GenBank-Updates@genbank.bio.net (08/24/90)
LOCUS CPVRPO13A 4510 bp ds-DNA VRL 24-AUG-1990
DEFINITION Cowpox virus rpo132 gene encoding RNA polymerase, complete cds.
ACCESSION M26173
KEYWORDS RNA polymerase.
SOURCE Cowpox virus (strain Brighton red) DNA.
ORGANISM Cowpox virus
Viridae; ds-DNA enveloped viruses; Poxviridae; Orthopoxvirus.
REFERENCE 1 (bases 1 to 4510)
AUTHORS Patel,D.D. and Pickup,D.J.
TITLE The second-largest subunit of the poxvirus RNA polymerase is
similar to the corresponding subunits of procaryotic and eucaryotic
RNA polymerases
JOURNAL J. Virol. 63, 1076-1086 (1989)
STANDARD full staff_entry
COMMENT Draft entry and computer-readable copy of sequence [1] kindly
provided by D.J.Pickup, 27-JUN-1990.
FEATURES from to/span description
pept 375 3869 rpo132 RNA polymerase (late)
pept 399 3869 rpo132 RNA polymerase (early and late)
pept > 4510 3847 (c) 160K gene
RNA 393 4327 early transcript
RNA 309 4327 early transcript
binding 1077 1096 potential metal binding region
BASE COUNT 1507 a 780 c 863 g 1360 t
ORIGIN
1 tttaaagaag tagctaatat tgtaaaccac gtactcactg ctacggcatt agatgagaaa
61 ttattcctaa ttaagaaaat ggctgaacac gatgtttatg gagttagcaa tttcaaaata
121 gggatgttta acctgacatt tattaagtcg ttggatcata ccgttttccc ctctctgtta
181 gatgaggata gcaaaataaa gttttttaag gggaaaaagc tcaatattgt agcattacga
241 tctctggagg attgtataaa ttacgtgact aaatccgaga atatgataga aatgatgaag
301 gaaagatcga ctattttaaa tagcatagat atagaaacgg aatcggtaga tcgtctaaaa
361 gaattgcttc taaaatgaaa aaaaacactg attcagaaat ggatcaacga ctcgggtata
421 agtttttggt acctgatcct aaagccggag ttttttatag accgttacat ttccaatatg
481 tatcgtattc taattttata ttgcatcgat tgcatgaaat cttgaccgtc aagcggccac
541 tcttatcgtt taagaataat acagaacgaa ttatgataga aattagcaat gttaaagtga
601 ctcctccaga ttactcacct ataatcgcga gtattaaagg taagagttat gacgcattag
661 ccacgttcac tgtaaatatc tttaaagagg taatgaccaa agagggtata tccatcacta
721 aaataagtag ttatgaggga aaagattctc atttgataaa aattccgcta ctaataggat
781 acgggaataa aaatccactt gatacagcca agtatcttgt tcctaatgtc ataggtggag
841 tctttatcaa taaacaatct gtcgaaaaag taggaattaa tctagtagaa aagattacaa
901 catggccaaa atttagggtt gttaagccaa actcattcac tttctcgttt tcctccgtat
961 cccctcctaa tgtattaccg acaagatatc gccattacaa gatatctctg gatatatcac
1021 aattggaagc gtcgaatata tcatcgacaa agacatttat aacggtcaat attgttttgc
1081 tatctcaata tttatctaga gtgagtctag aattcattag acgtagttta tcatatgata
1141 tgcctccaga agttgtctat ctagtaaacg cgataataga tagtgctaaa cgacttaccg
1201 aatctattac tgactttaat atcgatacat acattaatga cctggtggaa gccgaacaca
1261 ttaaacaaaa atctcagtta acgattaacg agttcaaata tgaaatgctg cataactttt
1321 tacctcatat gaactataca cccgatcaac taaagggatt ttatatgata tctttactaa
1381 gaaagtttct ctactgtatc taccacactt ctagatatcc ggatagagat tcgatggttt
1441 gtcatcgtat actaacatac ggcaaatatt ttgagacgtt ggcacatgat gaattagaga
1501 attacatagg caacatccga aacgatatca tgaacaatca caagaacaga ggcacttatg
1561 cggtaaacat tcatgtacta acaactcccg gacttaatca tgcattttct agtctattga
1621 gtggaaagtt caaaaagtca gacggtagtt atcgaacaca tcctcactat tcatggatgc
1681 agaatatttc tattcctaga agtgttggat tttatccgga tcaagtaaag atttcaaaga
1741 tgttttctgt cagaaaatac catccaagtc aatatcttta cttttgttca tcagacgttc
1801 cggaaagagg tcctcaggta ggtttagtat ctcaattgtc tgtcttgagt tccattacaa
1861 atatactaac gtctgagtat ttggatttgg aaaagaaaat ttgtgagtat atcagatcat
1921 attataaaga tgatataagt tactttgaaa caggatttcc aatcactata gaaaatgctc
1981 tagtcgcatc tcttaatcca aatatgatat gtgattttgt aactgacttt aggcgtagaa
2041 aacggatggg attcttcggt aacttggagg taggtattac tttagttagg gatcacatga
2101 atgaaattcg cattaatatt ggagcaggaa gattagtcag accattcttg gttgtggata
2161 acggagagct catgatggat gtgtgtccgg agttagaaag cagattagac gacatgacat
2221 tctctgacat tcagaaagag tttccgcatg tcatcgaaat ggtagatata gaacaattta
2281 cttttagtaa cgtatgtgaa tcggttcaaa aatttagaat gatgtcaaag gacgaaagaa
2341 agcaatacga tttatgtgac tttcctgccg aattcagaga tggatatgtg gcatcttcat
2401 tagtgggaat caatcacaat tctggaccca gagctattct tggatgtgct caagctaaac
2461 aagctatctc ttgtctgagc tcggatatac gaaataaaat agacaatgga attcatttga
2521 tgtatccaga gaggccaatc gtgattagta aggctttaga aacttcaaag attgcggcta
2581 attgcttcgg ccaacatgtt actatagcat taatgtcgta taaaggcatc aatcaagagg
2641 atggaattat catcaaaaaa caatttattc agagaggcgg tctcgatata gttaccgcaa
2701 agaaacatca agtagaaatt ccattggaaa actttaataa caaagaaaga gataggtcta
2761 atgcatattc gaaattagaa agtaatggat tagttagact gaatgctttc ttggaatccg
2821 gagacgctat ggcacgaaat atctcatcaa gaactctcga agatgatttt gctagagata
2881 atcagattag cttcgatgtt tccgagaaat ataccgatat gtacaaatct cgcgttgaac
2941 gagtgcaagt agaacttact gacaaagtta aggtgcgagt attaaccatg aaagaaagaa
3001 gacccattct aggagataaa ttcaccacta gaacgagtca aaagggaaca gtcgcgtata
3061 tcgcggatga aactgaactt ccatacgacg aaaatggtat cacgccagat gtcattatta
3121 attctacatc catcttctct agaaaaacta tatctatgtt gatagaagtt attttaacag
3181 ccgcatattc tgctaagccg tacaacaata agggagaaaa ccgacctgtc tgttttccta
3241 gtagtaacga aacatccatc gatacatata tgcaattcgc taaacaatgt tatgagcatt
3301 caaatccgaa attgtctgat gaagaattat cggataaaat cttttgtgaa aagattctct
3361 atgatcctga aacggataag ccttatgcat ccaaagtatt ttttggacca atttattact
3421 tgcgtctgag gcatttaact caggacaagg caaccgttag atgtagaggt aaaaagacga
3481 agctcattag acaggcaaat gagggacgaa aacgtggagg aggtatcaag ttcggagaaa
3541 tggagagaga ctgtttaata gcgcatggtg cagccaatac tattacagaa gttttgaaag
3601 attcggaaga agattatcaa gatgtgtatg tttgtgaaaa ttgtggagac atagcagcac
3661 aaatcaaagg tattaataca tgtcttagat gttcaaaact taatctctct cctctcttaa
3721 caaaaattga taccacgcac gtatctaaag tatttcttac tcaaatgaat gccagaggcg
3781 taaaagtcaa attagatttc gaacgaagac ctccttcgtt ttataaacca ttagataaag
3841 ttgatctcaa accgtctttt ctggcataat attgtttagt agatactcat caatatcatc
3901 aagtttatca agatcatcaa gataagctaa ttcactaaac acatttttgg attcggtatt
3961 gttactcgca gaatagagtt cgctataatc ctgatattcg gaaatctgtg gagtttcagg
4021 ttttggtgga ggtgtaacag ctacttgaga taccgaagtc tgatattcag aaagctgtgg
4081 atgttctggt tcggcatcca ccgatggtgt tacaccacta ctaattggtt cagtaacgtc
4141 ggacgatgga ggcaccactt ctacaggttt tggttctgta tcctcagtcg tcaacggttc
4201 tacttcaatg cgaggaaatg tataatttgg taatggtttc tcgtctggat ctgaagaaga
4261 ggtaagatat ctactagaaa gataccgatc acgttctagt tctcttttgt agaacttaac
4321 tttttctttc tccgcatcta gttgatattc caacctcttc acgttactac gttcagattc
4381 caattcacgt tcgcatgggt tacctccgca gtttttacga gcgatttcac gttccagatc
4441 acgttcagcc ttcatgcgtc tctccttctc tctatcgagt ttatcagcgc agtctttctg
4501 aagacgatcg
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