GenBank-Updates@genbank.bio.net (08/24/90)
LOCUS ORFPRTPS 5003 bp ds-DNA VRL 24-AUG-1990
DEFINITION Orf virus homologue of retroviral pseudoprotease gene, complete
cds.
ACCESSION M30023 J04371 M37623
KEYWORDS pseudoprotease.
SOURCE Orf virus (strain NZ2) DNA.
ORGANISM Orf virus
Viridae; ds-DNA enveloped viruses; Poxviridae; Parapoxvirus.
REFERENCE 1 (bases 1 to 660)
AUTHORS Mercer,A.A., Fraser,K.M., Stockwell,P.A. and Robinson,A.J.
TITLE A homologue of retroviral pseudoproteases in the parapoxvirus, orf
virus
JOURNAL Virology 172, 665-668 (1989)
STANDARD full staff_entry
REFERENCE 2 (bases 579 to 5003)
AUTHORS Fraser,M., Hill,D.F., Mercer,A.A. and Robinson,A.J.
TITLE Sequence analysis of the inverted terminal repetition in the genome
of the parapoxvirus, orf virus
JOURNAL Virology 176, 379-389 (1990)
STANDARD full staff_entry
COMMENT Draft entry and clean copy of sequence [1] kindly submitted by
A.A.Mercer 12-JUL-1989, and [2] by A.J.Robinson, 09-AUG-1990.
FEATURES from to/span description
pept 100 579 pseudoprotease homologue
pept 663 878 ORF1
pept 1220 1885 ORF2
pept 2205 1150 (c) ORF5
pept 1735 2217 ORF3
pept 2042 1248 (c) ORF4
pept 3071 3343 ORF6
pept 4223 4558 ORF7
pept 4886 4416 (c) ORF8
BASE COUNT 1055 a 1554 c 1383 g 1011 t
ORIGIN
1 gctggacttg cgccgcgcca tgctgacccg cccctgattt ttctggagaa agtgtaaatt
61 gtacaccccg tagtcgatcg gccgctcgcc accctagcca tggagttctg ccacacggaa
121 actcttcagg ttgttcgcct cagccaaaac gccactatac cagccagagg atctcctggt
181 gccgcaggat tagacctatg tagtgcatac gactgtgtca tcccttcgca ttgcagtcgc
241 gtagtattta ctgaccttct gataaagccc ccttctggtt gctacggacg catagcacca
301 cgttctggcc ttgcagtcaa acactttatc gacgtgggcg ctggcgtgat cgacgaagac
361 taccgaggca acgtcggagt ggtgctgttt aactttggaa acagtgactt tgaggttaag
421 aagggagaca ggatagctca gctaatatgc gaacgcatat cgtgcccagc agttcaagag
481 gttaactgct tggacaacac tgaccgcggc gactctggat ttggttctac tggatcgggt
541 gcttgtggtg gccgcgatac agcgtggtac atcagctaat caaaattgta aaatgtagct
601 tctttttatt cgagagtctc gcacagttgc gtagataaca ctaattacaa cacactttaa
661 tcatgcctgg agaaggacag tatcatatct acagtcacag tggaacttct aaagggtacg
721 caagtacacc cggaggtgct gtaaaacgtc caagttcagg aggtggaatt tggggacctt
781 tagagaaaag aatgtgtgtt ggaggtggta gtggtggtag taaaagctta agtggtggtg
841 ttaatggtgg tgttaacgga gggttaggca aaatataaca ttaaagtgtt tgctacttta
901 ttagctttat aacaaattat aactattttt atgattggtt attaaactca ttaccaacag
961 catgtccagt aacgataatg gtcgaaactt gcagtggaac taaacaacct agagaaacat
1021 ctgaaagttc taacaacaat ggatgggagc ttttggaacg gatttggaac aggtggtgga
1081 aaaagcactg tggttgcttt tggggcagga cacggtaacg gcagtggtgg agtgaacggt
1141 gttcaagttt taacacttta caccatcttc aaagtgaagt aggacgcgcc taatataacg
1201 tctctccttg tcgtcacaca tgactcctac ttctcgagaa tccttgctca ccaccctgct
1261 cgtggagcac ctggtccgcg cgcggcgccc tcgccggcgc tggtgcgcgc gctgctggcg
1321 gcgggcgcgc gcgcggcggg cccggacgcg gcggggcggc tgccgctggc ggcgctgctg
1381 cgcgcggcgc tgcgccgcgg cggcccgctg gacgcgcggc tgccgctgct gctggcgcgg
1441 cgcggggccg cggcctcggc gcgcgcccgc ggcggcgcgg ggcgctcggc ggcggggctg
1501 ctgcgcgcgg cgggcccgcg gtggcggcgg ctggccgcgg cgctggcggc cgcgggccgc
1561 gcggcggggt agcggcccgc ccgcccgggc gcccgccgca gcccttgccc cggaccaggc
1621 gccacggagc aaagtgaaaa aggaccgcct agcagtcgag accctcccgc cgcagccgcg
1681 gacaccccac acccgccttc cacccgccag acgccaacac cgcagccaac aagcatgcac
1741 ccctcgccgc gcaggctgct cggcgcgctc gcgctggtgg cgctgggctt cctcctcggc
1801 gggctcttcc gccccgcggc gccgccgctg ccggccgccc tcgtggaggc gggccccgtc
1861 cgcgcgaacg gctccgcctc ggtgacctgc ctgaccgtcg gcggcgacgg gcggcacatg
1921 gcggtggtcg cgcacggcgg cgggacgctc tcgccggtgt acccgctcgc cgccggcatg
1981 cacgcgacct tcgcctcgct gcgcaagggc gcgctgctgc tgaacgtcgc gaccgtgcac
2041 atctacgacg tgcgcgcgct cgggccggag ttcgagctga cctgcgtcgc ggtggcgggc
2101 ggctacaacg cggcctgggc ggccgcggcc cgcggccgag tggcgccgcc agctggcgcg
2161 gatgcaccgc tcggagctgt gaccctctcc ctcccggtct cccatccgtt tttgtaatcg
2221 gccttagtag attagaccag catcccgcgc ccttgtccgc cgcccttcgc tcgctcacga
2281 gcgaatcagt caattgatta tttttatcgc ccgcccgctc actccggtaa gggaacgcgg
2341 ttaacccact cacgagaaca agcgaccgcc actcacttga ggtaagggaa cggttacggt
2401 caactcactc acgagaacaa gttgactcac tcctcgaggt agagaacgag agaacaagtg
2461 accgtactca ctcacgagaa caagttgacg caccgctcac cgaggaaggg aacagagaac
2521 aagtaacagt aaccgttacc tcactcgcca ctcctcggaa taatagaacg agagaacgag
2581 agaacgagtt aaccgttgct cactcgctca ctcggtgtga gagaacaagt aacgttgctc
2641 actcgctcac tcggtgtgag agaacaagag aacgagtagc tgttgctaac tcaatcaccc
2701 ctcggagtaa gagaacaaga gcagtcaact acccactcag tcttggatga gaggcagagg
2761 acgagttgac gagttgaaca gttaatcctc actcactcag agcgagagag cgagagagtg
2821 gaggacgagt taacaagtca atcctcactc agagtgagag agtgagagag tggaggacga
2881 gttaatggtt aacagttatc accactcaga gtgagagcgg aggacgagtc aaccactcgc
2941 tcgcccactc cgagttagag agggaaccag tgcgagttaa cgcgcacacg agcgagagaa
3001 cgtaaactcg ctcgcgcgct cgctcggcta accgtcggcc tctcccaaaa ctcttcgtaa
3061 aactttcccg atgacagttc accctccaaa actttgtaaa actaaactgt tcggaggtcg
3121 gtctgctgcc tctctaactc tccgtaaaac gtttgtaaac tgtcggaggt cggtgacccg
3181 ctcaaccgtc cgcgaaaact tttcgcaggc agtgtctgcc tctctcggac tctccgcaaa
3241 cactttcgcg gaacctcgga gggtggtcga cctctctcca aactcttgca aaactttttc
3301 gcggaaccgt tggaggccag tcctccctcc aaactctttg taaaatcttt tcgaggccag
3361 tcctcctctc caaaacgttc cgcaaaatct ttgggaggtc ggcctctcct ctccagaacg
3421 ttccgtaaaa ctcttggagg ccgcccgcgg cacgcgaggc ggaggatccg aggtgtcgac
3481 ctccctcaaa aactttgtaa aaacttttta taaaactttc cgcggaacct cggagagtag
3541 gtcgacctct ctcaaaactc ttataaaact tttccgcgga accgttggaa ggtaggtcga
3601 cctctctcaa aactcttata aaacttttcc gcggaaccgt tggaaggtag gtcgacctct
3661 ctcaaaactc ttataaaact tttccgcgga accgttggag gcaggtcggc ctctcaaact
3721 ctttgcgaga actcttcgcg agaactcttc gataacttta ggaggtcagg tcgacctccc
3781 aaaacttttg cgagaactct ctgtaaaact ttaggaggtc ggtacctccc tcaaaacttt
3841 ttataaaact tttcgcggaa cctccggaga cgggccgccg ccgcgaccgc gggagcggag
3901 aggccgacct cccgagacgt tccgcgttac cgtcggggta ggcgtcctct cgagaacgcc
3961 aaaagacttc gtgcaaaaac ttttcggagg ggcgcggagg gcgggtcagc tcccgcgaac
4021 tcccgcagaa ccttttcgcg cgaccgcgaa ggccggccgc ctctcccaca ctctcaagag
4081 cttttcggag gagaggaagg gcaggtcgcc cccacctccg acgctttgta aaaacgttta
4141 cgcggaacct cggaggcagg tcgcctccct cgaaaactcc tcgcgaaacc tttaaaaact
4201 ttttgcgaaa acttttcgga ggatgtcgga gggcgggcgg ctcttccaaa cctccgcaga
4261 accttttcgc gcaaccgttg gaagacaggt cggcctctct cgaaaacttt taaaactttg
4321 taaacgcgtt ggcgggaccg tcgcgggaga gcggccgccc gcggcacgcg agaggaggaa
4381 ccgttggaag gcagtcggcc tctcccgaaa actttttata aaaacttttc cgcggaaccg
4441 ttggaggcag gtcggcctct ctcagagtct aaaaactttt tgcgggactc ggacggcgcg
4501 gtcacccgac cacctgactc ctgtctcacc cgtactactt ggacttctgt ttccctgact
4561 cccgactccc tgacctcccg actccctgac tcccgactcc ctgactcccg actccctgac
4621 tcccgactcc ctgactcccg actccctgac tcccgactcc ctgactcccg actccctgac
4681 tcccgactcc ctgactcccg actccctgac tcccgactcc ctgactcccg actccctgac
4741 tcccgactcc ctgactcccg actccctgac tcccgactcc ctgactcccg actccctgac
4801 tccctgactc cagagcgagg tctcgcggct gcggggtgcc gcctccgcgg agtcgcgttc
4861 ccgcggacgc ccgtcctcga aagcattcag cagttccagc ctctgccgta gctcctcccg
4921 caggaactcc tggtccgcgt tcgtcgcggc accgcggctc agccgccgcg ggagccggcc
4981 gccgcccgcg aagccgcgga tcc
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