GenBank-Updates@genbank.bio.net (08/24/90)
LOCUS CPVRPO13A 4510 bp ds-DNA VRL 24-AUG-1990 DEFINITION Cowpox virus rpo132 gene encoding RNA polymerase, complete cds. ACCESSION M26173 KEYWORDS RNA polymerase. SOURCE Cowpox virus (strain Brighton red) DNA. ORGANISM Cowpox virus Viridae; ds-DNA enveloped viruses; Poxviridae; Orthopoxvirus. REFERENCE 1 (bases 1 to 4510) AUTHORS Patel,D.D. and Pickup,D.J. TITLE The second-largest subunit of the poxvirus RNA polymerase is similar to the corresponding subunits of procaryotic and eucaryotic RNA polymerases JOURNAL J. Virol. 63, 1076-1086 (1989) STANDARD full staff_entry COMMENT Draft entry and computer-readable copy of sequence [1] kindly provided by D.J.Pickup, 27-JUN-1990. FEATURES from to/span description pept 375 3869 rpo132 RNA polymerase (late) pept 399 3869 rpo132 RNA polymerase (early and late) pept > 4510 3847 (c) 160K gene RNA 393 4327 early transcript RNA 309 4327 early transcript binding 1077 1096 potential metal binding region BASE COUNT 1507 a 780 c 863 g 1360 t ORIGIN 1 tttaaagaag tagctaatat tgtaaaccac gtactcactg ctacggcatt agatgagaaa 61 ttattcctaa ttaagaaaat ggctgaacac gatgtttatg gagttagcaa tttcaaaata 121 gggatgttta acctgacatt tattaagtcg ttggatcata ccgttttccc ctctctgtta 181 gatgaggata gcaaaataaa gttttttaag gggaaaaagc tcaatattgt agcattacga 241 tctctggagg attgtataaa ttacgtgact aaatccgaga atatgataga aatgatgaag 301 gaaagatcga ctattttaaa tagcatagat atagaaacgg aatcggtaga tcgtctaaaa 361 gaattgcttc taaaatgaaa aaaaacactg attcagaaat ggatcaacga ctcgggtata 421 agtttttggt acctgatcct aaagccggag ttttttatag accgttacat ttccaatatg 481 tatcgtattc taattttata ttgcatcgat tgcatgaaat cttgaccgtc aagcggccac 541 tcttatcgtt taagaataat acagaacgaa ttatgataga aattagcaat gttaaagtga 601 ctcctccaga ttactcacct ataatcgcga gtattaaagg taagagttat gacgcattag 661 ccacgttcac tgtaaatatc tttaaagagg taatgaccaa agagggtata tccatcacta 721 aaataagtag ttatgaggga aaagattctc atttgataaa aattccgcta ctaataggat 781 acgggaataa aaatccactt gatacagcca agtatcttgt tcctaatgtc ataggtggag 841 tctttatcaa taaacaatct gtcgaaaaag taggaattaa tctagtagaa aagattacaa 901 catggccaaa atttagggtt gttaagccaa actcattcac tttctcgttt tcctccgtat 961 cccctcctaa tgtattaccg acaagatatc gccattacaa gatatctctg gatatatcac 1021 aattggaagc gtcgaatata tcatcgacaa agacatttat aacggtcaat attgttttgc 1081 tatctcaata tttatctaga gtgagtctag aattcattag acgtagttta tcatatgata 1141 tgcctccaga agttgtctat ctagtaaacg cgataataga tagtgctaaa cgacttaccg 1201 aatctattac tgactttaat atcgatacat acattaatga cctggtggaa gccgaacaca 1261 ttaaacaaaa atctcagtta acgattaacg agttcaaata tgaaatgctg cataactttt 1321 tacctcatat gaactataca cccgatcaac taaagggatt ttatatgata tctttactaa 1381 gaaagtttct ctactgtatc taccacactt ctagatatcc ggatagagat tcgatggttt 1441 gtcatcgtat actaacatac ggcaaatatt ttgagacgtt ggcacatgat gaattagaga 1501 attacatagg caacatccga aacgatatca tgaacaatca caagaacaga ggcacttatg 1561 cggtaaacat tcatgtacta acaactcccg gacttaatca tgcattttct agtctattga 1621 gtggaaagtt caaaaagtca gacggtagtt atcgaacaca tcctcactat tcatggatgc 1681 agaatatttc tattcctaga agtgttggat tttatccgga tcaagtaaag atttcaaaga 1741 tgttttctgt cagaaaatac catccaagtc aatatcttta cttttgttca tcagacgttc 1801 cggaaagagg tcctcaggta ggtttagtat ctcaattgtc tgtcttgagt tccattacaa 1861 atatactaac gtctgagtat ttggatttgg aaaagaaaat ttgtgagtat atcagatcat 1921 attataaaga tgatataagt tactttgaaa caggatttcc aatcactata gaaaatgctc 1981 tagtcgcatc tcttaatcca aatatgatat gtgattttgt aactgacttt aggcgtagaa 2041 aacggatggg attcttcggt aacttggagg taggtattac tttagttagg gatcacatga 2101 atgaaattcg cattaatatt ggagcaggaa gattagtcag accattcttg gttgtggata 2161 acggagagct catgatggat gtgtgtccgg agttagaaag cagattagac gacatgacat 2221 tctctgacat tcagaaagag tttccgcatg tcatcgaaat ggtagatata gaacaattta 2281 cttttagtaa cgtatgtgaa tcggttcaaa aatttagaat gatgtcaaag gacgaaagaa 2341 agcaatacga tttatgtgac tttcctgccg aattcagaga tggatatgtg gcatcttcat 2401 tagtgggaat caatcacaat tctggaccca gagctattct tggatgtgct caagctaaac 2461 aagctatctc ttgtctgagc tcggatatac gaaataaaat agacaatgga attcatttga 2521 tgtatccaga gaggccaatc gtgattagta aggctttaga aacttcaaag attgcggcta 2581 attgcttcgg ccaacatgtt actatagcat taatgtcgta taaaggcatc aatcaagagg 2641 atggaattat catcaaaaaa caatttattc agagaggcgg tctcgatata gttaccgcaa 2701 agaaacatca agtagaaatt ccattggaaa actttaataa caaagaaaga gataggtcta 2761 atgcatattc gaaattagaa agtaatggat tagttagact gaatgctttc ttggaatccg 2821 gagacgctat ggcacgaaat atctcatcaa gaactctcga agatgatttt gctagagata 2881 atcagattag cttcgatgtt tccgagaaat ataccgatat gtacaaatct cgcgttgaac 2941 gagtgcaagt agaacttact gacaaagtta aggtgcgagt attaaccatg aaagaaagaa 3001 gacccattct aggagataaa ttcaccacta gaacgagtca aaagggaaca gtcgcgtata 3061 tcgcggatga aactgaactt ccatacgacg aaaatggtat cacgccagat gtcattatta 3121 attctacatc catcttctct agaaaaacta tatctatgtt gatagaagtt attttaacag 3181 ccgcatattc tgctaagccg tacaacaata agggagaaaa ccgacctgtc tgttttccta 3241 gtagtaacga aacatccatc gatacatata tgcaattcgc taaacaatgt tatgagcatt 3301 caaatccgaa attgtctgat gaagaattat cggataaaat cttttgtgaa aagattctct 3361 atgatcctga aacggataag ccttatgcat ccaaagtatt ttttggacca atttattact 3421 tgcgtctgag gcatttaact caggacaagg caaccgttag atgtagaggt aaaaagacga 3481 agctcattag acaggcaaat gagggacgaa aacgtggagg aggtatcaag ttcggagaaa 3541 tggagagaga ctgtttaata gcgcatggtg cagccaatac tattacagaa gttttgaaag 3601 attcggaaga agattatcaa gatgtgtatg tttgtgaaaa ttgtggagac atagcagcac 3661 aaatcaaagg tattaataca tgtcttagat gttcaaaact taatctctct cctctcttaa 3721 caaaaattga taccacgcac gtatctaaag tatttcttac tcaaatgaat gccagaggcg 3781 taaaagtcaa attagatttc gaacgaagac ctccttcgtt ttataaacca ttagataaag 3841 ttgatctcaa accgtctttt ctggcataat attgtttagt agatactcat caatatcatc 3901 aagtttatca agatcatcaa gataagctaa ttcactaaac acatttttgg attcggtatt 3961 gttactcgca gaatagagtt cgctataatc ctgatattcg gaaatctgtg gagtttcagg 4021 ttttggtgga ggtgtaacag ctacttgaga taccgaagtc tgatattcag aaagctgtgg 4081 atgttctggt tcggcatcca ccgatggtgt tacaccacta ctaattggtt cagtaacgtc 4141 ggacgatgga ggcaccactt ctacaggttt tggttctgta tcctcagtcg tcaacggttc 4201 tacttcaatg cgaggaaatg tataatttgg taatggtttc tcgtctggat ctgaagaaga 4261 ggtaagatat ctactagaaa gataccgatc acgttctagt tctcttttgt agaacttaac 4321 tttttctttc tccgcatcta gttgatattc caacctcttc acgttactac gttcagattc 4381 caattcacgt tcgcatgggt tacctccgca gtttttacga gcgatttcac gttccagatc 4441 acgttcagcc ttcatgcgtc tctccttctc tctatcgagt ttatcagcgc agtctttctg 4501 aagacgatcg //