GenBank-Updates@genbank.bio.net (09/20/90)
LOCUS CHKCOLAVI 10057 bp ss-mRNA VRT 20-SEP-1990
DEFINITION Chicken alpha-3 collagen type VI mRNA, 3' end.
ACCESSION M24282
KEYWORDS collagen.
SOURCE Chicken (chick) aorta, cDNA to mRNA.
ORGANISM Gallus gallus
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves;
Neornithes; Neognathae; Galliformes; Phasianidae.
REFERENCE 1 (bases 936 to 8879)
AUTHORS Bonaldo,P., Russo,V., Bucciotti,F., Doliana,R. and Colombatti,A.
TITLE structural and functional features of the alpha-3 chain indicate a
bridging role for chicken collagen VI in connective tissues
JOURNAL Biochemistry 29, 1245-1254 (1990)
STANDARD full staff_entry
REFERENCE 2 (bases 8880 to 10057)
AUTHORS Bonaldo,P. and Colombatti,A.
TITLE The carboxyl terminus of the chicken alpha-3 chain of collagen VI
is a unique mosaic structure with glycoprotein Ib-like, fibronectin
type III, and Kunitz modules
JOURNAL J. Biol. Chem. 264, 20235-20239 (1989)
STANDARD full staff_entry
REFERENCE 3 (bases 1 to 10057)
AUTHORS Bonaldo,P.
JOURNAL Unpublished (1990)
STANDARD full staff_entry
REFERENCE 4 (bases 1 to 935)
AUTHORS Doliana,R., Bonaldo,P. and Colombatti,A.
TITLE Multiple forms of chick alpha-3(VI) collagen generated by
alternative splicings in type A repeated domains
JOURNAL J. Cell Biol. (1990) In press
STANDARD full staff_entry
COMMENT Draft entry and computer-readable sequence for [1],[2] kindly
submitted by P.Bonaldo, 13-SEP-1989.
Author address:
Centro Di Referimento Oncologico
Division of Experimental Oncology 2
Via Pedemontana Occidentale
I-33081 Aviano (PN), Italy
FEATURES from to/span description
pept 267 9680 alpha-3 collagen type VI (AA at 1)
sigp 267 341 signal peptide (AA -25 to -1)
matp 342 9677 alpha-3 collagen type VI (AA 1-3112)
signal 10037 10042 polyA signal
signal 10042 10047 polyA signal
BASE COUNT 2664 a 2449 c 2765 g 2179 t
ORIGIN
1 ccggcggtac cgcgccagcc gcctcccccg gccccgctca gagccgcggc ggccgcctgc
61 cggggtacca gcgcaccccg agcggccctc cgaggaggga gaagggaagc ggggacgctg
121 agcggcaccg gcgcggccgc agaaaggtgc ttcggaaggg gagaaccccg ggataagcga
181 tatattttgg gggttcgctc aggggtctca catcaggttc tttgaaacaa ggagaacaaa
241 aagggaaact gaaacaaaag aacacaatga ggaagcatcg gcatttgccc cttgcggcaa
301 tacttggcct cctgctctca ggcttttgct cagttggtgc ccagcagcaa gcagctgtca
361 gaaacgttgc cgtggctgat ataatatttc tagtggattc ctcttggagc attgggaagg
421 agcacttcca actcgttcga gagttcctgt atgatgttgt aaaggcttta gatgtgggag
481 gaaatgattt ccgttttgca ctggtccagt tcagcggaaa cccacacaca gagttccagt
541 taaatacgta cccctctaac caagatgtgc tctcccatat cgcgaatatg ccttacatgg
601 ggggaggcag caagactgga aaaggattag agtacctaat cgagaaccat ctcactaaag
661 ctgctggaag cagagcgagt gaaggcgtcc cccaggttat tatagtgtta acggacggac
721 aatcccagga tgatgtggct ctgccatcat ctgtccttaa atcggcccat gtaaacatga
781 ttgcggtcgg cgtgcaggat gcggtggaag gggagttaaa ggagatagcg agccgaccct
841 tcgataccca ccttttcaac ctagagaatt ttaccgctct ccatggcata gttggagact
901 tagtggcaag tgtccgtacc tccatgactc cagaacaggc tggagccaaa ggactggtta
961 aagacatcac agctcaagag tctgctgacc ttattttcct tattgacgga tcagacaaca
1021 tcggaagtgt caattttcaa gccatacgcg atttccttgt aaatttgatt gaaagcctca
1081 gagttggagc tcagcagata cacattgggg tggtgcagta tagtgatcaa cccagaactg
1141 agttcgcttt gaacagctac tccacaaaag cggatgttct ggatgccgtg aaggcactca
1201 gtttccgcgg tggcaaggaa gctaacactg gtgcagcact ggagtatgtg gtggagaacc
1261 tcttcaccca ggcaggaggc agcaggatag aggaagcggt gcctcagatc ttagtgctga
1321 taagtggtgg agagtctagc gatgatatcc gagagggctt gttagcggtg aagcaagcta
1381 gtatattttc atttagcatt ggggtcctga atgctgacag tgcagagctg cagcagattg
1441 ctactgatgg aagcttcgca tttaccgccc tggatatccg taaccttgct gctcttcgag
1501 aattattact gcccaacatt gttggagtgg cccaaagact cattttgtta gaggccccaa
1561 ccattgtgac tgaagttatt gaagtgaaca agaaggatat agtcttcctg atagatggct
1621 caacagctct ggggactggc ccctttaact caattcgtga tttcgttgcc aaaatcgtcc
1681 aaaggctgga ggttggacct gacctgatcc aagttgcggt ggctcagtat gcagacactg
1741 tgaggccaga gttttatttt aacacccatc agaacagaaa ggatgtgatg gctaatgtga
1801 agaaaatgaa gctcatgggt ggtacggccc tcaacactgg ctcggcactg gactttgtga
1861 ggaacaactt cttcaccagt gctgccgggt gtaggatgga ggaaggggtg ctccccatgc
1921 tggtactcat cactggtggt aagtccatgg atgccgttga gcaagctgca gcagagatga
1981 aaaggaacag gatagtgatc cttgctgttg ggtcgagaaa tgctgacgtg gcagaactcc
2041 aagaaattgc tcatgagaga gattttgtgt tccaaccaaa tgatttccgc cttcagttca
2101 tgcaagccat tcttcctgag gtgctgtcac ccatccggac actctccgga ggaatggtca
2161 tccacgaaac accatcagtt caagtaacca aaagggatat catctttctt ttggatggat
2221 cactcaacgt cggaaatgcc aacttcccct ttgtgcggga ctttgttgtg actttagtta
2281 actaccttga tgtcggaacc gacaaaatcc gagttggctt agtgcaattt agtgacactc
2341 ctaaaaccga gttctcccta tactcatacc aaaccaaatc agacataatt caacgtttgg
2401 ggcagctgag gcccaagggt gggtcagtgc tgaacactgg ctctgcactg aactttgtgc
2461 tttcgaatca cttcactgaa gctggtggga gcagaataaa tgaacaagtg ccgcaggtcc
2521 tagtcctggt gacggcaggg aggtcggccg tacccttcct gcaagtttcc aatgacttag
2581 ctcgggccgg agtgctgact tttgctgttg gagttaggaa tgcggataag gcagagcttg
2641 aacagattgc atttaatcca aaaatggtat attttatgga tgatttcagt gatctgacaa
2701 cattacctca ggagttaaaa aagcctataa caactatagt tagtggaggt gtggaggagg
2761 ttccactcgc cccaacagaa agcaagaaag acattttatt cctgattgat ggttcagcca
2821 acctcttggg tagctttcct gctgtccggg actttataca caaagtcatt tctgacctga
2881 acgtgggtcc cgacgccacg cgagtagctg tggctcagtt cagtgacaac atccaaattg
2941 aatttgactt tgctgaactc ccatctaagc aagacatgct tctgaaagtg aaaaggatga
3001 ggttaaaaac tgggaagcag ctgaatatcg gagttgcgct cgatgaagtc atgaggaggc
3061 tgttcgtgaa ggaagctgga agcaggattg aagaaggcat tcctcagttc ttggtcctcc
3121 tggctgctgg gaggtcaacc gatgaggtgg agcgaccatc gggagctctg aaggaagctg
3181 gagttgtgac ctttgctatc aaagccaaaa atgctgattt atcagagctg gaaaggatag
3241 cttacgcccc acagttcatt ctgaatgtcg aatcccttcc tcggatttcg gagctccagg
3301 caaacatagt gaacctactg aaaactatcc agtttcagcc aacagtagtt gagagaggtg
3361 agaagaagga tgtggtgttt ctaatcgatg gctcggatgg tgtcagaaga ggtttccctc
3421 tcctgaaaac ctttgtggaa agagttgttg aaagccttga tattggccgt gacaaggtcc
3481 gtgttgccat tgtgcagtac agcaacgcca tacaacctga gttcttgctg gatgcctacg
3541 aagacaaagc cgatttagtc agtgccatcc aggcgctgac aattatggga ggatctcctc
3601 tgaacaccgg agcagccctc gactatctca tcaagaacgt gttcaccgtg tcgagtggca
3661 gcaggatagc tgagggcgtc ccgcagttcc tgatcctgct cactgccgac cgatcccagg
3721 atgatgtgag gaggccctca gtggtcctca agacgagtgg cacagtgccc ttcggcatcg
3781 ggattggaaa tgccgacctc acagagcttc agacgatctc cttcctcccg gattttgcta
3841 tctctgtacc cgacttcagc cagctggatt cagtgcaaca ggccgtgtcc aacagagtca
3901 tccggctgac caagaaagaa atagagtctc ttgcccctga tctggttttt acatcaccca
3961 gcccagtggg tgtgaagagg gatgttgtgt tcctggtcga tggctcccgc tacgccgccc
4021 aggaattcta cctcatccgt gatctcattg agaggatagt gaacaacctg gatgtgggct
4081 ttgacaccac tcggatttcg gtggtccagt tcagcgagca tccccatgta gagtttcttc
4141 tcaatgccca ctccaccaag gatgaggtgc aaggtgcagt gaggcggctg cggccacggg
4201 gtggccagca ggtgaacgtg ggggaagccc ttgaatttgt ggcaaaaacc atctttaccc
4261 gtccgtctgg gagccgcata gaagagggcg tccctcagtt tttggttatc ctctcctccc
4321 gcaagtccga cgatgactta gaattcccat cggtacaagt caaacaagta ggagtggcac
4381 ctatggtcat agcaaagaac atggatcctg aggagatggt gcagatttcc cttagccctg
4441 actatgtgtt ccaagtctcc agcttccagg aactgcccag ccttgaacag aagctgctgg
4501 ctcctattga aaccctgact gcagaccaaa tcagacaact cctgggagat gtgacaacaa
4561 ttccagatgt ttctggtgag gaaaaggacg tagtcttcct tattgatagc tccgacagcg
4621 ttaggtctga tgggcttgct cacattcggg atttcatcag cagaattgtc cagcagcttg
4681 atgttgggcc aaacaaagtg cggattggag tggtgcaatt cagcaataat gtcttccctg
4741 agttctactt gagaacccac aagtctaaga atgccgtact gcaagccatc cgccgcttac
4801 ggcttagagg agggtacccc gtgaacgctg gcaaagccct ggactacgtg gtgaagaact
4861 acttcatcaa gtctgcaggg agcaggatag aagatggagt gccccagcat ctagttgtca
4921 tccttggaga tcagtcccag gatgatgtca acaggcctgc taatgtgatc tcttcaacga
4981 gtattcaacc tctgggtgta ggagccagga atgtagacag gaaccagctg caggtcatca
5041 ccaatgatcc tggccgcgtg cttgtagtgc aggacttcac aggactgccc actttagaaa
5101 gaaaggtgca gaacattctt gaagagctta cagtacctac aacagaaggc cctgtatatc
5161 caggaccaga aggcaagaag caggctgaca ttgtgttttt gctggatggc tccatcaacc
5221 tgggaagaga taacttccaa gaggttctcc agttcgtgta ttctatagtg gatgccatct
5281 atgaggatgg tgactccatc caggtaggac tggcacagta caactctgat gtcactgatg
5341 agtttttcct caaggattac tccagcaaac ctgagatttt agacgccatc aacaaggtga
5401 tctacaaagg tggccgagtg gcaaacactg gtgcagccat caagcacctt caggcaaaac
5461 actttgtgaa ggaggctggc agccgaattg accagagggt gcctcagatc gccttcatca
5521 tcacaggggg gaaatcttcc gatgatgggc aaggtgcctc catggaagtt gcacagaagg
5581 gtgtcaaggt gtttgcagtt ggtgtaagga acatcgacct ggaggaggtc agcaagttgg
5641 ccagcgagag tgccacgagt ttcagagtgt cgacggctca ggagttgtct gaactgaatg
5701 agcaggtctt ggttacattg gcagctgcta tgaaggagaa actgtgccca ggaacgacag
5761 atgtgacaag ggactgcgac ttagacgtga tacttggctt cgatgtgtca gatgtcggag
5821 ccggccaaaa catcttcaat tcccagagag ggctggagtc cagggtcgag gctgtgctga
5881 acaggataac acagatgcag aagatcagct gtaccggcag ccgggcgccc agtgtcagag
5941 tggccatcat ggcccagtcc cgagggggac ccgtggaggg actggacttt tctgagtacc
6001 agcctgagct cttcgagagg ttccaaggca tgcgcactcg tgggccctat ttcctcacag
6061 ccgagacact gaaatcctac cagaacaagt tcagatcagc accctctggc agcaccaagg
6121 tggtaatcca ttttacagat ggtacagatg actacttgga tcagatgaag actgcctcgg
6181 ctgatttgcg tagacaaggt gtccatgctc tcctcttcgt tggcttggat cgagtgaaaa
6241 actttgagga agtgatgcag ctggagttcg ggaggggttt cacctacaac aggccgctga
6301 gagttaatct cctggacttg gatttcgagt tggcagagca gctcgataac atcgcagaaa
6361 ggacgtgctg tggggtccct tgcaagtgct cagggcagag aggggacaga ggtcttcccg
6421 gccccatagg accaaagggt gctacaggtg agattggcta cggaggctat cctggagatg
6481 aaggaggacc gggtgagcgt ggacctccag gagtgaatgg gacgcagggc ttccagggat
6541 gccctgggca cagaggaacc aagggttctc ggggattccc aggagagaag ggcgaactgg
6601 gagaaatggg tctggatggc attgatggag aagagggaga caaaggcttg cctgggttct
6661 ccggagagaa ggggttctct ggcaggaggg gtagtaaagg agccaaaggt gaacgaggag
6721 agcgaggtga ccgtgggctc cgtggagacc ccggagagtc gggagcagat aatactcagc
6781 ggggaaccag aggccaaaag ggtgaaatcg gacaaatggg agagcctgga cctgcggggc
6841 agagaggcca agatggagga gttgggagga agggcatggc gggacgcagg gggccaatag
6901 gagtcaaggg taccaagggc gcgcttggcc agccagggcc agctggagaa caaggcatga
6961 gaggaccaca gggcccacct ggccagattg gcactccagg catcagggga gagcaaggca
7021 tccctgggcc cagggctggt ggtgggcaac caggagcacc tggagaaagg ggcaggattg
7081 gcccactggg acgaaagggc gagcctggaa atcctggacc caggggacca aatggacagc
7141 aaggcccacg aggagagatg ggtgatgatg gacgagatgg aattggcggc ccaggtccta
7201 aaggcagaaa gggagaacgt ggctttgttg gctacccagg acccaagggt ggacctggtg
7261 accgtggtgg tgctggaggc cccggcccta aaggaaacag aggccgtaga ggaaacgctg
7321 gaaatcctgg cacacctggt cagaaaggag agattggata ccccggacca tctggactta
7381 aaggtgataa aggaccatcc atcagtcaat gtgctctcgt gcagaacatc aaagataaat
7441 gcccatgctg ctatggtccc aaggagtgcc ctgtcttccc aaccgagctg gccttcgcta
7501 ttgacacctc ctcaggtgtc gggagggatg tcttcaacag gatgaaacaa accgtgctca
7561 gggtggtcag caacttaacc attgctgaga gcaactgccc tcgtggcgcc cgtgtggccc
7621 tggtcaccta caacaatgag gtcaccacag agatccgctt tgctgatgcc aggaagaaat
7681 cgagcctcct ccaacagatc caaaacttcc aggcaaccct gaccacaaag ccacgcagcc
7741 tggagactgc catgtccttt gtggccagga acaccttcaa gcgtgcccga agtgggttcc
7801 tcatgaggaa ggtggctgtc tttttcagca acggggagac gagagcctcc ccgcagctca
7861 acgatgccgt gctgaagctc tatgacgctg gggtcactcc tgtgttcctc accagcaggc
7921 aggatgcagt tctcgaaaga gctctggaga tcaacaacac agcagttgga catgcaatcg
7981 ttcttccaac cagcggcagc cagctgaatg acactatccg gaggctcttg acttgtcatg
8041 tttgtctgga tgtgtgtgaa cctgatccca tctgcggtta cggcagtcaa agacctgtat
8101 tcagagacag aagggcagcc ccgacagatg tggacactga catagccttc atcatggata
8161 gctcggcctc caccacacct ctgcagttca acgagatgaa gaagtacatt tcccacctcg
8221 taagcaacat ggaaatcagc tctgagccaa aaatatctca gcaccacgcg agagtggcag
8281 tcctccagca agctccttat gatcatgaaa ccaactcaag cttcccacca gtgaaaacag
8341 agttttcatt aaccgattac ggatccaaag agaagatcat caattacttg cacaaccaaa
8401 tgacgcagct ctatggcaca atggccatgg gaagcgcagt tgaacacaca gtggctcatg
8461 tttttgaaag tgcaccaaac cctcgggatc tcaaagtcat cgttctcatg ataactggga
8521 aaatggagaa acaagagctg gagtacttgc gggaggctgt aattgatgca aaatgcaaag
8581 gatacttgtt cgttatcttg ggcattggca agaacgtgga tgtcaagaat atctacagcc
8641 tagctagtga gccaaatgac gttttcttca aattggtctc taagcctgga gagcttcatg
8701 aagaacccct gctacgcttt gggagactgc tgccatcttt tatcagaagt gactttgctt
8761 tctacctatc tccagaaata aggaaacagt gcaagtggct ccaggctgat caaacaccca
8821 agagccctgg gcacactgga caaaaagcag tatatatagc ccccaatgga accgtaaccc
8881 aaaccataag caccaccacc acgctaagca ccaccttcaa gcctgctgca agcaccagtg
8941 cccatgccaa gaccaccact gccagcacca cggcccaaac cagagccacg gagaggccca
9001 cagagagcac tactgtccag gtgaatgcta ctgtacagag ccaaggaagc actgctgcca
9061 acaccaaagc caccagccgc accacaacga gcaccacagc tgcagcagca agcggcagga
9121 gaagacaagg tgcaaagatg aatgacatcc agatcacaga tgtcaccgag aacagcgcca
9181 ggctgcgctg ggccagccct gagccacaca atgcctacgt gtttgatctt gccatcacct
9241 tagcacacga ccactctctt gtgctgaagc aaaacgtaac cggcaccgaa cgtgtcattg
9301 ggggcctcag aagtggacag aaatacctcg tcttcattac cggctacctg aaatcccagc
9361 ccaaagtgac ctacacgggg acattcagca caaagacccc agcgcagccc aaagtggctc
9421 tggccaacat gatgctgaac gctgagccac tggaagggcc tgaaaatgtc atggacatct
9481 gcctgctgca gaaggaggag gggacctgca gggactttgt gctcaagtgg cactacgacc
9541 tgaagaccaa gagctgtgcc aggttctggt acggcggctg cggaggcaac gagaacagat
9601 tcaacacgca gaaagaatgc gaaaaagcct gcagccctgg taacatcagc cctggcgtgg
9661 tgacgacgat aggaacatag agccaacaac ctgccaacac atacctctga gacagccagg
9721 agcatccacc gttgccacct taccccaata gaagctaagg gtatagacta ccttgcactg
9781 tactatttca tgcttttaac ttccaaagca aaccctgaag aagggttttg ccgcatgacc
9841 tatcaatatg gtgctaaact gtttgtggac tgagtgctac gtgtgtccgg gatatattgt
9901 atagcttcaa cattacaaga tatttacctg attgcagatt gttattgtgt ctgaacacgt
9961 ctctaaaatt accctttctt tccaattccg gcagcctgcc tgtcttaagg cagcataaaa
10021 attagcaaaa tgaaaaaata aaataaaata aaaaaaa
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