaagcacct
1081 tcttgtcgat tttaatgcgg cacataattt gtgacgcgca agataagcgc aaacgcttga
1141 ccaagacaag cgaccggtca gtttcgaagt cggaagtaac gccagtttca gtcactcgtc
1201 gattatccaa gtgttaagtt tagccggtgc tcgatccgtg cgcccaaaat gctgcagcaa
1261 aacccatcat cgccgctcca tgcggaaaag tttatcaaat cttcgaattc cacgccgaca
1321 gcgacacccg cacccgcatc cgcaaccgca accgcaccca tgcacacggt gcttgcgacg
1381 ccgcagcgtc cgtcatctcc gcgccaattc ttcgagcgtc tttacgggca tctcgagacg
1441 cggacgcaca acagtgagag cggcgacatt gatgtgggca cacacgccga gacgccctac
1501 cagagcgacg gaggcagcgc atcctcgccg gacatttcga taagtgatga gcgcgtctca
1561 ttagtcagtt ttccgtcata tgaattgcat gcgcctacgc cggattacag cgcgtacggc
1621 gccattgcga acgcaacttt accgccggct ctatcatttc cggccttttc ggctgatccg
1681 catattaacg ccggattttc agcattttgt gagtacatcc gagcaagatt aaacacaaaa
1741 atcgacctac aactcatttt acaaatattt aatacgtatc caactatttt agttccagta
1801 aagattgaga aagagttagt gaaaagtttt ttatagaaaa tttagagcgg aatagagata
1861 tttgcagatc tggagtgcac atatatctat atagcatata tattaattat tgtgggattc
1921 tttataatcg catataaaaa cactctatgg taataatatg aaagcttttg tgttttgatc
1981 aaaacgtttt aggcaaaagt aaatctaatg taaagagttt ggttggaata cttggaaaga
2041 gtccttgttc ctagaatctc atctatatag cagttatata atatgaaatt ctgtataatg
2101 aaaaacctga ttgataagtc gttgccatat aggaacctac accgatctct cctatagcag
2161 ctagctatat gataagcttg tcccatgttc atagaaattt ccctatgagg atcataatgg
2221 aactactaga actatcaagt taccctaata taaaaatagg tttccaactt ttcgatcaaa
2281 ctttcctata gcagctatat gatatggcta gccgatgttg ataagatttt gcatacatat
2341 agggcacgtt cttaaactta taaatgccaa gtttaggtag gatatcttct gcttttggtc
2401 cgatcgttcc tatggcaact gtataatata gtggtccgat ccgcccagtt ccgactgaga
2461 ggcaagttcg catagaaaca gacggaccga cttggctgtt ggcactgatc aggaatatat
2521 atactttatg tggtcgaagt tataataccc tctataatac cctacataac aaggaataaa
2581 aaaactttct gaatacgatt cgctcatccc aatgaaatga aagatgttaa aaagatttac
2641 taaaatctta aatgatagaa aaacaacggt cgtagcttta agatttggta cattacccaa
2701 aaagcagtca aaaatacttc taagggtgac ccagaaaata agtttaatta aagaaaaagg
2761 gagatactcc agtttaacac ttaaccatta tctaatcata ttttataatt gaaatttcgg
2821 caattcttag tagaatcaag aattttcatt cggatattat agggtattta attattaaaa
2881 aacggcttta gatagatttg ggaaattaat tgccttaatt gaacctggaa tatttctata
2941 tacagccgat tttcaactca ccaactgtgt tgtatagtgt atttatatgg tcgagcgaaa
3001 cgttaagcat atcaatagac aagacacctt cgatgacatg tcattaagct tgtcttgcaa
3061 gctgacgcca gggcatagat cggattgcag cctattccct taacatgtcc gattgattgt
3121 tgttgatata gatgttgttc ctttcagatc agttaaaatt aatttggtta tggcataatc
3181 gaattttgct aatgtatttg aatacaattt gttgctacag tttggattat ttgggtttct
3241 ttttcgcctc ctctgcgctg tctcgcagct gtttcaagtt gcgcagctcc atgctcaaaa
3301 acatacgcaa attgggatct ttgatcttgg ccagaacaat ctcacgggca cgctcatcgt
3361 tgtcccccag cagcttggcc acagtctgcg cgtactccac ccagacgcaa ttggggcaac
3421 cggacatgca gcaggtggtg ggttccgggg gcaactgtcg gtttgccaga cattagacga
3481 gctatgtttc tccatttgca acacttacca caatatccga ggcgtctttg ttcgccagat
3541 gtctggcctg gaaggctgcg gctaattgga ttgtcgcccg gccaagcagg cagcgctggc
3601 agccgaagca cagaggagca cgcattctga ttggatctgt aatatggtca gaaatgggca
3661 aatgttaaat gcaacgggat tttcacacgc tggcgcatgc aggtgcaaga gtttaacgaa
3721 agtaggagca aaaaaaaaat tagttccgca ggaactgcgt aaaaagtagc caggctatta
3781 aatatcctgg cacttgtcgg caaatccttg atgaaaaaaa aaaaaagtat gcaaaagcaa
3841 agaaaagaaa tgctaaagaa aaccgaaaag tcgagagaga aagggcttta agaagaagaa
3901 agcaaaaaaa aaacaagaaa ttaacaaaat attaaaacgc attcagccgt aaaaattttc
3961 atttacttgc ggtaatctcg cttaaaggtc gcgcgggaga gaaggtacgc aaattgagaa
4021 tggacaatgc cagaagaaga ttgataaggg agagatgata ttacaggcca catcgcgatt
4081 aattggcacc cccaataaat atgccacttt gagagttagc taaaaaaaaa aaggaagaag
4141 cagaagagat gatgaaaaaa cgcattgcta aaaaattaac attgtaattg agcttaacag
4201 gaaacctaaa aaacacacac acacacacac acacaaacac aaaggacact tgtcgtatcg
4261 aatttcacac gtgatttaaa aaaaatatat atatgtatgt atatatgtgc atataagccg
4321 aaagcagagc ttaaggctct tgtgagttag tcaggcggcg ggtaatcagg cgagaactag
4381 agattagcaa cccctacccc cgcactaccc ccgctctacc accacactca cacaaaaagt
4441 cgcgcactag cggaaacttt acagcttcgc aagaggcaag gcagcagaga gtgagagtat
4501 cagagcgaga gagacagaga gagagagaga gagcgtggag agtggagaga cggactggaa
4561 caattaagcg gtaatcagcg tacgcgaaca gacaatggga gttgagtacg catcgtgtga
4621 gcgggcgtgg ctgaatattg ttcgctcgaa tgacgtctac gtcacagcgc aatgcaaaca
4681 aatattcatt aggattgcgc tacaacgaag tgcagatgcc cttacaaacg aattgatcaa
4741 actgttgtcg atactctctt cgcttaaagc gctgcgatac ttattttcga aatttacaaa
4801 aaatatatac aaaatatttt caaaattcca ttaaaatgaa tcatttcgaa tacattttaa
4861 tatttgtaca ttattgtctt ttgctgcggc tctcattttc gaagtctaca aaacactaaa
4921 atcttttttt gtattcaatt aaacgaatta tatatgttta attatgttct ttgcgatcct
4981 cattttcgaa agatacaaaa tactaaaaca tttgttgtat taaatcaaaa ttcattgttt
5041 tttgtttttg taatatgtat taaattatct attgttgtga aaaattgaag tacgactcga
5101 cgtttcgata gatattaaaa aatgtttagg acaaaataaa attaaaaatg ttaatatgag
5161 catattgaaa attcgctcta aagaaacctt cgacctaaac aaatgcttca ttgaaaccaa
5221 atatgttgta gatttttttt ctaagtcaac gtaatatata tattttttta atatgttttt
5281 atatattttg acgaaagttt tcaagctgaa attgtcccga aattgaatac aaccaatggc
5341 ctcaaaaaaa catttatttt aaaatagttt ctattatttt aatatataaa atgtattctc
5401 catttatttc ttaagcaaaa agtgagaaat gaattattag caaacttgta tgcgaaatta
5461 aaaatggcga accgtatgaa aaaactaata ataccctttc aagaagtgta tagttatgat
5521 gactgttcgc agcataacaa aaataacaat gggaggatgg gagacagctg ttggtattgt
5581 tgaaagtttc ccggctcaga ttgcccaaag tatgaattgc tgggacgcag gatgggagtg
5641 gagagggggg taaagggggc acggcactga tggacagtct aggaacacgt gtaaaatgca
5701 ttttaatgtg cgccataaac gcgatcacaa acatcgttta gcagtagaaa aggggcgggg
5761 tgggcaacag cctggttaat tatttgttta acttgttcgc acgcaaggac actaagccgt
5821 acgctgatat atgtgcacgt gcaggcgggt ctgagggtaa ttttatggtt tattaatgtg
5881 gcatttggta cgctctaaca tctccattgt gtgtgcgtga tatgcccaat gatatgccta
5941 atcttaagcc attgttgttg tggtctatgc aacaatttga tgatgtgctc tcgatttggc
6001 agtggctcga cgtcgccgca aggagggacg ccagagacgg cagcgcacca cgttcagcac
6061 ggagcaaaca ctgcgactgg aggtggagtt ccatcggaac gagtatatat cgagaagtcg
6121 tcgctttgag ctggccgaga cgctgcgctt gtcggagaca caaatcaaaa tctggtttca
6181 aaatcgtcgc gccaaggata aacgcatcga gaaggcgcaa atcgatcagc attacaggta
6241 agccaacaga gtggagcagg agtagcaatt cagggaaatg tcacaatata attgatgtac
6301 tcccattaaa ttaacacgaa attaatttaa cgacatttac ggcccaatta gacaaatgtc
6361 tgcgcgtccg gctttgggtt tcgggctcgg gctcgagctc gggctcggtt aatgttcgac
6421 attttttatg taatgcacga tactatcaat ttgcaggaac tttgtcgtgg ccaatggttt
6481 tatgagcacc attatgggcc agacgagtta cgcgacgtct gcgccgggga ccagctctgc
6541 ggcggcgacg gcggcggcca tgctaggcag cagctactat gcagcgacgc cggcgctcgt
6601 gccgtcaacg ctcgtaaata atgcgcatcg tgcggatgtt aattatgttg acattgaggc
6661 acaacaccaa caacaacaac aacaccacca agtgcatcct gaccaacagc agcagcagca
6721 gcagcagcag cagcgacgca gccgttttgt gcctccgcca acgcttatta attcgtgtta
6781 agtgaattct tgttttaagc tgatttaaat gcgtcaaata aactaagtta aatgaaaaaa
6841 aacgttttta gcttttaaat agtcaaaact tgcatcactg acggctgctt ataactatct
6901 atgacaacag tttaattggc ggtctaacgc gcactgtgac acttacctta gttcactgca
6961 tttgttgttg cagcaactgc tgggtttttt tttttttttg gtttttgttt ttaatccaac
7021 tgagctctta atttagttaa atattataca atttgactaa acaacgtaat aataacaata
7081 acaaaccagg gctgccaaag gtctgtgcgt caaaataata tatcgaaggc aagcaactta
7141 tcgatagtca ggtagtacga tgtatattgc acatccctga aattttcttc gcgtgcgtgt
7201 ctgacgagct acagctcttt gcattttttt ttttgtaaat ttaattaaac gtgcgccaaa
7261 tatggcaaac acaccgcaag tagtcaaatt agaggataac gccgaagagc ccgagatatt
7321 tgaaatcaaa gacgaagatg taagtatcaa taacaattgc ggcgtccgca ctactcattc
7381 tactgcgtgc accttgtggt acataaaaaa aaaaaaaacc tgcgctgttt ctgacaaacg
7441 aacccatgca tatgcacatg cacacatgcg aatatatatt tgtgtttcat ttggcgtgca
7501 ggacatttgc gaattggagc acttgcgcaa gctgtttatt ggcggcctgg cgccctacac
7561 cacagaggag ggcctcaaag tgttctatt
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