GenBank-Updates@genbank.bio.net (10/10/90)
LOCUS P29LATE2 12177 bp ds-DNA PHG 10-OCT-1990
DEFINITION Bacillus phage phi-29 head morphogenesis, major head protein, head
fiber protein, tail protein, upper collar protein, lower collar
protein, pre-neck appendage protein, morphogenesis(13), lysis,
morphogenesis(15), encapsidation genes, complete cds.
ACCESSION M14782
KEYWORDS encapsidation protein; head fiber protein;
head morphogenesis protein; lower collar protein; lysis protein;
major head protein; morphogenesis protein;
pre-neck appendage protein; tail protein; upper collar protein.
SOURCE Bacteriophage phi-29 DNA.
ORGANISM Bacteriophage phi-29
Viridae; ds-DNA nonenveloped viruses; Podoviridae.
REFERENCE 1 (bases 1 to 12177)
AUTHORS Vlcek,C. and Paces,V.
TITLE Nucleotide sequence of the late region of Bacillus phage phi-29
completes the 19285-bp sequence of phi-29 genome: Comparison with
the homologous sequence of phage PZA
JOURNAL Gene 46, 215-225 (1986)
STANDARD simple staff_review
FEATURES from to/span description
pept 79 375 head morphogenesis protein
pept 406 1752 major head protein
pept 1752 2594 head fiber protein
pept 2608 4407 tail protein
pept 4412 5341 upper collar protein
pept 5334 6215 lower collar protein
pept 6228 8792 pre-neck appendage protein
pept 8804 9901 morphogenesis protein (13)
pept 9920 10315 lysis protein
pept 10317 11093 morphogenesis protein (15)
pept 11104 12102 encapsidation protein
BASE COUNT 3936 a 2256 c 2738 g 3247 t
ORIGIN
1 cccacaaatc cttatgtatc aagggttcac gtggtataat taagtagtac taatagatta
61 tagaaagagg tgaaacatat gccattaaaa ccagaagaac acgaagatat tttgaataag
121 cttttagacc ctgagttggc tcaatcagaa agaacggaag ctcttcaaca gctcagagtg
181 aactacggtt cttttgtgtc cgagtacaat gatttaacaa aatctcatga aaagttagcc
241 gctgaaaaag atgatctgat cgtgtcaaat agtaagcttt tcagacagat tggtttgaca
301 gacaaacagg aagaagatca caagaaagct gatattagtg aaacaatcac gatcgaggac
361 ttagaagcaa agtaattata atagaagaaa agaggtacaa cattcatgcg aattacattt
421 aacgacgtga aaacgtctct aggtattacc gaatcatacg acatcgtgaa tgccattcgt
481 aacagtcagg gcgataactt caaaagttat gtgccgctag caactgcgaa caacgtcgca
541 gaagtcgggg caggtatcct gatcaatcaa acggtacaaa atgatttcat cacgtccctt
601 gttgatcgta ttggacttgt ggttatccga caggtgtcgt taaacaaccc gttgaagaaa
661 ttcaagaaag gtcaaattcc tctcggtcgt actatcgaag agatttatac agacatcaca
721 aaagaaaaac agtacgatgc tgaggaagcc gaacagaagg tatttgaacg tgaaatgccg
781 aacgtcaaaa ctctcttcca cgagagaaac agacagggct tttatcatca aacaatccaa
841 gatgactcac tcaaaactgc atttgtatca tggggtaatt tcgaaagctt tgtttcttct
901 attattaatg ctatctacaa tagtgctgaa gtagacgaat acgaatatat gaaattgtta
961 gttgacaact actattcaaa agggttgttc actactgtaa aaatcgatga gccgacttct
1021 tctacagggg cattaactga atttgtgaag aaaatgcgtg cgactgctcg taaactcaca
1081 ttgccgcaag gttcccgtga ctggaactca atggctgttc gaacacgctc ttatatggaa
1141 gatttacacc taatcattga cgctgacctt gaagctgaac tagatgttga tgttttagct
1201 aaggcattca atatgaaccg tactgacttc ctcggaaatg tgacggtcat tgatggtttc
1261 gcatccactg gactagaagc tgttttagtt gacaaagact ggtttatggt gtatgacaac
1321 ctccataaaa tggagactgt tcgtaaccca cgtggcttgt actggaacta ttactaccat
1381 gtgtggcaga ccctaagcgt gtcccgtttt gccaatgccg ttgcgtttgt atctggtgat
1441 gttcctgctg ttactcaggt tattgtttct cctaacatcg ccgcagttaa gcaaggcgga
1501 caacaacaat tcactgccta tgttcgtgct acaaacgcta aagatcataa agtcgtttgg
1561 agcgttgaag gtggttcaac gggtacagct attacagggg atgggcttct ttctgtcagc
1621 ggaaacgaag ataatcagtt aacagtaaaa gcaactgttg acatcggaac agaagacaaa
1681 ccaaaactcg ttgtgggtga agctgttgta tctattcgtc cgaacaatgc ctctggaggt
1741 gctcaggcgt aatgatggtt tcatttactg cacgtgcaaa gtctaatgtt atggcatatc
1801 gtttactagc gtattcacag ggagacgaca tcatagaaat ttcacacgcc gcagaaaata
1861 ctatacctga ttacgttgcc gttaaagacg ttgacaaggg tgatctaaca caagtcaaca
1921 tgtacccttt agccgcttgg caagttatcg ccggaagtga tatcaaagtg ggcgataatc
1981 tcacaactgg taaggatggt actgctgttc ccaccgacga ccctagcacg gtttttgggt
2041 acgctgtcga agaggctcag gaaggacagc tagtcaccct cgttatcagc cgatcaaaag
2101 aaatttctat agaagtagat gatattaagg acgccggaga cactgggaaa cggttattga
2161 aaatcaatac cccgtccggt gctcgtaata tcattattga aaatgaagac gctaaagcat
2221 tgataaatgg cgaaaccacc aacacaaata agaagaacct tcaagaccta ctattttcag
2281 acggtaatgt taaggctttt ctacaagcta ccacgaccga tgagaataaa acggctcttc
2341 aacaattgtt ggttagcaac gccgatgtgc ttggtcttct gtcaggaaac ccaacatctg
2401 acaataaaat taaccttcgc acaatgatcg gggcgggcgt tccatactcg ctccccgccg
2461 ctacaacgac aacgattggc ggtgtgaaga aaggtgcggc agttacagca tctacagcaa
2521 ccgacgtggc gactgcggtt aaagacttga acagtttaat tactgtttta aagaacgcag
2581 gaatcatatc ataaggtggt ttgattaatg gcatatgtac cattatcagg aacgaacgtc
2641 aggattttag ctgacgttcc tttctctaat gattataaaa acacgagatg gttcacatct
2701 tcaagtaatc agtataactg gtttaacagg aaatcacgtg tgtatgaaat gagtaaagta
2761 acattcatgg ggtttagaga aaataaacca tatgtttcgg ttagtcttcc catagataag
2821 ctttacagtg cgtcatatat tatgtttcaa aatgcagact acggtaacaa gtggttttat
2881 gcatttgtaa ccgagttaga atttaaaaat agtgctgtta cctacgttca ctttgaaatt
2941 gatgttctcc aaacatggat gttcgatatg aaatttcaag aatcattcat tgtgagggag
3001 cacgttaaat tatggaatga cgacgggaca ccgactatca acacaattga tgagggtctc
3061 agctacggaa gtgaatacga catagtttct gtagaaaacc ataaaccata cgacgacatg
3121 atgtttctcg tgattatttc caaaagcatt atgcatggga cgccgggaga agaggaaagc
3181 aggctaaatg acataaacgc aagcctgaac ggcatgccgc aacctctctg ctactatatt
3241 cacccattct acaaagatgg taaagttcct aaaacgtata tcggagataa caacgctaac
3301 ttgtctccta ttgtcaatat gctcaccaat atcttttcac agaagagcgc tgttaacgat
3361 attgtcaata tgtatgtgac tgattatatt ggtttgaagc ttgactataa aaatggtgat
3421 aaagaattga agctcgataa agacatgttt gaacaggcgg gtatagctga tgataaacac
3481 ggtaacgttg acaccatctt tgtgaagaaa atacctgatt atgaagccct agaaatagac
3541 acaggtgata aatggggtgg cttcacaaaa gaccaagaaa gcaaactgat gatgtaccct
3601 tactgcgtta cggaaataac tgactttaaa ggcaaccata tgaatctgaa aaccgagtac
3661 atcaataaca gtaaactaaa gatacaggtt aggggttcac taggggtcag taacaaggtt
3721 gcctacagtg ttcaggatta taacgcagat agcgcattga gtggcggcaa tagattgact
3781 gcgtctctag attcatcctt aatcaacaac aacccaaatg acatagcaat actaaatgac
3841 tatctatctg cttatttaca gggcaacaaa aattcactag agaaccaaaa atcgtctatc
3901 ctttttaatg gcattatggg tatgatcggc ggaggtatat cagcgggagc aagtgcggca
3961 ggaggttcag ccctagggat ggcttcatca gttacaggga tgacaagcac tgcgggtaat
4021 gctgttctac agatgcaagc gatgcaagcc aagcaagccg atatagcaaa cattccgccg
4081 cagttaacga aaatgggcgg caacacagcg tttgattacg ggaatgggta cagaggtgtg
4141 tacgtcatca aaaagcaatt gaaggctgaa tacagacgaa gtctatcaag tttcttccat
4201 aaatacggat acaagattaa cagggtaaag aaaccaaatt taagaacacg aaaagcattt
4261 aactatgttc agacaaaaga ctgtttcatt tcaggggaca tcaataacaa tgacttacag
4321 gaaataagaa caattttcga taatggtatt actctttggc atactgacaa catcggaaat
4381 tacagcgtcg agaatgaatt gaggtgacac aatggcacgt aaacgcagta acacataccg
4441 atctatcaat gagatacagc gtcaaaaacg gaatagatgg tttattcact atctgaacta
4501 ccttcaatct ctagcctatc agctatttga gtgggagaac ctaccgccta cgataaaccc
4561 tagtttctta gaaaagtcta ttcatcaatt cgggtacgtg gggttctata aagaccctgt
4621 catcagttat atcgcttgta atggcgctct atcgggtcag agagacgttt acaaccaagc
4681 tacagttttt agagccgcat ctcctgtgta tcaaaaagaa ttcaagctat acaactatag
4741 agatatgaag gaagaagata tgggtgttgt tatctacaac aatgacatgg ctttccctac
4801 cacgccaacg ctagaattgt ttgcggctga attggctgaa ttaaaagaaa tcatatcggt
4861 caaccaaaac gctcaaaaga cacccgtctt aattagagcc aatgacaata accaactgag
4921 cttaaaacaa gtgtataacc agtatgaagg taatgcccct gttatcttcg ctcacgaagc
4981 tctcgacagt gactctatag aagtgtttaa gactgatgct ccctatgtgg tggacaagtt
5041 aaacgctcag aaaaatgcag tatggaatga gatgatgact ttccttggca ttaagaacgc
5101 taacctagag aagaaagagc gcatggttac ggatgaagtt tccagtaacg atgaacagat
5161 cgagtctagc ggcactgtat ttttgaagtc gagggaagaa gcatgtgaga agattaatga
5221 gctatatggt ctcaatgtta aagttaaatt cagatatgac atcgtggaac aaatgagacg
5281 tgagctacag caaatagaaa atgtttcacg tggaacatcg gacggtgaaa caaatgagta
5341 gttacacaat gcagttaaga acctacattg aaatgtggtc acagggtgag acgggtttat
5401 caaccgctga gaagatagag aaaggcagac ccaagctatt cgactttaac tatcctatct
5461 ttgacgagtc ataccgtacc attttcgaga cacatttcat tcgcaatttc tatatgcggg
5521 agatcggttt tgaaacagaa ggtttgttca agtttcattt agaaacatgg ctcatgatta
5581 atatgcccta ctttaacaag ctttttgaaa gtgagttaat caaatatgac ccacttgaaa
5641 atactcgtgt tggtgtgaag agtaacacga agaatgacac agatagaaat gataaccgag
5701 acgttaaaca agatttaaca tcgaacggaa catcatctac tgacgccaaa cagaacgaca
5761 cgagtaagac aacagggaac gaaaaaagta gcggtagcgg ctctataaca gatgacaatt
5821 tcaaacgtga tctaaatgcg gataccgctg atgaccgttt acagttaaca acaaaagacg
5881 gtgaaggtgt cctagagtac gcttctcaaa ttgaagaaca taacgagaat aagaagcgag
5941 atacaaagac aagtaataca actgacacaa ctagcaacac aacgggaaca agtacacttg
6001 attcggattc caagacatcc aacaaagcga atacaacgag taacgacaag ttaaacagtc
6061 agatcaatag cgttgaagat tacatcgaag atagagtggg taaaatcggg actcaaagtt
6121 atgctcgatt ggttatggat taccgagaag ctctactacg tatcgaacaa agaatcttta
6181 acgaaatgca agaactgttt atgcttgtgt attaaggagg acaacacatg tcaactaaac
6241 ccgaattgaa acggtttgag cagtttggag agatgatggt tcagttatat gaacggtatc
6301 taccaaccgc ctttgatgaa agtttaacat tattggagaa aatgaacaag atcatccatt
6361 acttgaatga gattggcaaa gtaacaaatg agctaatcga agaatggaac aaggtaatgg
6421 agtggattct caatgacggg ttagaagact tagtcaaaga gacgctcgaa agatggtatg
6481 aagaaggtaa attcgctgac ctcgttatcc aagttatcga cgaattgaag cagtttggtg
6541 ttagcgttaa gacctatgga gcaaagggcg acggtgtaac tgatgatatt agagcctttg
6601 aaaaggctat agagtctggt tttcctgtgt atgtgccata tggaacattc atggtttcac
6661 gtggaatcaa actacctagt aacaccgtat taaccggggc agggaaacgt aatgctgtca
6721 ttaaattcat ggatagtgtg ggacgtggag aaagtctcat gtataaccaa aatgtgacaa
6781 ctggtaacga aaatattttc ctgtcttcat tcaccctcga tggtaataat aagcgcttgg
6841 gtcagggtat ttcaggtatc ggcggttcac gggaaagtaa cctttctatc cgtgcctgtc
6901 ataacgtgta tatccgtgat attgaagctg ttgactgtac actacatgga atcgacatca
6961 catgcggtgg actcgattac ccttacttgg gtgatggtac aactgctccg aatccatcag
7021 aaaacatctg gattgaaaat tgtgaggcga ctggtttcgg tgatgatggg atcacaactc
7081 accacagcca atacatcaat atcttgaatt gttactcaca tgacccacgt ttaacagcta
7141 actgtaacgg gtttgagatt gatgacggct cacgtcacgt ggtgttaagt aataaccgtt
7201 ctaaaggctg ttacggtggt atcgagatta aagctcacgg agacgctccg gcggcttata
7261 acatctctat aaacggtcat atgtctgtag aagacgttcg gtcatataac ttccgacaca
7321 tcggtcacca tgcggctact gacccgcagt ccgtatcagc taaaaacatt gttgcttcga
7381 atcttgtatc tattagaccg aacaacaaac gtggtttcca agacaatgct acgccgaggg
7441 ttctagctgt atcagcatac tacggggttg taatcaacgg tttaacaggg tacacagatg
7501 accctaacct attgactgaa accgttgtgt ctgttcaatt tagggctaga aattgttctc
7561 ttaatggtgt tggtcttact ggattctcta actctgataa tggaatctat gtcattggcg
7621 gtagccgtgg cggagacgcc gttaatatca gtaacgttac ccttaataac tcaggtagat
7681 atggggtgtc aattggctca ggaattgaaa acgtatctat caccaatatt agcggtatcg
7741 gtgacggtat taattctcct gtagcactcg tgtcaacgat taacagtaac cctgagatta
7801 gcggattaag tagtattgga taccctacgg ctgctagagt tgcagggaca gactataacg
7861 atggtttaac actctttaat ggtgcgtttc gtgcttccac aacatctagc ggcaagattc
7921 acagtgaggg cttcatcatg ggttcaacgt cagggtgtga agcatctgtt tcaaaatcag
7981 gtgttctaac gtcatcaagc tcgaagacta gctctgagcg ttctctcata gcaggtagtt
8041 caacatctga agccaaggga acatataaca cgattttagg ttcactgggt gcggttgctg
8101 atgagcagtt tgcggcttta atttctgcgt cacaatcaag agcatcagga aaccacaact
8161 taattctatc aagttatgga attaatacaa cagggtcata caaagttaac ggtggattcg
8221 aaaagatcaa ctgggagcta gattccttaa acggtagaat taaagctcgt gacaccgtaa
8281 caggcggaaa cacatggagt gactttgccg agtattttga gagcttagac ggtcaagtca
8341 ttgaaacagg gtatctggtt actcttgaaa aaggtaaaat ccgtaaagct gaaaaaggtg
8401 aaaagatcat cggtgttatc agtgaaacag cggggtttgt ccttggtgaa tcatcatttg
8461 aatggcaggg agctgtcctt aaaaacgagt ttggcggcat catttatgag gaagtcacaa
8521 cagaagacgg cgtaaaattc aaacgaccgc ttccaagccc tgactttgac cctaataaga
8581 attatatccc acgtagtcaa cgtagagaat ggcatgttgt tggtttactg gggcagatcg
8641 ctgttagaat cgacgaaaca gttaaacaag ggcatggtat tgatgctgtt ggcggtgttg
8701 ctacagacgg cgataacttt attgtgcaag aaataactac cccgtataca aaggaaaaag
8761 gatacggtgt ggcgatcgtg ttagttaagt gaggtagtct cctatggtgt atgtatctaa
8821 taaatatctg acaatgtctg agatgaaggt caacgctcag tacattctaa actacctcag
8881 tagtaacggt tggacaaagc aagccatttg cgggatgctc ggtaatatgc aaagtgagag
8941 caccataaat ccgggattat ggcagaatct tgacgagggt aacacctcgt taggatttgg
9001 gcttgtgcaa tggacacccg ctagtaatta tatcaattgg gctaacagtc aaggcttacc
9061 atataaagac atggatagtg aattaaagcg aattatatgg gaagtaaaca ataatgctca
9121 atggataaac ttacgtgaca tgacctttaa agagtacatt aagagcacga agacgcctag
9181 agaactagcg atgatatttc tagcatctta tgagcgacct gctaacccca accaacccga
9241 acggggcgac caagccgaat actggtataa aaacctcagc ggcggcggag gcggtggact
9301 acaattagca caattcccaa tggatattat caatatatcg caaggggaaa acggtagttt
9361 ctcgcataag ggaacacttt gtatagactt tgtgggcaaa actgaaaagt acccgtatta
9421 tgctccgtgt gattgcacat gtgtatggcg gggtgatgcg agtgcatatc tagcgtggac
9481 ttctgataaa gaggttatgt gtgcggacgg aagtgttcgc tatattacat gggtaaacgt
9541 tcatgaaagt cctttgccct ttgatgttgg taagaagctc aaaaaaggcg atcttatggg
9601 acacacaggt atcggaggaa acgtaacagg cgaccattgg cacttcaatg ttattgacgg
9661 taaggagtac caaggatgga caaagaaacc tgattcgtgt ttagcaggga cagagttaca
9721 catatatgat gttttcgctg tcaacaacgt ggagataatc aacggaaacg gctacgactg
9781 gaaaactagt gattggcaag acggagacgg tggagatggc gacgacgaca acgataacaa
9841 taaaacaaaa gatttaataa cccttttact atctgacgcc ctccatggtt ggaaagcata
9901 gaaaaggaga atgggagata tgaaaatgat agcgtggatg caacactttt tagagacaga
9961 cgaaacaaag cttatttact ggttaacatt ccttatggtt tgtatggttg ttgatacagt
10021 tttaggggtg ttatttgcaa agcttaaccc aaacattaaa ttttcatcat ttaaaatcaa
10081 aacaggggtg ttgattaaag tcagtgaaat gattctagcg ttattggcta tccctttcgc
10141 tgttcctttc ctgcgggttt accccctatt atacacggtt tatacggctt tgtgtgtatc
10201 ggaaatatat tctattttcg gacatctgag attagtagat gataaaagtg attttcttga
10261 aatacttgaa aacttcttta agcgcacatc cggtaaaaat aaggaggaaa aataacatgc
10321 aaatttcaca agcgggtatc aacttaatta agagctttga gggtttacaa ctgaaagcat
10381 ataaagctgt tccgactgag aagcattaca ccattggtta cggtcattac ggttccgatg
10441 tttcacctag gcaggttatc actgctaaac aggctgaaga catgttgcgt gatgatgtgc
10501 aggcttttgt ggatggtgta aataaagcat taaaagtatc tgtcacccaa aatcaatttg
10561 atgcacttgt ctcattcgct tacaacgttg ggttaggggc tttcaggtct tcttctctac
10621 tggaatactt gaatgaagga agaacagctc tagcggcggc tgaattccct aaatggaata
10681 agtcaggcgg taaagtttat caagggttga ttaaccgtag agcacaggag caagccttgt
10741 ttaatagtgg aacacctaaa aatgtttcac gtggaacatc gtctactaaa acgacaccta
10801 agtataaggt gaagagtggt gacaacctta ctaaaatcgc taaaaagcat aatacaacgg
10861 ttgctacttt gttgaagttg aatccgagta tcaaagaccc gaacatgatt agagttggac
10921 aaacaataaa tgttacaggt agcggcggca aaacacataa ggtgaaaagt ggtgacacac
10981 tcagtaaaat tgccgttgat aacaaaacga ctgtgagtag attgatgagt ctaaaccctg
11041 aaattacgaa tccaaatcat ataaaagtag gtcaaacaat tagattaagt tgaggtgtaa
11101 atcatggaca agagtttatt ttataatcca cagaaaatgt tatcatacga tcgcatactg
11161 aactttgtta tcggtgctcg tggtatcggt aaatcatatg caatgaaggt gtaccctatt
11221 aatcgcttta ttaagtacgg agaacaattc atatatgttc gacgatacaa accggagctt
11281 gcgaaggtct ccaactattt taatgatgta gctcaagaat tccctgacca tgagttggtt
11341 gtgaagggta gaaggttcta cattgatggt aagcttgcag ggtgggctat tcctctgagt
11401 gtgtggcaga gtgaaaaatc taatgcatat cctaacgtaa gcacaatagt atttgatgag
11461 tttatcaggg agaaagacaa tagcaactat attcctaatg aggtttcagc tttactaaac
11521 cttatggaca ccgtatttcg taaccgtgag cgtgtcagat gcatttgttt aagtaatgct
11581 gtatccgttg ttaaccctta ttttctgttc ttcaaccttg tccctgatgt caacaaacgc
11641 ttcaatgtat atgacgatgc tttaattgaa atacctgata gtcttgactt ctcatctgaa
11701 aggcgtaaaa caaggtttgg gcggctaatt gatggaaccg agtacggtga gatgagttta
11761 gataaccagt ttatcggaga tagtcaggtg tttatagaaa agcgcagtaa ggatagtaag
11821 tttgtattct ccatcgtcta taatggattc actcttggtg tgtgggttga tgttaatcaa
11881 ggtcttatgt acattgatac agcacatgac ccgtcaacta agaatgtata cacattgaca
11941 acagatgatc ttaatgaaaa catgatgttg ataaccaact ataagaataa ttatcattta
12001 cgtaagttag ctagtgcgtt catgaatggt tatctgaggt ttgacaatca ggttatcaga
12061 aatatcgcat atgagttgtt tcgtaagatg cgtatacagt aatgtttcac gtggaacaat
12121 caaaagaaaa gcctatcgtc tgaggaacgg taggctcttt tgtagcatat agttgta
//