GenBank-Updates@genbank.bio.net (08/30/90)
LOCUS TVMXCG 9472 bp ss-RNA VRL 30-AUG-1990
DEFINITION Tobacco vein mottling virus (TVMV) RNA genome.
ACCESSION X04083
KEYWORDS coat protein; helper component protein HC;
inclusion body protein CI; inclusion body protein NIa;
inclusion body protein NIb; polyprotein.
SOURCE Tobacco vein mottling virus.
ORGANISM Tobacco vein mottling virus
Viridae; ss-RNA nonenveloped viruses; Rod-shaped ss-RNA viruses;
Potyvirus.
REFERENCE 1 (bases 1 to 9472)
AUTHORS Domier,L.L., Franklin,K.M., Shahabuddin,M., Hellmann,G.M.,
Overmeyer,J.H., Hiremath,S.T., Siaw,M.F.E., Lomonossoff,G.P.,
Shaw,J.G. and Rhoads,R.E.
TITLE The nucleotide sequence of tobacco vein mottling virus RNA
JOURNAL Nucleic Acids Res. 14, 5417-5430 (1986)
STANDARD simple automatic
REFERENCE 2 (bases 1 to 9472)
AUTHORS Atreya,C.D., Raccah,B. and Pirone,T.P.
TITLE A point mutation in the coat protein abolishes aphid
transmissibility of a potyvirus
JOURNAL Virology 178, 161-165 (1990)
STANDARD simple staff_entry
COMMENT EMBL features not translated to GenBank features:
key from to description
INVREP 147 152 imp. inverted repeat A
INVREP 163 171 imp. inverted repeat A'
SITE 147 171 pot. stem-loop structure
RBS 201 205 pot. rRNA binding site
INVREP 9233 9239 inverted repeat B
INVREP 9244 9250 inverted repeat B'
TERM 9233 9250 stem-loop structure
SITE 9377 9382 put. polyA signal
POLYA 9471 9471 polyA site
FEATURES from to/span description
pept 206 9223 put. polyprotein
matp 947 2398 put. helper component protein HC
matp 3542 5446 put. inclusion protein CI
matp 5447 6877 put. nuclear inclusion protein NIa
matp 6878 8425 put. nuclear inclusion protein NIb
matp 8426 9220 put. coat protein
mut 8445 8445 g in wt; a in TVMV-NAT Gly->Glu [2]
BASE COUNT 3028 a 1803 c 2169 g 2472 t
ORIGIN
1 aaatgaaaca aatcaacaca acattataac gaaccagcaa tctcaagcaa tcaagctatt
61 ctcagcaatt tcagcaaaca caactacaga aagtaatttt tcactcaatt aattttcatt
121 agtttttaac tgcgacaata gcagagagat caatggcagc aacaatgatc tttggttcct
181 tcactcacga tcttttggca aggccatgtc aaccattcac tcagccgtca cagctgagaa
241 agacatattc tccagcataa aggagcgtct tgaaagaaag aggcatggga aaatatgccg
301 aatgaaaaac ggcagcatat acatcaaggc tgcttcgtcc acgaaagtgg agaaaataaa
361 cgcagcagcc aagaagctag ccgatgataa agcagctttc ttgaaggctc aaccaacaat
421 tgttgacaaa atcattgtca atgagaagat acaagtggtg gaagctgaag aagtgcacaa
481 gcgagaggat gtgcaaactg tattctttaa gaaaaccaaa aagagggcgc ccaagttgcg
541 cgcaacttgt agcagcagtg gtttagataa tttgtataat gcagtggcta atatagccaa
601 agcaagttct cttcgagtgg aggttatcca caaaaagagg gtttgtggag agttcaagca
661 aacaaggttt ggtagagcct tgttcattga cgttgcccac gcaaaaggcc acagacgtcg
721 catcgattgc agaatgcata gacgtgagca gcgaactatg cacatgttca tgcggaaaac
781 taccaagaca gaagttagat ctaagcatct tagaaaaggc gatagtggga tagttctcct
841 gacacagaag ataaaaggac atctcagcgg agtgcgggat gaattcttta ttgttagagg
901 aacgtgtgat gatagtttgt tggaggcaag agctagattc agtcaatcca tcacactgcg
961 tgcgactcac ttctcaactg gtgatatatt ttggaagggc tttaacgcat ccttccagga
1021 acaaaaagct ataggactcg atcacacttg tacatctgac ttgccagtgg aagcttgtgg
1081 gcatgttgca gctttaatgt gtcaaagctt atttccgtgc gggaaaatca catgtaagag
1141 atgcatagca aatcttagta acttggattt tgacacattt tctgaattac aaggtgatag
1201 agcaatgcga attctggatg taatgagagc acggtttcca agttttaccc acacaattcg
1261 cttcttacac gacttgttca ctcaacgacg agtcactaat cccaacactg ccgctttcag
1321 ggaaattctt cgtttgattg gagatagaaa tgaagcacca tttgcgcatg tcaatcgatt
1381 gaatgaaatt cttttacttg gttcaaaagc caatcctgac agccttgcaa aggcgtcaga
1441 ctctttgctt gagttggcga ggtatctgaa caatcgcaca gagaacattc gcaacggatc
1501 attgaagcat ttcagaaata aaatttcctc aaaagcgcat tcaaatctgg ctttgtcttg
1561 cgacaatcag ctggaccaga atggaaattt tttatgggga ctcgccggta ttgccgcaaa
1621 gagatttctc aataattact ttgaaacaat tgatcctgag caaggttatg ataagtatgt
1681 catccggaaa aacccaaatg gagaacgcaa attagcaatt ggcaatttta tcatttcaac
1741 aaaccttgaa aagttgcgcg atcaactaga aggggagtcg attgcacggg tcggaattac
1801 agaggaatgt gttagtcgga aggatggtaa ttataggtac ccatgctgct gcgtcactct
1861 cgaagatggt agtccaatgt actcagagct taaaatgcca acgaaaaatc atctagtaat
1921 tggcaattca ggggatccga aatacttgga tctaccaggt gaaattagca atcttatgta
1981 catagcaaag gaaggatatt gttatatcaa catatttctt gcaatgcttg ttaatgttga
2041 tgaagctaac gccaaggact ttactaagag agtgagggac gagtcagtac aaaagcttgg
2101 aaagtggcca agtttaatag atgtcgcaac tgaatgtgcc ttactatcta catattatcc
2161 tgcggcggct agtgcagaac tacccaggct tctagtagat catgctcaaa agacaattca
2221 cgttgtggat tcttatgggt cgttaaatac gggataccac atcctgaaag caaatacagt
2281 gagccaactt gaaaagtttg ctagcaacac gctagaatca ccaatggcac aatataaagt
2341 gggtggtctc gtgtattcag agaacaatga tgccagtgca gtcaaggcat taacacaggc
2401 aatatttcgg ccagatgtct taagcgaatt gatagaaaaa gagccttatc ttatggtctt
2461 tgccttagta tcacctggga tcttaatggc aatgtcaaat agtggtgcac tcgaatttgg
2521 aatttcaaaa tggatttcaa gcgatcatag tctggttcga atggcatcta ttttgaaaac
2581 tcttgccagt aaagttagtg tggctgatac actagctttg caaaaacaca taatgaggca
2641 gaatgcaaat tttctatgtg gagagttgat aaatggcttt cagaagaaga aatcgtatac
2701 acatgcaacg cgatttctac tgatgatttc agaggaaaat gaaatggatg atcctgtact
2761 gaatgcagga tatagagtat tagaagcatc gtctcatgag ataatggaaa aaacctatct
2821 cgcactgtta gagacatctt ggtcagactt aagcttgtat ggaaaattca agtcaatctg
2881 gtttacgcga aagcactttg gaagatacaa agcagaattg ttcccaaaag agcagacaga
2941 cttgcaagga cgctacagca actcgttgcg gtttcattac cagagtacgc tcaagcgctt
3001 gagaaacaag gggagtctgt gtcgagaaag atttttggaa agcatttcaa gtgcaagacg
3061 caggacaaca tgtgcagttt ttagtctttt gcacaaagca tttccggatg ttttgaaatt
3121 cattaacaca ttagtcatag ttagtttgtc tatgcaaata tattatatgc ttgtagcaat
3181 aatacacgag catagggctg caaagatcaa gagcgcgcag ctcgaagaaa gagtgttaga
3241 ggataagacc atgctattat atgatgattt taaagccaag ttgccagagg ggtcttttga
3301 ggagtttttg gaatacactc gacagcgtga taaagaagtg tatgagtacc tgatgatgga
3361 aacaactgag attgtggaat tccaagctaa aaacacgggc caagctagct tggaaaggat
3421 tatcgcattt gtgtcattaa cactaatgtt atttgacaat gagcgtagtg attgcgtgta
3481 caaaattctg acaaaattta aaggcatact tggtagtgtg gaaaacaatg tcagatttca
3541 gagtctagat acaatagtcc caactcaaga ggagaagaac atggtaatag actttgagct
3601 tgatagcgac acagcacaca cgccgcaaat gcaagagcaa acattcagcg actggtggag
3661 caaccaaata gcaaataatc gcgtagttcc tcactacaga acagaaggct atttcatgca
3721 gttcacccgt aatacggcat cagctgtttc acatcaaata gcccacaatg aacataaaga
3781 tattattttg atgggagcag tcggttcagg aaagtcaacg ggtctgccga caaatttatg
3841 caaatttggc ggagtgctat tacttgagcc cacgcgtcca ctcgcagaga atgtgacaaa
3901 gcaaatgagg ggaagccctt tcttcgcatc cccaactctt agaatgcgca atctcagcac
3961 attcggctct agcccgatta ctgttatgac aactggcttt gctttacatt tctttgcaaa
4021 caatgtgaag gaatttgatc ggtaccaatt tataatattc gatgagttcc atgtgctaga
4081 tagtaatgca atagctttca ggaacctttg tcatgagtat agctacaatg ggaagatcat
4141 aaaagtctcc gcaactcctc caggaagaga gtgtgattta accactcaat atccagttga
4201 gttactaatt gaggagcagc ttagccttcg ggacttcgtt gatgcacaag gcacagatgc
4261 ccatgcagat gtggttaaaa agggcgacaa cattcttgtg tacgttgcaa gttacaatga
4321 agttgatcag ttgagcaaaa tgttgaatga gcgaggtttt ctggtgacga aagttgatgg
4381 cagaactatg aagctaggag gggttgagat cataacaaaa ggaagctcaa tcaagaaaca
4441 cttcatcgtg gcaaccaata taatcgagaa tggggtaaca cttgatgtcg atgttgtggt
4501 agactttgga ctcaaagtcg ttccaaatct tgattccgat aatcgcttag ttagttattg
4561 caaaattccc ataagcttag gtgagagaat tcaaagattt ggccgagttg gtcgcaataa
4621 acccggagtg gcgcttagaa ttggggagac aataaaaggg ttggtggaaa ttccatctat
4681 gattgcaaca gaggcggctt ttctgtgttt tgtttacggc ttaccagtca caactcagaa
4741 tgtctcaact agcattttat cacaagtgag tgttcgccaa gcgcgagtta tgtgtcaatt
4801 tgaactccca atcttttaca cagctcattt ggtacggtat gatggggcca tgcatccagc
4861 cattcacaat gcactaaagc gatttaagct gcgagatagc gaaatcaacc tgaacacatt
4921 ggcaatccca actagcagtt caaagacttg gtatactgga aagtgttaca agcaattagt
4981 gggacggctg gacatccctg atgagatcaa gatcccattc tacacaaagg aggtacctga
5041 aaaggtgcct gagcagatct gggacgttat ggtgaaattt tcaagtgacg ccggctttgg
5101 gagaatgaca agtgccgctg catgtaaggt tgcatacaca ctgcaaactg acattcattc
5161 tatacagaga actgtgcaga ttattgatcg cctacttgag aatgaaatga agaagagaaa
5221 ccatttcaac ttggttgtaa atcaatcgtg ttcatctcac ttcatgtcct tatcatcaat
5281 tatggcatca ctcagagccc attatgccaa gaatcacacc gggcaaaata ttgaaattct
5341 tcagaaggca aaggcccagc tgcttgaatt ctccaacctt gcaatagacc catcaacaac
5401 agaagccttg cgagacttcg gatatcttga ggcagtaaga ttccagagtg aatcggagat
5461 ggctcgtggt cttaagttaa gtggacattg gaagtggtca ctcattagta gagatctcat
5521 tgttgtaagt ggcgtcggaa ttggtcttgg ttgcatgttg tggcaattct tcaaagagaa
5581 gatgcatgaa ccagttaaat ttcaaggcaa gagtagacgc cgacttcaat tcagaaaagc
5641 aagggacgat aagatgggtt atatcatgca tggtgaaggg gacacaattg aacatttctt
5701 tggcgcggcc tatacaaaga aaggaaagtc caaagggaaa actcatggcg ctggaacgaa
5761 ggcgcacaaa tttgtgaata tgtatggagt cagtcctgat gaatattcat atgtacgtta
5821 tctagatcca gtcacgggtg cgactctaga tgaatctcca atgacagact taaacattgt
5881 gcaagaacac tttggagaaa tcaggaggga agctatactt gctgatgcaa tgtcaccaca
5941 acaaaggaac aagggaatcc aggcatactt tgttagaaat tcaacaatgc caattctcaa
6001 agttgatctg acaccacaca ttcctcttaa agtatgtgag tctaataata ttgctggctt
6061 tccagagaga gaaggggaat tgcggagaac aggcccaaca gaaacactcc cctttgatgc
6121 actgccccca gaaaaacaag aagttgcatt cgagtcaaag gcgctactta agggagtgcg
6181 agattttaat ccaatctctg cttgcgtatg gctccttgag aactcctcgg atgggcatag
6241 tgagagactg tttggcattg gttttggccc atatatcatt gccaaccaac atctttttag
6301 aaggaacaat ggagagttga ctatcaaaac catgcatggt gagttcaaag tcaagaactc
6361 aacacaattg cagatgaaac cagttgaggg cagagacata atagttatca aaatggctaa
6421 ggacttccca ccattccctc aaaaactaaa attcagacag cctaccatca aagatagagt
6481 gtgcatggta tccacaaatt ttcagcagaa aagtgtctct agtctagtgt ctgagtcatc
6541 acacattgtg cataaagagg acacttcatt ctggcaacac tggataacaa caaaggatgg
6601 acaatgtgga agtccgctgg tttcaatcat tgatggaaat attttgggga tccacagcct
6661 gacgcatacg accaatggta gcaattactt cgtggaattt cctgagaagt tcgtagctac
6721 atatcttgat gccgctgatg gttggtgcaa gaattggaag ttcaatgctg ataagatcag
6781 ttggggttcc tttacattag ttgaggatgc gcccgaagat gacttcatgg ccaagaaaac
6841 tgttgccgcc atcatggacg atttggtccg cactcaaggg gagaagcgaa aatggatgtt
6901 ggaagcagcg catacaaata ttcaaccagt tgcgcatttg caaagtcagt tggtcacaaa
6961 gcacatcgtg aaaggccgct gtaaaatgtt tgcactttat cttcaggaaa atgcagatgc
7021 gcgtgatttc tttaagtcat tcatgggggc atatggtccg agccacttga acaaggaagc
7081 atacatcaag gacatcatga agtattccaa gcagattgtg gtaggctctg ttgattgtga
7141 cacattcgaa tcgtcattga aagttcttag caggaagatg aaagagtggg gatttgagaa
7201 tcttgaatat gtcacagatg agcaaactat caaaaatgca ttaaacatgg atgctgcagt
7261 tggtgcactt tacagcggaa agaaaaagca atattttgag gacttatctg atgacgctgt
7321 agcaaatctg gttcaaaaga gttgtctccg cttattcaaa aataaactag gcgtctggaa
7381 tggatcactt aaagcggaac ttagaccgtt cgagaagctc atcgagaata aaacacggac
7441 attcacagca gcaccaattg agacattgct cggaggaaaa gtctgtgttg atgattttaa
7501 caatcatttc tacagcaagc acatacaatg cccttggagc gttggaatga caaagttcta
7561 tggaggctgg aatgaacttc ttggaaagct tcctgatgga tgggtatatt gcgatgctga
7621 tggttcacaa tttgatagct cattatcccc atatttaata aatgcagtgc tccgtctacg
7681 attgtcaagc atggaagagt gggatgttgg acagaagatg ttgcaaaatc tctacacgga
7741 gattgtttac acaccaatat caacaccaga tggcacaatt gttaagaagt ttaagggcaa
7801 caacagtgga cagccatcta cggttgtgga caacacactc atggtggtgc ttgcaatgta
7861 ctatgcactg tccaaacttg gagtcgacat aaacagccag gaggatgtgt gtaaattctt
7921 tgccaatgga gatgatctta taattgccat atcaccagaa cttgaacatg tgcttgatgg
7981 ttttcagcaa cattttagtg acttaggctt gaattatgat ttctcgtctc gcacaagaga
8041 taaaaaggag ttgtggttca tgtctcacag agcactcagc aaagatggga tattaatacc
8101 aaagttagaa cctgagcgca tcgtgtccat tcttgaatgg gatcgtagtg cagagcctca
8161 ccatagatta gaagcaattt gtgcttccat gattgaggcg tggggttaca ctgacctact
8221 acagaacatc agaaggttct ataaatggac aatagagcaa gaaccttaca gaagccttgc
8281 agaacagggc cttgcaccat atttgtcaga agttgcacta agaagattat acacatcgca
8341 aatagccact gacaatgaac tcacagatta ctacaaggag atactcgcaa acaatgaatt
8401 cttgcgtgaa actgtgagat ttcaaagtga tacagtagat gctgggaagg acaaggcaag
8461 ggatcagaaa ctagctgata agccaacact ggcaattgat cgcacaaagg acaaggatgt
8521 taataccggt acaagcggca catttagcat tccaaggctc aagaaagccg caatgaatat
8581 gaaattgcca aaggttggag gaagttcagt tgtcaacttg gatcatctcc taacatataa
8641 gccagcacag gaatttgttg tgaacacgag agcaacacac tctcagttta aggcatggca
8701 cacaaatgtt atggctgaac ttgaattaaa tgaagagcaa atgaaaatag tgctcaatgg
8761 cttcatgatt tggtgtatag agaatggaac gtcaccaaac atcagtggtg tgtggaccat
8821 gatggatggt gatgaacaag tggagtatcc aatcgaacca atggtgaagc atgcgaatcc
8881 ctcattacgt cagataatga aacactttag taatcttgct gaggcttaca taaggatgag
8941 gaattcagaa caggtctaca tacccaggta tggcctgcag cgcggattag tagacagaaa
9001 cctggcaccg tttgcctttg acttctttga ggttaatggg gcaacaccag tccgggcaag
9061 agaagcgcat gcacaaatga aggcggccgc actccgcaat tcgcagcagc gcatgttttg
9121 tctggatggc agcgtgtcag ggcaagaaga gaacacagaa cgccatactg ttgacgatgt
9181 taatgctcaa atgcaccacc ttctgggtgt taagggggtg taagtatgga ttatatatat
9241 aattatatat actagtaatg ttttctactt gttaaaactc ttttagttac atatagcgca
9301 tctactcgca tttgtctaaa cttctacttg cccattttta ttatttctga tggtaaacat
9361 ttaagtaagt ttgcgtaata aatatatgta cttcctacta ttctatgatt agattttcaa
9421 caaagcgagg agacctccgg tttgtgatct agtcatctta tactgtcgaa ca
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