GenBank-Updates@genbank.bio.net (09/22/90)
LOCUS WCPIMVOCG 5846 bp ss-RNA VRL 22-SEP-1990
DEFINITION White clover mosaic virus WCIMV strain O complete genome.
ACCESSION X16636
KEYWORDS complete genome.
SOURCE White clover mosaic virus (strain O) cDNA to viral RNA.
ORGANISM White clover mosaic virus
Viridae; ss-RNA nonenveloped viruses; Rod-shaped ss-RNA viruses;
Potexvirus.
REFERENCE 1 (bases 1 to 5846)
AUTHORS Beck,D.L., Forster,R.L.S., Bevan,M.W., Boxen,K.A. and Lowe,S.C.
TITLE Infectious transcripts and nucleotide sequence of cloned cDNA of
the potexvirus white clover mosaic virus
JOURNAL Virology 177, 152-158 (1990)
STANDARD full staff_entry
REFERENCE 2 (bases 1 to 5846)
AUTHORS Beck,D.L.
JOURNAL Unpublished (1990)
STANDARD full staff_entry
COMMENT Draft entry and computer-readable copy of sequence [1] kindly
provided by D.Beck, 20-MAR-1990.
FEATURES from to/span description
pept 108 3992 ORF 1
pept 3995 4705 ORF 2
pept 4683 5036 ORF 3
pept 5167 5793 ORF 4
BASE COUNT 1754 a 1589 c 971 g 1532 t
ORIGIN
1 gaaaacaaga cgagacgaac ccaaacagaa cgagccatcc gcagaaaaac taaaccatcc
61 caggttttct ttgaacataa ccaatccgta gtttgacaaa ggctgccatg gctaaagttc
121 gtgccgctct tgacagaatc actgatccat cggttaaagc tgtactcaat gaagaggcat
181 acagccacat ccgaccggtt cttcgtgaat ccctaaccaa caacccctac gccatcgcac
241 ccgatgctgc tgatacgcta gaaaagtatg gaattgctac taatccattc gcagtgaaag
301 tacattccca tggagcagtt aaaagtattg aaaacaccct acttgagaga gttgggttta
361 acttgccgaa agagccatgt accttcctct tcctcaaaag aagtaagctg cgttacctca
421 gacgtggacc tagcaacaat gacatcttta tcaatctagc gatcgaaccc cgcgacctcc
481 aaagatacga ggaagacact cttgttgaga gttggacacg tatcaccact aggtatgcat
541 atattagtga cactttccac ttcttcacta ggaagatgtt ggctgacctt ttctttcata
601 atccggcctt agatgtatta tatgccactt tagtacttcc acccgaagcc ctccacaaac
661 atcctagcat agaacctgac ttatacacta ttaactataa ctttaatggt ttccaataca
721 tcccaggcaa tcatggtggt ggttcctact cccatgaatt caaacaactg gagtggctca
781 aagttggaca tctcaaatct ccagaactat gcctcacttt ccagatgatc gaatccattg
841 gtgccaacca ccttttcatg attacccgcg gtattaaaat aacccctagg gtcaggactt
901 tcaccaaaga ctcttacgtg ctctttcccc aaatcttcca ccctcgaaac ctcaatccct
961 caaaaccatt cccgaaagtc aaagcaatgc aactattcac ttatgtgaag tctgtcaaga
1021 atccaactga acgagacatc tatgccaaaa ttcgacagct aatcaagact tctgagctat
1081 ctgattatca tccagatgaa attgtgcaca ttgtaaatta ctttgtgttc atctccaagt
1141 tagatagcat caactcttat tctgacatac tctcgctacc catctggtct aaagcattgc
1201 tacccatcaa aaccaaaatt acacaacttt gggaaaagct caccggcgca agagccttca
1261 atcaactctt agatgcactc caatggaaaa cattcactta tcctttagag gtagttgatt
1321 ctccacagcc ccttcagacc cgagattgct tcattgaaga cgagagatta gagattgaca
1381 cacttgagga tgaaatccca ccaaatccga acgacaacac ttcaatgagt ccacagagca
1441 ttgaggaggc tgttaaaaac aaccctgatt taccctgggc accatggtta ctcatcttgc
1501 aggctcataa tgctgactgc actgaaaagc agtatgaccc tgagaataac ctcattcttc
1561 ctatacaaga gatcaacacc ctccccaagc accaacaccc tgacatccca actgaccttc
1621 taacactcct aaccaaatta cacagagagc caactacagt ctcacttgac aaccatcgag
1681 ctcgtgccta tggttctgac gttaagaatc tgcgaatagg cgctctactc aaaaaacaaa
1741 gcaaagattg gttagctagt ttcgctctca aaacggaaaa tattgaacgt gaagttttga
1801 tgtctgtcat ccatggtgcc ggcggctctg ggaaatcaca tgccattcaa acttggatgc
1861 gctccctgaa ccgaagagac cgtcatgtca caatcatttt accaacgaca gacttgcgga
1921 atgactggac caacaaagtg cccaatctgg agcaagcaaa tttcaaaact tttgagaaag
1981 ctctttgtca accttgtggt aaaattatcg tatttgatga ctactccaag cttcctcaag
2041 gctacatcga agcattcctt gctatcaacc aaaatgtcat tttagccatt cttaccggag
2101 attctaagca gagctttcat catgaatcca atgaggatgc ctacactgcc accctagaac
2161 ccagcattat cacataccaa cccttctgcc gctactacct aaacataacc catagaaaca
2221 aaccagacct agctaacaaa ctgggtgttt actcctgttc tagtggcacc acctccttca
2281 caatgtcatc ccaagctctc aagggtatgc caattctctc ccccagtata atgaagaaaa
2341 ctgctcttgg agaaatgggc caaaaaagca tgacatacgc tggctgccaa ggtctcacaa
2401 ctaaagctgt ccaaattctc ttggatacca ataccccttt gtgcagttcc aacgtcatat
2461 acactgctct cagccgtgct gttgaccaca tacattttat taacactgga cccaactcaa
2521 cagacttctg ggagaaactt gattccacac cctacctcaa aactttcttg gactgtgttc
2581 gagaagaaaa aatgaatgag atcatcgctg ctgaagaacc acctactcct gtgcaggctc
2641 ctaccaccca cttcccaaaa gtgaacccca ccacagtgat tgaatcatat gtccacgatc
2701 ttcccgaaaa acatgatcgt gaaatctttt cagagactca tggtcactca aatgcaattc
2761 aaactgacaa tcctgtggtt caactctttc cccaccaaca agccaaagat gaaactcttt
2821 attgggctac catcgaagct agactacaat gcacttcatc tgaagaaaac cttaaagaat
2881 ttcatctcaa acatgatatt ggtgacattc tcttccttaa ttacaaacaa gccatgaacc
2941 ttcctcaaga ccccatacca tttaacccag acctatggac cctttgcaga caggaaattg
3001 agaacacata cctcaagaaa agtgctgctg cccttgttaa tgctgccacc cgccaatcac
3061 ctgattttga ctcacatgcg atagcactct ttctcaaatc acaatgggtc aagaaaactg
3121 aaaaaattgg ttgccttaaa atcaaagctg gccaaactat tgctgccttc atgcaacaaa
3181 ctgtcatgat ttatggcaca atggctcgat acatgagaaa atttagaaac caatattgcc
3241 ccaggaaaat ctttgtgaac tgtgaaacca caccagccga cttcaactct ttcatcctcg
3301 acgagtggaa ttttaataga acttgctttt caaatgactt cactgcattt gatcaaagtc
3361 aagatggctc catcctccaa ttcgaagtca ttaaagcaaa gtttcacaac atacccgagg
3421 atgttattga aggctatatc caaatcaaaa cacatgccaa gatcttcctg ggcaccctta
3481 gtatcatgag actctctggt gaaggtccca cttttgatgc taacactgaa gcaaacattg
3541 cttatacaca caccaagttt aacataccct gcgatgctgc acaggtgtac gctggtgatg
3601 atatgtccat tgactacgtg gcttcagtca agcccagttt caacatgatt gaacatctga
3661 tgaaactcaa aggtaaacca gtttttaaca cacaaactca gggagacttc gctgaatttt
3721 gcgggtggac aatctcacca aaaggcatta tcaagaaacc agaaaaaatg aacatgagca
3781 ttgaactcca aaagaacatc aacaagtttc atgaagtcaa aagaagttat gctctagacc
3841 atgccttcgc ataccaactt ggtgatgaat tacatgagct atacaatgag aatgaagcag
3901 aacaccacca acttgctaca aggtcactca ttctcgctgg tcaagccacc gccctagaca
3961 tacttgatta cgggttaaga gacctaaagt agcgatggat cacattcacc acctcctcag
4021 ctcccacggt tttacccgca ccagactcgc caaatccaaa cctatcgttg tccatgctat
4081 tgcaggctcc ggtaaatcta ctgtgatcag gaaaattctc tcagacctac ccaacgctag
4141 agcctacaca ttaggtaaac cagaccccta ttctctctcc aaccccacaa ttaaagcttt
4201 cgcccaattc aaaagaggta cactcgacat tttggatgag tacggccaac tcccgttcgc
4261 cgacttagat tcatctttcg agtttatctt cactgaccct taccaagcac caactgacaa
4321 tctctttgaa cctcactaca cactagaaat cacctacaga tttggcccta acacttgtaa
4381 ccttctcaat caagcattcc aatctaacat cacaagcctt gtcacccagg acaacatttc
4441 atttggttca ccctacttag ttgacccagt aggtaccatc ctcgcgtttc aacctgacac
4501 ctaccttatc ctttgcttac atcaagcccc tttcttcaaa gtttcagaag tgattggtta
4561 tcagtggcct actgtaacgt tgtacctagc ctgcaaaatt tctgagattc ctgaagaaga
4621 acgtcacctc ctcttcattg gcctgactag acacacagaa tccctcctta ttttaggtcc
4681 tgatgccttt gattcctccc cctaatcccc agaaaactta ccaaattgcc gtacttgctt
4741 taggattagt gctacttctt gcctttgttc taatttctga tcactctccc aaagtaggtg
4801 atcatctgca caatcttcct tttggaggtg aatacaaaga cggtactaaa actatcaagt
4861 atttccaaag acccaaccaa cattcccttt ccaaaactct tgccaaatct cacaacacca
4921 ccattttcct gatcatctta ggtttaattg gtaccttgca tggacttcac tactttagta
4981 ataataggcg tatatcttct agtcttcatt gtgtactttg ccaaaataaa cactagcatg
5041 tgtactatta gtatatcagg agcttctgtt gaaatctcag gttgcgacaa cccggctctc
5101 ttcgaaatcc tcccaaatct caaacccttt gaccacgggt taagtgtgcc atctatttga
5161 aatccaatgg caaccaccac agcaaccact cctccatcct tgacagacat ccgagcccta
5221 aaatacactt cctccaccgt ctcagtcgcc tcacctgctg aaattgaagc tatcactaaa
5281 acctgggcag aaacattcaa aattccaaat gacgtcttgc ctctcgcttg ttgggatctg
5341 gctcgtgctt tcgctgatgt tggcgcttct tctaagtctg aacttactgg tgactctgct
5401 gctcttgcgg gtgtttcacg gaaacaactg gctcaagcta tcaaaatcca ttgcaccatt
5461 cgccagttct gcatgtactt cgccaatgtt gtgtggaaca tcatgttaga taccaaaaca
5521 ccgccagcat cctggtctaa actcggctat aaagaagaga gcaaattcgc tggctttgac
5581 ttctttgatg gtgtcaatca tcctgctgca ctcatgcctg cagacggcct catccgtggt
5641 ccttccgaag ctgaactctt agcccatcaa accgcaaaac aagtagccct ccatcgcgac
5701 gcaaaacgcc gtggcaccaa cgttgtcaac tctgttgaaa tcactaacgg tcgctccgac
5761 cctattggtc cccttattac ctatccccag taattgcctt atcacttcac ttaatatgtg
5821 tggctttctg tttaataaaa tttcag
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