GenBank-Updates@genbank.bio.net (10/10/90)
LOCUS P29LATE2 12177 bp ds-DNA PHG 10-OCT-1990 DEFINITION Bacillus phage phi-29 head morphogenesis, major head protein, head fiber protein, tail protein, upper collar protein, lower collar protein, pre-neck appendage protein, morphogenesis(13), lysis, morphogenesis(15), encapsidation genes, complete cds. ACCESSION M14782 KEYWORDS encapsidation protein; head fiber protein; head morphogenesis protein; lower collar protein; lysis protein; major head protein; morphogenesis protein; pre-neck appendage protein; tail protein; upper collar protein. SOURCE Bacteriophage phi-29 DNA. ORGANISM Bacteriophage phi-29 Viridae; ds-DNA nonenveloped viruses; Podoviridae. REFERENCE 1 (bases 1 to 12177) AUTHORS Vlcek,C. and Paces,V. TITLE Nucleotide sequence of the late region of Bacillus phage phi-29 completes the 19285-bp sequence of phi-29 genome: Comparison with the homologous sequence of phage PZA JOURNAL Gene 46, 215-225 (1986) STANDARD simple staff_review FEATURES from to/span description pept 79 375 head morphogenesis protein pept 406 1752 major head protein pept 1752 2594 head fiber protein pept 2608 4407 tail protein pept 4412 5341 upper collar protein pept 5334 6215 lower collar protein pept 6228 8792 pre-neck appendage protein pept 8804 9901 morphogenesis protein (13) pept 9920 10315 lysis protein pept 10317 11093 morphogenesis protein (15) pept 11104 12102 encapsidation protein BASE COUNT 3936 a 2256 c 2738 g 3247 t ORIGIN 1 cccacaaatc cttatgtatc aagggttcac gtggtataat taagtagtac taatagatta 61 tagaaagagg tgaaacatat gccattaaaa ccagaagaac acgaagatat tttgaataag 121 cttttagacc ctgagttggc tcaatcagaa agaacggaag ctcttcaaca gctcagagtg 181 aactacggtt cttttgtgtc cgagtacaat gatttaacaa aatctcatga aaagttagcc 241 gctgaaaaag atgatctgat cgtgtcaaat agtaagcttt tcagacagat tggtttgaca 301 gacaaacagg aagaagatca caagaaagct gatattagtg aaacaatcac gatcgaggac 361 ttagaagcaa agtaattata atagaagaaa agaggtacaa cattcatgcg aattacattt 421 aacgacgtga aaacgtctct aggtattacc gaatcatacg acatcgtgaa tgccattcgt 481 aacagtcagg gcgataactt caaaagttat gtgccgctag caactgcgaa caacgtcgca 541 gaagtcgggg caggtatcct gatcaatcaa acggtacaaa atgatttcat cacgtccctt 601 gttgatcgta ttggacttgt ggttatccga caggtgtcgt taaacaaccc gttgaagaaa 661 ttcaagaaag gtcaaattcc tctcggtcgt actatcgaag agatttatac agacatcaca 721 aaagaaaaac agtacgatgc tgaggaagcc gaacagaagg tatttgaacg tgaaatgccg 781 aacgtcaaaa ctctcttcca cgagagaaac agacagggct tttatcatca aacaatccaa 841 gatgactcac tcaaaactgc atttgtatca tggggtaatt tcgaaagctt tgtttcttct 901 attattaatg ctatctacaa tagtgctgaa gtagacgaat acgaatatat gaaattgtta 961 gttgacaact actattcaaa agggttgttc actactgtaa aaatcgatga gccgacttct 1021 tctacagggg cattaactga atttgtgaag aaaatgcgtg cgactgctcg taaactcaca 1081 ttgccgcaag gttcccgtga ctggaactca atggctgttc gaacacgctc ttatatggaa 1141 gatttacacc taatcattga cgctgacctt gaagctgaac tagatgttga tgttttagct 1201 aaggcattca atatgaaccg tactgacttc ctcggaaatg tgacggtcat tgatggtttc 1261 gcatccactg gactagaagc tgttttagtt gacaaagact ggtttatggt gtatgacaac 1321 ctccataaaa tggagactgt tcgtaaccca cgtggcttgt actggaacta ttactaccat 1381 gtgtggcaga ccctaagcgt gtcccgtttt gccaatgccg ttgcgtttgt atctggtgat 1441 gttcctgctg ttactcaggt tattgtttct cctaacatcg ccgcagttaa gcaaggcgga 1501 caacaacaat tcactgccta tgttcgtgct acaaacgcta aagatcataa agtcgtttgg 1561 agcgttgaag gtggttcaac gggtacagct attacagggg atgggcttct ttctgtcagc 1621 ggaaacgaag ataatcagtt aacagtaaaa gcaactgttg acatcggaac agaagacaaa 1681 ccaaaactcg ttgtgggtga agctgttgta tctattcgtc cgaacaatgc ctctggaggt 1741 gctcaggcgt aatgatggtt tcatttactg cacgtgcaaa gtctaatgtt atggcatatc 1801 gtttactagc gtattcacag ggagacgaca tcatagaaat ttcacacgcc gcagaaaata 1861 ctatacctga ttacgttgcc gttaaagacg ttgacaaggg tgatctaaca caagtcaaca 1921 tgtacccttt agccgcttgg caagttatcg ccggaagtga tatcaaagtg ggcgataatc 1981 tcacaactgg taaggatggt actgctgttc ccaccgacga ccctagcacg gtttttgggt 2041 acgctgtcga agaggctcag gaaggacagc tagtcaccct cgttatcagc cgatcaaaag 2101 aaatttctat agaagtagat gatattaagg acgccggaga cactgggaaa cggttattga 2161 aaatcaatac cccgtccggt gctcgtaata tcattattga aaatgaagac gctaaagcat 2221 tgataaatgg cgaaaccacc aacacaaata agaagaacct tcaagaccta ctattttcag 2281 acggtaatgt taaggctttt ctacaagcta ccacgaccga tgagaataaa acggctcttc 2341 aacaattgtt ggttagcaac gccgatgtgc ttggtcttct gtcaggaaac ccaacatctg 2401 acaataaaat taaccttcgc acaatgatcg gggcgggcgt tccatactcg ctccccgccg 2461 ctacaacgac aacgattggc ggtgtgaaga aaggtgcggc agttacagca tctacagcaa 2521 ccgacgtggc gactgcggtt aaagacttga acagtttaat tactgtttta aagaacgcag 2581 gaatcatatc ataaggtggt ttgattaatg gcatatgtac cattatcagg aacgaacgtc 2641 aggattttag ctgacgttcc tttctctaat gattataaaa acacgagatg gttcacatct 2701 tcaagtaatc agtataactg gtttaacagg aaatcacgtg tgtatgaaat gagtaaagta 2761 acattcatgg ggtttagaga aaataaacca tatgtttcgg ttagtcttcc catagataag 2821 ctttacagtg cgtcatatat tatgtttcaa aatgcagact acggtaacaa gtggttttat 2881 gcatttgtaa ccgagttaga atttaaaaat agtgctgtta cctacgttca ctttgaaatt 2941 gatgttctcc aaacatggat gttcgatatg aaatttcaag aatcattcat tgtgagggag 3001 cacgttaaat tatggaatga cgacgggaca ccgactatca acacaattga tgagggtctc 3061 agctacggaa gtgaatacga catagtttct gtagaaaacc ataaaccata cgacgacatg 3121 atgtttctcg tgattatttc caaaagcatt atgcatggga cgccgggaga agaggaaagc 3181 aggctaaatg acataaacgc aagcctgaac ggcatgccgc aacctctctg ctactatatt 3241 cacccattct acaaagatgg taaagttcct aaaacgtata tcggagataa caacgctaac 3301 ttgtctccta ttgtcaatat gctcaccaat atcttttcac agaagagcgc tgttaacgat 3361 attgtcaata tgtatgtgac tgattatatt ggtttgaagc ttgactataa aaatggtgat 3421 aaagaattga agctcgataa agacatgttt gaacaggcgg gtatagctga tgataaacac 3481 ggtaacgttg acaccatctt tgtgaagaaa atacctgatt atgaagccct agaaatagac 3541 acaggtgata aatggggtgg cttcacaaaa gaccaagaaa gcaaactgat gatgtaccct 3601 tactgcgtta cggaaataac tgactttaaa ggcaaccata tgaatctgaa aaccgagtac 3661 atcaataaca gtaaactaaa gatacaggtt aggggttcac taggggtcag taacaaggtt 3721 gcctacagtg ttcaggatta taacgcagat agcgcattga gtggcggcaa tagattgact 3781 gcgtctctag attcatcctt aatcaacaac aacccaaatg acatagcaat actaaatgac 3841 tatctatctg cttatttaca gggcaacaaa aattcactag agaaccaaaa atcgtctatc 3901 ctttttaatg gcattatggg tatgatcggc ggaggtatat cagcgggagc aagtgcggca 3961 ggaggttcag ccctagggat ggcttcatca gttacaggga tgacaagcac tgcgggtaat 4021 gctgttctac agatgcaagc gatgcaagcc aagcaagccg atatagcaaa cattccgccg 4081 cagttaacga aaatgggcgg caacacagcg tttgattacg ggaatgggta cagaggtgtg 4141 tacgtcatca aaaagcaatt gaaggctgaa tacagacgaa gtctatcaag tttcttccat 4201 aaatacggat acaagattaa cagggtaaag aaaccaaatt taagaacacg aaaagcattt 4261 aactatgttc agacaaaaga ctgtttcatt tcaggggaca tcaataacaa tgacttacag 4321 gaaataagaa caattttcga taatggtatt actctttggc atactgacaa catcggaaat 4381 tacagcgtcg agaatgaatt gaggtgacac aatggcacgt aaacgcagta acacataccg 4441 atctatcaat gagatacagc gtcaaaaacg gaatagatgg tttattcact atctgaacta 4501 ccttcaatct ctagcctatc agctatttga gtgggagaac ctaccgccta cgataaaccc 4561 tagtttctta gaaaagtcta ttcatcaatt cgggtacgtg gggttctata aagaccctgt 4621 catcagttat atcgcttgta atggcgctct atcgggtcag agagacgttt acaaccaagc 4681 tacagttttt agagccgcat ctcctgtgta tcaaaaagaa ttcaagctat acaactatag 4741 agatatgaag gaagaagata tgggtgttgt tatctacaac aatgacatgg ctttccctac 4801 cacgccaacg ctagaattgt ttgcggctga attggctgaa ttaaaagaaa tcatatcggt 4861 caaccaaaac gctcaaaaga cacccgtctt aattagagcc aatgacaata accaactgag 4921 cttaaaacaa gtgtataacc agtatgaagg taatgcccct gttatcttcg ctcacgaagc 4981 tctcgacagt gactctatag aagtgtttaa gactgatgct ccctatgtgg tggacaagtt 5041 aaacgctcag aaaaatgcag tatggaatga gatgatgact ttccttggca ttaagaacgc 5101 taacctagag aagaaagagc gcatggttac ggatgaagtt tccagtaacg atgaacagat 5161 cgagtctagc ggcactgtat ttttgaagtc gagggaagaa gcatgtgaga agattaatga 5221 gctatatggt ctcaatgtta aagttaaatt cagatatgac atcgtggaac aaatgagacg 5281 tgagctacag caaatagaaa atgtttcacg tggaacatcg gacggtgaaa caaatgagta 5341 gttacacaat gcagttaaga acctacattg aaatgtggtc acagggtgag acgggtttat 5401 caaccgctga gaagatagag aaaggcagac ccaagctatt cgactttaac tatcctatct 5461 ttgacgagtc ataccgtacc attttcgaga cacatttcat tcgcaatttc tatatgcggg 5521 agatcggttt tgaaacagaa ggtttgttca agtttcattt agaaacatgg ctcatgatta 5581 atatgcccta ctttaacaag ctttttgaaa gtgagttaat caaatatgac ccacttgaaa 5641 atactcgtgt tggtgtgaag agtaacacga agaatgacac agatagaaat gataaccgag 5701 acgttaaaca agatttaaca tcgaacggaa catcatctac tgacgccaaa cagaacgaca 5761 cgagtaagac aacagggaac gaaaaaagta gcggtagcgg ctctataaca gatgacaatt 5821 tcaaacgtga tctaaatgcg gataccgctg atgaccgttt acagttaaca acaaaagacg 5881 gtgaaggtgt cctagagtac gcttctcaaa ttgaagaaca taacgagaat aagaagcgag 5941 atacaaagac aagtaataca actgacacaa ctagcaacac aacgggaaca agtacacttg 6001 attcggattc caagacatcc aacaaagcga atacaacgag taacgacaag ttaaacagtc 6061 agatcaatag cgttgaagat tacatcgaag atagagtggg taaaatcggg actcaaagtt 6121 atgctcgatt ggttatggat taccgagaag ctctactacg tatcgaacaa agaatcttta 6181 acgaaatgca agaactgttt atgcttgtgt attaaggagg acaacacatg tcaactaaac 6241 ccgaattgaa acggtttgag cagtttggag agatgatggt tcagttatat gaacggtatc 6301 taccaaccgc ctttgatgaa agtttaacat tattggagaa aatgaacaag atcatccatt 6361 acttgaatga gattggcaaa gtaacaaatg agctaatcga agaatggaac aaggtaatgg 6421 agtggattct caatgacggg ttagaagact tagtcaaaga gacgctcgaa agatggtatg 6481 aagaaggtaa attcgctgac ctcgttatcc aagttatcga cgaattgaag cagtttggtg 6541 ttagcgttaa gacctatgga gcaaagggcg acggtgtaac tgatgatatt agagcctttg 6601 aaaaggctat agagtctggt tttcctgtgt atgtgccata tggaacattc atggtttcac 6661 gtggaatcaa actacctagt aacaccgtat taaccggggc agggaaacgt aatgctgtca 6721 ttaaattcat ggatagtgtg ggacgtggag aaagtctcat gtataaccaa aatgtgacaa 6781 ctggtaacga aaatattttc ctgtcttcat tcaccctcga tggtaataat aagcgcttgg 6841 gtcagggtat ttcaggtatc ggcggttcac gggaaagtaa cctttctatc cgtgcctgtc 6901 ataacgtgta tatccgtgat attgaagctg ttgactgtac actacatgga atcgacatca 6961 catgcggtgg actcgattac ccttacttgg gtgatggtac aactgctccg aatccatcag 7021 aaaacatctg gattgaaaat tgtgaggcga ctggtttcgg tgatgatggg atcacaactc 7081 accacagcca atacatcaat atcttgaatt gttactcaca tgacccacgt ttaacagcta 7141 actgtaacgg gtttgagatt gatgacggct cacgtcacgt ggtgttaagt aataaccgtt 7201 ctaaaggctg ttacggtggt atcgagatta aagctcacgg agacgctccg gcggcttata 7261 acatctctat aaacggtcat atgtctgtag aagacgttcg gtcatataac ttccgacaca 7321 tcggtcacca tgcggctact gacccgcagt ccgtatcagc taaaaacatt gttgcttcga 7381 atcttgtatc tattagaccg aacaacaaac gtggtttcca agacaatgct acgccgaggg 7441 ttctagctgt atcagcatac tacggggttg taatcaacgg tttaacaggg tacacagatg 7501 accctaacct attgactgaa accgttgtgt ctgttcaatt tagggctaga aattgttctc 7561 ttaatggtgt tggtcttact ggattctcta actctgataa tggaatctat gtcattggcg 7621 gtagccgtgg cggagacgcc gttaatatca gtaacgttac ccttaataac tcaggtagat 7681 atggggtgtc aattggctca ggaattgaaa acgtatctat caccaatatt agcggtatcg 7741 gtgacggtat taattctcct gtagcactcg tgtcaacgat taacagtaac cctgagatta 7801 gcggattaag tagtattgga taccctacgg ctgctagagt tgcagggaca gactataacg 7861 atggtttaac actctttaat ggtgcgtttc gtgcttccac aacatctagc ggcaagattc 7921 acagtgaggg cttcatcatg ggttcaacgt cagggtgtga agcatctgtt tcaaaatcag 7981 gtgttctaac gtcatcaagc tcgaagacta gctctgagcg ttctctcata gcaggtagtt 8041 caacatctga agccaaggga acatataaca cgattttagg ttcactgggt gcggttgctg 8101 atgagcagtt tgcggcttta atttctgcgt cacaatcaag agcatcagga aaccacaact 8161 taattctatc aagttatgga attaatacaa cagggtcata caaagttaac ggtggattcg 8221 aaaagatcaa ctgggagcta gattccttaa acggtagaat taaagctcgt gacaccgtaa 8281 caggcggaaa cacatggagt gactttgccg agtattttga gagcttagac ggtcaagtca 8341 ttgaaacagg gtatctggtt actcttgaaa aaggtaaaat ccgtaaagct gaaaaaggtg 8401 aaaagatcat cggtgttatc agtgaaacag cggggtttgt ccttggtgaa tcatcatttg 8461 aatggcaggg agctgtcctt aaaaacgagt ttggcggcat catttatgag gaagtcacaa 8521 cagaagacgg cgtaaaattc aaacgaccgc ttccaagccc tgactttgac cctaataaga 8581 attatatccc acgtagtcaa cgtagagaat ggcatgttgt tggtttactg gggcagatcg 8641 ctgttagaat cgacgaaaca gttaaacaag ggcatggtat tgatgctgtt ggcggtgttg 8701 ctacagacgg cgataacttt attgtgcaag aaataactac cccgtataca aaggaaaaag 8761 gatacggtgt ggcgatcgtg ttagttaagt gaggtagtct cctatggtgt atgtatctaa 8821 taaatatctg acaatgtctg agatgaaggt caacgctcag tacattctaa actacctcag 8881 tagtaacggt tggacaaagc aagccatttg cgggatgctc ggtaatatgc aaagtgagag 8941 caccataaat ccgggattat ggcagaatct tgacgagggt aacacctcgt taggatttgg 9001 gcttgtgcaa tggacacccg ctagtaatta tatcaattgg gctaacagtc aaggcttacc 9061 atataaagac atggatagtg aattaaagcg aattatatgg gaagtaaaca ataatgctca 9121 atggataaac ttacgtgaca tgacctttaa agagtacatt aagagcacga agacgcctag 9181 agaactagcg atgatatttc tagcatctta tgagcgacct gctaacccca accaacccga 9241 acggggcgac caagccgaat actggtataa aaacctcagc ggcggcggag gcggtggact 9301 acaattagca caattcccaa tggatattat caatatatcg caaggggaaa acggtagttt 9361 ctcgcataag ggaacacttt gtatagactt tgtgggcaaa actgaaaagt acccgtatta 9421 tgctccgtgt gattgcacat gtgtatggcg gggtgatgcg agtgcatatc tagcgtggac 9481 ttctgataaa gaggttatgt gtgcggacgg aagtgttcgc tatattacat gggtaaacgt 9541 tcatgaaagt cctttgccct ttgatgttgg taagaagctc aaaaaaggcg atcttatggg 9601 acacacaggt atcggaggaa acgtaacagg cgaccattgg cacttcaatg ttattgacgg 9661 taaggagtac caaggatgga caaagaaacc tgattcgtgt ttagcaggga cagagttaca 9721 catatatgat gttttcgctg tcaacaacgt ggagataatc aacggaaacg gctacgactg 9781 gaaaactagt gattggcaag acggagacgg tggagatggc gacgacgaca acgataacaa 9841 taaaacaaaa gatttaataa cccttttact atctgacgcc ctccatggtt ggaaagcata 9901 gaaaaggaga atgggagata tgaaaatgat agcgtggatg caacactttt tagagacaga 9961 cgaaacaaag cttatttact ggttaacatt ccttatggtt tgtatggttg ttgatacagt 10021 tttaggggtg ttatttgcaa agcttaaccc aaacattaaa ttttcatcat ttaaaatcaa 10081 aacaggggtg ttgattaaag tcagtgaaat gattctagcg ttattggcta tccctttcgc 10141 tgttcctttc ctgcgggttt accccctatt atacacggtt tatacggctt tgtgtgtatc 10201 ggaaatatat tctattttcg gacatctgag attagtagat gataaaagtg attttcttga 10261 aatacttgaa aacttcttta agcgcacatc cggtaaaaat aaggaggaaa aataacatgc 10321 aaatttcaca agcgggtatc aacttaatta agagctttga gggtttacaa ctgaaagcat 10381 ataaagctgt tccgactgag aagcattaca ccattggtta cggtcattac ggttccgatg 10441 tttcacctag gcaggttatc actgctaaac aggctgaaga catgttgcgt gatgatgtgc 10501 aggcttttgt ggatggtgta aataaagcat taaaagtatc tgtcacccaa aatcaatttg 10561 atgcacttgt ctcattcgct tacaacgttg ggttaggggc tttcaggtct tcttctctac 10621 tggaatactt gaatgaagga agaacagctc tagcggcggc tgaattccct aaatggaata 10681 agtcaggcgg taaagtttat caagggttga ttaaccgtag agcacaggag caagccttgt 10741 ttaatagtgg aacacctaaa aatgtttcac gtggaacatc gtctactaaa acgacaccta 10801 agtataaggt gaagagtggt gacaacctta ctaaaatcgc taaaaagcat aatacaacgg 10861 ttgctacttt gttgaagttg aatccgagta tcaaagaccc gaacatgatt agagttggac 10921 aaacaataaa tgttacaggt agcggcggca aaacacataa ggtgaaaagt ggtgacacac 10981 tcagtaaaat tgccgttgat aacaaaacga ctgtgagtag attgatgagt ctaaaccctg 11041 aaattacgaa tccaaatcat ataaaagtag gtcaaacaat tagattaagt tgaggtgtaa 11101 atcatggaca agagtttatt ttataatcca cagaaaatgt tatcatacga tcgcatactg 11161 aactttgtta tcggtgctcg tggtatcggt aaatcatatg caatgaaggt gtaccctatt 11221 aatcgcttta ttaagtacgg agaacaattc atatatgttc gacgatacaa accggagctt 11281 gcgaaggtct ccaactattt taatgatgta gctcaagaat tccctgacca tgagttggtt 11341 gtgaagggta gaaggttcta cattgatggt aagcttgcag ggtgggctat tcctctgagt 11401 gtgtggcaga gtgaaaaatc taatgcatat cctaacgtaa gcacaatagt atttgatgag 11461 tttatcaggg agaaagacaa tagcaactat attcctaatg aggtttcagc tttactaaac 11521 cttatggaca ccgtatttcg taaccgtgag cgtgtcagat gcatttgttt aagtaatgct 11581 gtatccgttg ttaaccctta ttttctgttc ttcaaccttg tccctgatgt caacaaacgc 11641 ttcaatgtat atgacgatgc tttaattgaa atacctgata gtcttgactt ctcatctgaa 11701 aggcgtaaaa caaggtttgg gcggctaatt gatggaaccg agtacggtga gatgagttta 11761 gataaccagt ttatcggaga tagtcaggtg tttatagaaa agcgcagtaa ggatagtaag 11821 tttgtattct ccatcgtcta taatggattc actcttggtg tgtgggttga tgttaatcaa 11881 ggtcttatgt acattgatac agcacatgac ccgtcaacta agaatgtata cacattgaca 11941 acagatgatc ttaatgaaaa catgatgttg ataaccaact ataagaataa ttatcattta 12001 cgtaagttag ctagtgcgtt catgaatggt tatctgaggt ttgacaatca ggttatcaga 12061 aatatcgcat atgagttgtt tcgtaagatg cgtatacagt aatgtttcac gtggaacaat 12121 caaaagaaaa gcctatcgtc tgaggaacgg taggctcttt tgtagcatat agttgta //