GenBank-Updates@genbank.bio.net (08/24/90)
LOCUS ORFPRTPS 5003 bp ds-DNA VRL 24-AUG-1990 DEFINITION Orf virus homologue of retroviral pseudoprotease gene, complete cds. ACCESSION M30023 J04371 M37623 KEYWORDS pseudoprotease. SOURCE Orf virus (strain NZ2) DNA. ORGANISM Orf virus Viridae; ds-DNA enveloped viruses; Poxviridae; Parapoxvirus. REFERENCE 1 (bases 1 to 660) AUTHORS Mercer,A.A., Fraser,K.M., Stockwell,P.A. and Robinson,A.J. TITLE A homologue of retroviral pseudoproteases in the parapoxvirus, orf virus JOURNAL Virology 172, 665-668 (1989) STANDARD full staff_entry REFERENCE 2 (bases 579 to 5003) AUTHORS Fraser,M., Hill,D.F., Mercer,A.A. and Robinson,A.J. TITLE Sequence analysis of the inverted terminal repetition in the genome of the parapoxvirus, orf virus JOURNAL Virology 176, 379-389 (1990) STANDARD full staff_entry COMMENT Draft entry and clean copy of sequence [1] kindly submitted by A.A.Mercer 12-JUL-1989, and [2] by A.J.Robinson, 09-AUG-1990. FEATURES from to/span description pept 100 579 pseudoprotease homologue pept 663 878 ORF1 pept 1220 1885 ORF2 pept 2205 1150 (c) ORF5 pept 1735 2217 ORF3 pept 2042 1248 (c) ORF4 pept 3071 3343 ORF6 pept 4223 4558 ORF7 pept 4886 4416 (c) ORF8 BASE COUNT 1055 a 1554 c 1383 g 1011 t ORIGIN 1 gctggacttg cgccgcgcca tgctgacccg cccctgattt ttctggagaa agtgtaaatt 61 gtacaccccg tagtcgatcg gccgctcgcc accctagcca tggagttctg ccacacggaa 121 actcttcagg ttgttcgcct cagccaaaac gccactatac cagccagagg atctcctggt 181 gccgcaggat tagacctatg tagtgcatac gactgtgtca tcccttcgca ttgcagtcgc 241 gtagtattta ctgaccttct gataaagccc ccttctggtt gctacggacg catagcacca 301 cgttctggcc ttgcagtcaa acactttatc gacgtgggcg ctggcgtgat cgacgaagac 361 taccgaggca acgtcggagt ggtgctgttt aactttggaa acagtgactt tgaggttaag 421 aagggagaca ggatagctca gctaatatgc gaacgcatat cgtgcccagc agttcaagag 481 gttaactgct tggacaacac tgaccgcggc gactctggat ttggttctac tggatcgggt 541 gcttgtggtg gccgcgatac agcgtggtac atcagctaat caaaattgta aaatgtagct 601 tctttttatt cgagagtctc gcacagttgc gtagataaca ctaattacaa cacactttaa 661 tcatgcctgg agaaggacag tatcatatct acagtcacag tggaacttct aaagggtacg 721 caagtacacc cggaggtgct gtaaaacgtc caagttcagg aggtggaatt tggggacctt 781 tagagaaaag aatgtgtgtt ggaggtggta gtggtggtag taaaagctta agtggtggtg 841 ttaatggtgg tgttaacgga gggttaggca aaatataaca ttaaagtgtt tgctacttta 901 ttagctttat aacaaattat aactattttt atgattggtt attaaactca ttaccaacag 961 catgtccagt aacgataatg gtcgaaactt gcagtggaac taaacaacct agagaaacat 1021 ctgaaagttc taacaacaat ggatgggagc ttttggaacg gatttggaac aggtggtgga 1081 aaaagcactg tggttgcttt tggggcagga cacggtaacg gcagtggtgg agtgaacggt 1141 gttcaagttt taacacttta caccatcttc aaagtgaagt aggacgcgcc taatataacg 1201 tctctccttg tcgtcacaca tgactcctac ttctcgagaa tccttgctca ccaccctgct 1261 cgtggagcac ctggtccgcg cgcggcgccc tcgccggcgc tggtgcgcgc gctgctggcg 1321 gcgggcgcgc gcgcggcggg cccggacgcg gcggggcggc tgccgctggc ggcgctgctg 1381 cgcgcggcgc tgcgccgcgg cggcccgctg gacgcgcggc tgccgctgct gctggcgcgg 1441 cgcggggccg cggcctcggc gcgcgcccgc ggcggcgcgg ggcgctcggc ggcggggctg 1501 ctgcgcgcgg cgggcccgcg gtggcggcgg ctggccgcgg cgctggcggc cgcgggccgc 1561 gcggcggggt agcggcccgc ccgcccgggc gcccgccgca gcccttgccc cggaccaggc 1621 gccacggagc aaagtgaaaa aggaccgcct agcagtcgag accctcccgc cgcagccgcg 1681 gacaccccac acccgccttc cacccgccag acgccaacac cgcagccaac aagcatgcac 1741 ccctcgccgc gcaggctgct cggcgcgctc gcgctggtgg cgctgggctt cctcctcggc 1801 gggctcttcc gccccgcggc gccgccgctg ccggccgccc tcgtggaggc gggccccgtc 1861 cgcgcgaacg gctccgcctc ggtgacctgc ctgaccgtcg gcggcgacgg gcggcacatg 1921 gcggtggtcg cgcacggcgg cgggacgctc tcgccggtgt acccgctcgc cgccggcatg 1981 cacgcgacct tcgcctcgct gcgcaagggc gcgctgctgc tgaacgtcgc gaccgtgcac 2041 atctacgacg tgcgcgcgct cgggccggag ttcgagctga cctgcgtcgc ggtggcgggc 2101 ggctacaacg cggcctgggc ggccgcggcc cgcggccgag tggcgccgcc agctggcgcg 2161 gatgcaccgc tcggagctgt gaccctctcc ctcccggtct cccatccgtt tttgtaatcg 2221 gccttagtag attagaccag catcccgcgc ccttgtccgc cgcccttcgc tcgctcacga 2281 gcgaatcagt caattgatta tttttatcgc ccgcccgctc actccggtaa gggaacgcgg 2341 ttaacccact cacgagaaca agcgaccgcc actcacttga ggtaagggaa cggttacggt 2401 caactcactc acgagaacaa gttgactcac tcctcgaggt agagaacgag agaacaagtg 2461 accgtactca ctcacgagaa caagttgacg caccgctcac cgaggaaggg aacagagaac 2521 aagtaacagt aaccgttacc tcactcgcca ctcctcggaa taatagaacg agagaacgag 2581 agaacgagtt aaccgttgct cactcgctca ctcggtgtga gagaacaagt aacgttgctc 2641 actcgctcac tcggtgtgag agaacaagag aacgagtagc tgttgctaac tcaatcaccc 2701 ctcggagtaa gagaacaaga gcagtcaact acccactcag tcttggatga gaggcagagg 2761 acgagttgac gagttgaaca gttaatcctc actcactcag agcgagagag cgagagagtg 2821 gaggacgagt taacaagtca atcctcactc agagtgagag agtgagagag tggaggacga 2881 gttaatggtt aacagttatc accactcaga gtgagagcgg aggacgagtc aaccactcgc 2941 tcgcccactc cgagttagag agggaaccag tgcgagttaa cgcgcacacg agcgagagaa 3001 cgtaaactcg ctcgcgcgct cgctcggcta accgtcggcc tctcccaaaa ctcttcgtaa 3061 aactttcccg atgacagttc accctccaaa actttgtaaa actaaactgt tcggaggtcg 3121 gtctgctgcc tctctaactc tccgtaaaac gtttgtaaac tgtcggaggt cggtgacccg 3181 ctcaaccgtc cgcgaaaact tttcgcaggc agtgtctgcc tctctcggac tctccgcaaa 3241 cactttcgcg gaacctcgga gggtggtcga cctctctcca aactcttgca aaactttttc 3301 gcggaaccgt tggaggccag tcctccctcc aaactctttg taaaatcttt tcgaggccag 3361 tcctcctctc caaaacgttc cgcaaaatct ttgggaggtc ggcctctcct ctccagaacg 3421 ttccgtaaaa ctcttggagg ccgcccgcgg cacgcgaggc ggaggatccg aggtgtcgac 3481 ctccctcaaa aactttgtaa aaacttttta taaaactttc cgcggaacct cggagagtag 3541 gtcgacctct ctcaaaactc ttataaaact tttccgcgga accgttggaa ggtaggtcga 3601 cctctctcaa aactcttata aaacttttcc gcggaaccgt tggaaggtag gtcgacctct 3661 ctcaaaactc ttataaaact tttccgcgga accgttggag gcaggtcggc ctctcaaact 3721 ctttgcgaga actcttcgcg agaactcttc gataacttta ggaggtcagg tcgacctccc 3781 aaaacttttg cgagaactct ctgtaaaact ttaggaggtc ggtacctccc tcaaaacttt 3841 ttataaaact tttcgcggaa cctccggaga cgggccgccg ccgcgaccgc gggagcggag 3901 aggccgacct cccgagacgt tccgcgttac cgtcggggta ggcgtcctct cgagaacgcc 3961 aaaagacttc gtgcaaaaac ttttcggagg ggcgcggagg gcgggtcagc tcccgcgaac 4021 tcccgcagaa ccttttcgcg cgaccgcgaa ggccggccgc ctctcccaca ctctcaagag 4081 cttttcggag gagaggaagg gcaggtcgcc cccacctccg acgctttgta aaaacgttta 4141 cgcggaacct cggaggcagg tcgcctccct cgaaaactcc tcgcgaaacc tttaaaaact 4201 ttttgcgaaa acttttcgga ggatgtcgga gggcgggcgg ctcttccaaa cctccgcaga 4261 accttttcgc gcaaccgttg gaagacaggt cggcctctct cgaaaacttt taaaactttg 4321 taaacgcgtt ggcgggaccg tcgcgggaga gcggccgccc gcggcacgcg agaggaggaa 4381 ccgttggaag gcagtcggcc tctcccgaaa actttttata aaaacttttc cgcggaaccg 4441 ttggaggcag gtcggcctct ctcagagtct aaaaactttt tgcgggactc ggacggcgcg 4501 gtcacccgac cacctgactc ctgtctcacc cgtactactt ggacttctgt ttccctgact 4561 cccgactccc tgacctcccg actccctgac tcccgactcc ctgactcccg actccctgac 4621 tcccgactcc ctgactcccg actccctgac tcccgactcc ctgactcccg actccctgac 4681 tcccgactcc ctgactcccg actccctgac tcccgactcc ctgactcccg actccctgac 4741 tcccgactcc ctgactcccg actccctgac tcccgactcc ctgactcccg actccctgac 4801 tccctgactc cagagcgagg tctcgcggct gcggggtgcc gcctccgcgg agtcgcgttc 4861 ccgcggacgc ccgtcctcga aagcattcag cagttccagc ctctgccgta gctcctcccg 4921 caggaactcc tggtccgcgt tcgtcgcggc accgcggctc agccgccgcg ggagccggcc 4981 gccgcccgcg aagccgcgga tcc //