GenBank-Updates@genbank.bio.net (09/29/90)
LOCUS SMFPOLENV 3534 bp ss-RNA VRL 29-SEP-1990
DEFINITION Simian foamy virus type 1 polymerase (pol) gene, 3' end; and
envelope (env) gene, complete cds.
ACCESSION M33561
KEYWORDS envelope protein; polymerase.
SOURCE Simian foamy virus type 1, cDNA to viral RNA.
ORGANISM Simian foamy virus
Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
Spumavirinae.
REFERENCE 1 (bases 1 to 3534)
AUTHORS Mergia,A., Shaw,K.E.S., Lackner,J.E. and Luciw,P.A.
TITLE Relationship of the env genes and the endonuclease domain of the
pol genes of simian foamy virus type 1 and human foamy virus
JOURNAL J. Virol. 64, 406-410 (1990)
STANDARD simple staff_review
FEATURES from to/span description
pept < 1 582 polymerase (pol; AA at 1)
pept 524 3481 envelope protein (env)
BASE COUNT 1164 a 648 c 674 g 1048 t
ORIGIN
1 gaattcagta ctccttacca cccccaaagt agtggtaaag tggaaaggaa aaatagtgac
61 attaaacgac ttttaactaa actgctaatt gggagacctg ctaagtggta tgatctacta
121 cctgttgtac aattggcctt aaataattct tatagtccct cttctaaata tactcctcat
181 caactcttgt ttggtgtaga ttccaacaca ccgtttgcaa attctgatac acttgactta
241 tccagagaag aggaactgtc tcttttacag gaaattagat cttctctaca ccagccaacc
301 tcccctcctg cctcctctcg ttcctggtct ccttctgttg gccaactagt ccaggagagg
361 gtagctcgcc ctgcttcact tcgaccacgc tggcataagc ctacagctat tttggaggtc
421 gtgaatcctc ggacagtgat aattttggac catcttggca acagacgtac tgtaagtgtt
481 gacaacctta agttaacagc ttatcaggat aatggcacct ccaatgactc tggaacaatg
541 gctcttatgg aagaagatga gtcaagcaca tcaagcactt gaaaatgtaa ccaccttgac
601 tgaggaacag aagcaacaag ttataataga cattcagcat gaagatgttg ttcctactag
661 gatggacaaa ttgaaatatc tggcctattc atgctgcgct actagcacac gtgtattgtg
721 ctggatagtg ttagtttgcg tcttgctatt agttgtattt atatcctgct ttgtgacaat
781 gtccaggata caatggaata aggatattgc tgtttttggt ccagtcattg actggaatgt
841 tagccaacaa gctgtgattc aacaaataag agctaaaaga ttagcaagat caattagggt
901 ggaacatgct actgagacat atgtagaggt caatatgacc agtatacctc aaggggtgtt
961 atatgtgcct catccagaac caataattct caaggagagg gttcttggtt tatctcaggt
1021 cataatgata aactctgaaa atattgctaa tactgctaac cttactcaag aaactaaggt
1081 actgttagca gacatgatta atgaagagat gaatgattta gctaatcaaa tgatagattt
1141 tgaaatccca ttaggagatc ccagagatca aaaacaatac cagcatcaaa aatgttttca
1201 agaatttgca cattgttatt tagtaaaata taaaactact aaaggatggc ctagttctac
1261 tgttatagca gatcaatgcc ctttgcctgg taaccatcct acagtacaat atgcacatca
1321 aaatatatgg gattattatg tcccctttga acaaattcgg ccagaaggat ggaactcaaa
1381 aagttattat gaagatgcta gaataggagg gttttatata ccaaaatggt tacgaaataa
1441 ttcctatacc catgtcttat tttgttctga tcaaatttat ggaaaatggt ataatattga
1501 tctcacagcc caggagaggg aaaatttatt agtccaaaaa ttaattaatt tagctaaagg
1561 aaattcatca caattaaagg atagagctat gccagctgaa tgggataaac aaggaaaagc
1621 tgatctattt agacaaatta atactttaga tgtttgtaat agaccagaaa tggtattttt
1681 gttaaattcc tcatattatg aattttccct atgggaagga gattgtggtt ttaccagaca
1741 gaatgttaca caggctaatt ccttatgtaa agatttctat aataactcaa aatggcaaaa
1801 attacatcca tattcgtgta gattttggag atataaacaa gagaaagaag aaactaaatg
1861 tagtaatggt gaaaagaaaa aatgtcttta ttacccacaa tgggatactc ctgaagcttt
1921 atatgacttt gggttcctag catatttaaa ttcttttcct tctccaatct gtataaaaaa
1981 tcagactata agggaacctg agtatgaaat ctcttcttta tacctagaat gcatgaatgc
2041 ttcagacaga catggtatag atagtgcttt attagctttg aagacatttt taaactttac
2101 tggtcagtct gtaaacgaaa tgccattagc tagagccttt gtaggcctta ctgaccctaa
2161 atttccacca acatatccca acattacaag ggaatcttct ggttgtaata ataacaaaag
2221 aaaaaggaga agtgttaata attatgaaag acttagatct atgggatatg ctttaactgg
2281 agctgttcaa actttatctc aaatatctga tattaatgat gagaggctgc aacacggagt
2341 atatttactc cgggatcatg tggtaaccct gatggaagct gcccttcatg atgtttcgat
2401 tatggaagga atgttagcaa ttcaacatgt gcatactcat ctcaatcatc tcaagaccat
2461 acttttgatg agaaagattg attggacatt catcagaagt gactggattc aacagcaatt
2521 acagaagaca gatgatgaaa tgaaattgat acgaagaact gcacgaagtc tagtctacta
2581 tgtcacacaa acctccagtt ctcctacagc tacttcctgg gagattggaa tatattatga
2641 aatagtaatt cctaaacata tatatttaaa taattggcaa gtaatcaatg taggtcattt
2701 attggagtca gctggtcatc tgactcatgt aaaggttaag catccttatg aaataattaa
2761 taaggaatgt agtgacactc aatatttaca tcttgaggaa tgcattagag aggattatgt
2821 gatttgtgac atagtacaaa tagttcaacc atgtggaaat gcaacagaat tgagtgattg
2881 tccagtagca gcattaaagg tgaagactcc atatattcaa gtgtctcccc tgaagaatgg
2941 aagttattta gttttatcta gtactaagga ttgttctata cctgcatatg tacctagtgt
3001 ggtcacagtc aatgaaacag ttaagtgctt tggagtagag tttcacaaac cactttatgc
3061 tgaaacaaaa accagctatg aaccacaagt tccgcatttg aagcttcgtt taccccactt
3121 gactgggatt attgccagct tgcaatcact ggaaatagaa gttacttcta cacaagagaa
3181 tataaaagac cagatcgaaa gggccaaagc acagcttctc cggctggaca ttcacgaagg
3241 agactttcct gactggctga aacaagtcgc ctctgcaacc agggacgttt ggcctgctgc
3301 agcttccttt atacaaggag taggtaactt cttatctaat actgcccagg ggatattcgg
3361 ctcagcggta agcctcctat cctatgcaaa acctattttg attggaatag gagttatact
3421 gcttattgcc cttcttttta agataatatc atggcttcct gggaagctca agaagaattg
3481 agagaacttc tacatcatct accagaggac gatccaccag cagatctaac tcat
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