GenBank-Updates@genbank.bio.net (09/17/90)
LOCUS S13CG 5386 bp ss-DNA circular PHG 17-SEP-1990
DEFINITION Bacteriophage S13 circular DNA, complete genome.
ACCESSION M14428 M25197
KEYWORDS capsid protein; complete genome; overlapping genes; spike protein.
SOURCE Bacteriophage S13 DNA.
ORGANISM Bacteriophage S13
Viridae; ss-DNA nonenveloped viruses; Microviridae.
REFERENCE 1 (bases 841 to 1035)
AUTHORS Grosveld,F.G. and Spencer,J.H.
TITLE The nucleotide sequence of two restriction fragments located in the
gene AB region of bacteriophage S13
JOURNAL Nucleic Acids Res. 4, 2235-2252 (1977)
STANDARD simple staff_entry
REFERENCE 2 (bases 1 to 5386)
AUTHORS Lau,P.C.K. and Spencer,J.H.
TITLE Nucleotide sequence and genome organization of bacteriophage S13
DNA
JOURNAL Gene 40, 273-284 (1985)
STANDARD full staff_review
COMMENT Draft entry and clean copy of sequence in [1] kindly provided by
J.H.Spencer (20-JUL-1987)
FEATURES from to/span description
pept 37 1605 A' gene
pept 64 1605 A gene
pept 580 1605 A* gene
pept 1158 1520 B gene
pept 1520 1690 K gene
pept 1602 1862 C gene
pept 1859 2317 D gene
pept 2037 2312 E gene
pept 2317 2433 J gene
pept 2470 3753 F gene (capsid protein)
pept 3864 4391 G gene
pept 4400 5386 H gene (spike protein)
BASE COUNT 1288 a 1137 c 1251 g 1710 t
ORIGIN 219 bp upstream of AluI site.
1 ccgtcaggat tgacaccttt ctaattgtgt gatttcatgc ctccaaactt tggaggcttt
61 tttatggttc gttcttatta cccttctgaa tgtcacgctg attattttga ctttgagcgc
121 atcgaggctc ttaaacctgc tattgaggct tgtggcattt ctactctttc tcaatcccct
181 atgcttggct tccataagca gatggataac cgcattaagc tcttggaaga gattctgtct
241 tttcgtatgc agggcgttga gttcgataat ggtgatatgt atgtttacgg ccataaggct
301 gcttctgacg ttcgtgatga gtttgtatct gttactgaga agttaatgga tgaattggca
361 caatgctaca atgtgctccc ccaacttgat attaataaca ctatagacca cccgcccgaa
421 ggggacgaaa aatggttttt agagaacgag aagacggtta cgcagttttg ccgcaagctg
481 gctgctgaac gccctcttaa ggatattcgt gatgagtata attaccccaa aaagaaaggt
541 attaaggatg agtgttcaag attgctggag gcctccacta tgaaatcgcg tagaggcttt
601 actattcagc gtttgatgaa tgcaatgcgc caggctcatg ctgatggttg gtttatcgtt
661 tttgacactc tcacgttggc tgacgatcga ttagaggcgt tttatgataa ccccaatgct
721 ttgcgtgact attttcgtga tattggtcgt atggttcttg ctgccgagcg tcgcaaggct
781 aatgactcac acgccgactg ctatcagtat ttttgtgtgc ctgagtatgg tacagctaat
841 ggccgtcttc atttccatgc ggtgcatttt atgcggacac ttccttcagg tagcgttgac
901 cctaactttg gtcgtcgggt acgcaatcgc cgccagttaa atagcttgca aaatacgtgg
961 ccttatggtt acagtatgcc catcgcagtt cgctacacgc aggacgcttt ttcacgttct
1021 ggttggttgt ggcctgttga tgctaaaggt gagccgctta aagctaccag ttatatggct
1081 gttggtttct atgtggctaa atatgttaac aaaaagtcag atatggacct tgctgctaaa
1141 ggtctaggag ctaaagaatg gaacaactca ctaaaaacca agctgtcgct acttcccaag
1201 aagcttttca gaatcagaat gagccgcaac ttcgggatga aaatgttcac aatgacaaat
1261 ctgtccatgg agtgcttaat ccaacttacc aagctgggtt acgacgcgac gccgttcaac
1321 cagatattga agcagaacgc aaaaagagag atgagattga ggctgggaaa agttactgta
1381 gccgacgttt tggcggcgca acctgtgacg acaaatctgc tcaaatttat gcgcgcttcg
1441 ataaaaatga ttggcgtatc caacctgcag agttttatcg cttccatgac gcagaagtta
1501 acactttcgg atatttctga tgagtcgaaa aattatcttg ataaagcagg aattactact
1561 gcttgtttac gaattaaatc gaagtggact gctggcggaa aatgagaaaa ttcgacctat
1621 ccttgcgcag ctcgagaagc tcttactttg cgacctttcg ccatcaacta acgattctgt
1681 caaaaactga cgcgttggat gaggagaagt ggcttaatat gcttggcacg ttcgtcaagg
1741 actggtttag atatgagtca cattttgttc acggtagaga ttctcttgtt gacattttaa
1801 aagagcgtgg attactatct gagtccgatg ctgttcaacc actaataggt aaaaaatcat
1861 gagtcaagtt actgaacaat ccgtacgttt ccagaccgcg ctggcctcta ttaagctgat
1921 tcaggcttct gccgttttgg atttaaccga agatgatttc gattttctga cgagtaacaa
1981 agtttggatt gctactgacc gctctcgtgc tcgtcgctgc gttgaggctt gcgtttatgg
2041 tacgctggac tttgtgggat accctcgctt tcctgctcct gttgagttta ttgctgccgt
2101 cattgcttat tatgttcatc ccgtcaacat tcaaacggcc tgtctcatca tggaaggcgc
2161 tgaatttacg gaaaacatta ttaatggcgt cgagcgtccg gttaaagccg ctgaattgtt
2221 cgcgtttacc ttgcgtgtac gcgcaggaaa cactgacgtt cttactgacg cagaagaaaa
2281 cgtgcgtcaa aaattacgtg cagaaggagt gatgtaatgt ctaaaggtaa aaaacgttct
2341 ggcgctcgcc ctggtcgtcc gcagccgttg cgaggcacta aaggcaagcg taaaggcgct
2401 cgtctttggt atgtaggcgg tcaacaattt taattgcagg ggcttcggcc ccttacttga
2461 ggataaatta tgtctaatgt tcaaactggc gctgagcgta tgccgcatga cctttcccat
2521 cttggcttcc ttgctggtca gattggtcgt cttattacta tttcaactac tccggttatc
2581 gctggtgact ccttcgagat ggacgccgtt ggcgctctcc gtctttctcc attgcgtcgt
2641 ggccttgcta ttgactctac tgtagatatt tttacttttt atgtccctca tcgtcatgtt
2701 tatggtgagc ggtggattaa gtttatgaag gatggcgtta atgccactcc tcttccgacc
2761 gttaacacta cttcttatat tgaccatgcc gcttttcttg gcacgattaa ccctgatacc
2821 aataaaattc ctaagcattt gtttcagggt tatttgaata tctataacaa ctattttaaa
2881 gcgccgtgga tgcctgaccg caccgaggct aaccctaacg agcttaatga agatgatgcc
2941 cgttatggtt tccgttgctg ccatcttaaa aacatttgga ctgctccgct tcctcctgag
3001 actgagcttt ctcgccgaat gacgacttct accacgtcta ttgacattat gggtctgcaa
3061 gctgcttatg ctaatttgca tactgaccaa gaacgtgatt acttcatgca gcgttaccgt
3121 gatgttattt cttcatttgg aggtaaaacc tcttatgacg ctgacaaccg tcctttactt
3181 gtcatgcgct ctaatttctg ggcatctggc tatgatgttg atggaactga ccaaacgtcg
3241 ttaggtcagt tttctggtcg tgttcaacag acctataaac attctgtgcc gcgttttttt
3301 gttcctgagc atggcactat gtttactctt gcgcttgttc gttttccgcc tactgcgact
3361 aaagagattc agtatcttaa tgctaaaggt gctttgactt ataccgatat tgctggcgac
3421 cctgctttgt atggcaactt gccgccgcgt gaaatttcta tgaaggatgt tttccgttct
3481 ggtgattcat ctaagaagtt taagattgct gagggtcaat ggtatcgtta tgcaccttct
3541 tatgtttctc ctgtatatca ccttcttgaa ggcttcccat ttattcagga accgccttcc
3601 ggtgatttgc aagaacgtgt acttattcgc catcatgact atgaccactg ttttcagtcc
3661 gttcagttgt tgcagtggaa tagtcaggtt aaatttaatg tgaccgttta tcgcaatctg
3721 ccgaccactc gtgattcaat catgacttcg tgataaaaga ttgagtgtga ggttataacg
3781 ccgaagcggt aaaaatttta atttttgccg ctgaggggtt gaccaagcga agcgcggtag
3841 gttttctgct taggagttta atcatgtttc agacttttat ttctcgccat aattcaaact
3901 ttttttctga taagctggtt gctagttctg ttactccagc ttctttagca cctgttttac
3961 agacacctaa agctacatcg tcaacgttat attttgatag tttgacggtt aatgctggta
4021 atggtggttt tcttcattgc attcagatgg atacatctgt caacgccgct aatcaggttg
4081 tttctgttgg tgctgatatt gcttttgatg ccgaccctaa attttttgcc tgtttggttc
4141 gctttgagtc ttcttcggtt ccgactaccc tcccgactgc ctatgatgtt tatcctttga
4201 atggtcgcca tgatggtggt tattataccg tcaaggactg tgtgactatt gacgtccttc
4261 cccgtacgcc gggcaataat gtttatgttg gtttcatggt ttggtctaac tttaccgcta
4321 ctaaatgccg cggattggtt tcgctgaatc aggttattaa agtgattatt tgtctccagc
4381 cacttaagtg aggtgattta tgtttggtgc tattgctggc ggtattgctt ctgctcttgc
4441 tggtggcgtc atgtctaaat tgtttggagg cggtcaaaaa gccgcctccg gtggtattca
4501 aggtgatgtt cttgctaccg ataacaatac tgtaggcatg ggtgacgctg gtattaaatc
4561 tgctattcaa ggttctaatg ttcccaactc tgatgaggcc gcacccagtt ttctttctgg
4621 tgctatggct aaagctggta aaggacttct tgaaggtacg ttgcaagctg gcacttctgc
4681 cgtttctgat aagttgcttg atttggttgg gcttggtggc aagtctgccg ctgataaagg
4741 aaaggatact cgtgattatc ttgctgctgc atttcctgag cttaatgctt gggagcgtgc
4801 tggtgctggt gcttcctctt ctgctatagt tgacgccgga tttgagaatc aaaaagagct
4861 tactaaaatg caattggaca atcagaaaga gattgccgag atgcaaaatg agactcaaaa
4921 agagattgct ggcattcagt cggcgacttc acgccagaat acgaaagacc aggtatatgc
4981 acaaaatgag atgcttgctt atcaacagaa ggagtctact gctcgcgttg cgtctattat
5041 ggaaaatacc aatctttcca agcaacagca ggtttccgag attatgcgcc agatgcttac
5101 gcaagctcaa acggctggtc agtattttac caatgaccaa atcaaagaaa tgacccgtaa
5161 ggttagtgct gaggttgact tagttcatca gcaaacgcag aatcagcggt atggttcttc
5221 tcatattggc gctactgcaa aggatatttc taatgtcgtc actgatgctg cttctggtgt
5281 ggttgatatt tttcatggta ttgataaagc tgttgccgat acttggaaca atttctggaa
5341 agatggtaaa gctgatggca ttggctctaa tttgtctagg aagtaa
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