GenBank-Updates@genbank.bio.net (01/12/91)
LOCUS ECO67RTDM 11334 bp ds-DNA BCT 12-JAN-1991 DEFINITION E.coli retron Ec67 DNA encodong reverse transcriptase and Dam methylase functions. ACCESSION M55249 KEYWORDS Dam methylase; reverse transcriptase. SOURCE E.coli retron Ec67 DNA. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (bases 1 to 11334) AUTHORS Hsu,M.-Y., Inouye,M. and Inouye,S. TITLE Retron for the 67-base multicopy single-stranded DNA from Escherichia coli: A potential transposable element encoding both reverse transcriptase and Dam methylase functions JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 9454-9458 (1990) STANDARD full staff_entry FEATURES Location/Qualifiers CDS complement(29..625) /note="ORFi" /codon_start=29 CDS 616..939 /note="ORFa" /codon_start=616 CDS complement(796..1110) /note="ORFh" /codon_start=796 CDS 975..1484 /note="ORFb" /codon_start=975 CDS 1656..1997 /note="ORFc" /codon_start=1656 CDS 2522..2824 /note="ORFd" /codon_start=2522 CDS 2821..3678 /note="ORF1-dam" /codon_start=2821 /product="Dam methylase" CDS 3164..3496 /note="ORFj" /codon_start=3164 CDS 3734..5137 /note="ORF2" /codon_start=3734 CDS 5017..5628 /note="ORF3" /codon_start=5017 CDS 5625..6089 /note="ORFe" /codon_start=5625 CDS 6369..6674 /note="ORFf" /codon_start=6369 CDS complement(6886..7203) /note="ORFg" /codon_start=6886 CDS 7839..9599 /note="ORF4-Ec67 RT" /codon_start=7839 CDS complement(9687..10667) /note="ORF5" /codon_start=9687 BASE COUNT 3091 a 2463 c 2774 g 3006 t ORIGIN 1 gaattcattt ttaaatcctt ttactatatc aatttgaaac tattgtactt cttatacaag 61 caaccacttc aatatcagaa aatgcacatt caaagctatt ctctgtagtt gtaattttaa 121 tcataccttt tggaagcttt gtgatttttc gaatggaata ggttccgtcg atgttgatta 181 accagtgtcc atcaagtact tcagaaaatt tttgatcaca aatgtatgtg acaagcccat 241 cctgaataac aattggtgat gaaagatttg caggaagaaa tgatgaatcg aatacatatg 301 aaccatcttc aatcattttg cctgcggtaa ggcgaaactt gggaagctct tctgtggcta 361 ctgtcagcga gctttgctta agtccttgcc cggtggttaa ccatttcagt gaggttcctg 421 tttcaagagc acattggatt atccagtctg caggaaacgt atcccgcaaa tacctgttcg 481 ccagagtgct ttttgatact tccaagtgat cagctaaagc ctgtcgtgtc gtaaagccat 541 aagcttcgac taatcgctca atcgcagcct taccaccttt attgggattt attttgatct 601 cacttgggta ctttgatgtt gacatatctc ttttgcgatc ctagtatcag ttttgtcccc 661 atttgggtac ttgtcacgat tactacaggc tcaccacaag ccaataggag atgttgcatc 721 atgaccccta acatttcaat aactctgaat acgccacatg tcacaattga gcgttatagc 781 gaacttactg gtctttcaat cgacacaatt aacgatatgc tggctgacgg tcgcatccct 841 cggcatcgcc ttcggaaaga caagaaaaga gaaaaggtga tgatcaacct tgctgctctt 901 accgttgatg cacttactga ttgcaatgtt gtattcaact agttccattt tgggatacat 961 caggggtgtc gaccatgttt gattaccaag tttccaaaca tccacatttt gatgaagcct 1021 gtcgtgcatt cgcattgcgc cacaacctgg tgcaactggc agaacgtgct ggcatgaatg 1081 tgcagattct gcggaacaag ctgaacccat ctcaacctca tttattaacc gcaccagaaa 1141 tctggctgct taccgatctg actgaagatt caacgctggt agatggtttt ctggcacaga 1201 ttcactgcct gccatgtgta ccgattaatg aggttgcaaa agagaaactg ccgcattacg 1261 tcatgagcgc aactgcagag atcggacgtg ttgcagcagg tgcggtatct ggtgatgtaa 1321 aaactagtgc cggtcgtcgt gatgctatca gcagcattaa ctctgtaaca cgactgatgg 1381 cgctggctgc tgtttcattg caggcccgtt tacaggctaa tcctgcgatg gcgagtgcag 1441 ttgataccgt gactggcctc ggtgcttcat tcggtttgct gtgaggtgct tatgctgacg 1501 aaagaaccat catttgcatc gctgctggta aaacaaagcc cggcaatgca ctacggtcac 1561 ggctggatca tgggtgagga tggtaaacgc tggcatccgt gccgttcaca agatgaattg 1621 ctggcagaac tatctacgaa aaaacggggg aacaaatggc tattgaaggc gctgcggcga 1681 ctgttccatt aagccccggt gaacgcctga atggacttaa tcacattgcg gaattaaggg 1741 cgaaagtatt tggcctgaat attgagtcag agcttgagcg gtttattaaa gatatgcgtg 1801 atccacggga tatcaataat gaacaaaata aacgagcact ggctgccata ttctttatgg 1861 caaaaattcc agctgaacgt catagcatca gcattaatga gctgaccact gacgaaaagc 1921 gggagttgat taaagcaatg aatcattttc gtgcagtggt gagcttattt cccagacggc 1981 taaccatgcc gaattaacca actaatgaaa ttaatggcgt aaacccgccg ggtatccctt 2041 tatctaaatt caggagaatt gattatgcgt aatattgaaa ctctcacgac taaaaccgga 2101 ccggatgatg cagggcttaa tattttactg acagaggctc gtctggaaga acgccgggca 2161 agggctgaag caatggcagc tcgccttgat agcctggcgt gtcatatcac atcccgccag 2221 ctaaaccacg tcgaagcagc agaactgctg cgtgtaactg ctgaagcaat ccagaacgaa 2281 gcgcaggaga tccactaatg gctgatgcaa tggatctcgt acagcagcgc gttgaagaag 2341 aacgccagcg ccatatccgt gctgcccgtg ccaaaacgcc gggcgtgtcc cgcgtgcttt 2401 gcattgagtg tgaagcgcca attccgccag cacgccgccg tgccattccg ggtgtgcagc 2461 tttgcattac ctgtcaggaa atcgcagagc tgaaaggcaa acattacaac ggaggtgctg 2521 tatgacaagg gcagtgcgta tccatcaatt aaaaattgca cctaagtatt tcaacgctgt 2581 ggttgcaggt caaaagacgg ctgaacttcg taaagacgat cgtggctata aagttggtga 2641 tgttctttct ctttgcgaat ggaagcatgg cgtatttacg ggtagggaat gggccgctgt 2701 tatctctcat gtgcttccgg ttaatgacgt catggcagtt tcagaacaat gggtgatgct 2761 atcaattcgc ccattaaccc cattagaagc tttaggatat gttattgcag gaggtgctgt 2821 atgagcacca tcctgaaatg ggcgggaaat aaaaccgcca ttatgtccga actgaaaaaa 2881 caccttcctg ctggcccgcg actggttgaa cctttcgcgg gttcctgtgc tgtgatgatg 2941 gcgacggatt accccagcta tctggttgcg gatattaatc ctgatttaat caacctctat 3001 aaaaagattg ccgctgattg cgaggcgttt atatctcgcg ccagagtttt atttgagatc 3061 gcaaacaggg aggtggctta ttacaacata aggcaggagt ttaattactc aactgaaatt 3121 actgatttca tgaaagcggt atatttcctg tatctcaatc gtcatggtta ccgtgggtta 3181 tgtcgctata acaagagcgg gcatttcaac attccctacg ggaattataa aaatccgtat 3241 ttccctgaaa aagaaattcg caaatttgca gaaaaagccc agcgagcaac gtttatctgc 3301 gccagctttg atgaaacgct ggcgatgctg caggtggggg atgtggtgta ttgcgatccg 3361 ccttatgacg gtacgttttc cggctatcac actgacggct tcactgaaga tgaccagtat 3421 cacctggcat ctgttcttga atatcgatca tcagaaggtc atccagtcat tgtttctaac 3481 agtgacacat ccctgatccg ttcgctgtat cgcaatttca ctcaccacta catcaaggca 3541 aaacgcagca tcggcgtgtc ggctggcgag agtaaatctg caacagaaat cattgctgtt 3601 tccggggcgc gctgctgggt gggatttgat ccttcgcgtg gcgtggatag ttctgctgtg 3661 tacgaggtgc gtgtatgagt catgccgata tgagcgactc tagcggcttt aacgaggccg 3721 ctgcagcatt ttcatggaac ggcccgaaaa aggccataaa cccttatctg gacccggcgg 3781 aagttgcgcc gtttctgcgc tttcaaacct gatcactctg tatgctgccg ataacgagca 3841 ggaacagctg cgccgcgagg aattgagtga acaggtctgg gagcgttatt tctttaatga 3901 atcccgtgat cctgtccagc gcgaaatgga gcaggataag ctcattagtc gggcaaagct 3961 ggcgcatgag cagcagcgtt ttaacccgga catggtcatt ctggcggacg tcagcgccca 4021 gcccacccat atcagcaagc cgctgatgca acgtatcgaa tacttcagca gcctgggcag 4081 gccaaaggct tattcccgct atttgcgtga gacgattaag ccatgtctgg agcgactgga 4141 ttgtgtacgt gacagtcagc tatctgcttc tttccgtttt atggcaagcc atcaagggct 4201 ggagggcctg ctgatcctgc ctgaaatgag tcaggatcag gtgaaacgcc tgtccaccct 4261 ggtagcagcg catatgagca tgtgtcttga ggccgcttgt ggtgatttgt atgccaccga 4321 tgacgttaag ccagaagaaa tccgcaagac atgggaaaag gtggcagcgg aaaccctgcg 4381 tctggatgtt atcccgcctg cgtttgagaa acttcgtcgg aaaagaaacc gccgcaaacc 4441 cgtgccctat gaactcatac cgggttcgct ggcacgtatg ctttgcgccg actggtggta 4501 tcggaaattg tggaagatgc gttgcgaatg gcgggaagag cagttgcgtg ctgtctgtct 4561 ggtcagcaaa aaagcatctc cctatgtcag ctatgaagca gtgacacata aacgtgagca 4621 gcgccgcaag tcgctggagt ttttccgttc tcatgaactg gtgaatgaag acggagacac 4681 gctggatatg gaggatgtgg taaacgccag cagcagcaat ccggcgcatc gccgcaatga 4741 gatgatggcc tgtgttaaag gtctggagct tatcgcagaa atgcgcggtg actgcgccgt 4801 tttctacact atcacctgtc cgtcacgttt ccattccacg ctcaacaacg gcagacccaa 4861 cccgacctgg acaaatgcga cggtaagaca aagcagcgat tatctggtcg gcatgtttgc 4921 tgcatttcgt aaggctatgc aaccaaagcc gggttgcgct ggtatggcgt gcgggtggct 4981 gagccgcacc atgacggtac tgtgcactgg catctcatgt gtttcatgcg caaaaaagac 5041 cgccgcgcca ttactgcatt gttgcgtaag tttgccatcc gtgaagaccg tgaggaactg 5101 ggcaataaca cggggccacg ctttaagtct gagctgataa acccgcgcaa aggaacgccg 5161 acaagctaca tcgcgaaata catcagtaag aacattgacg gacgtggtct ggctggcgag 5221 atcagcaagg aaacgggtaa atccctgcgt gataacgccg aatacgtgaa tgcctgggcg 5281 tctctacatc gtgttcagca gttccgcttc tttggtattc cggggcgtca ggcgtaccgt 5341 gaacttcgct tgctggctgg tcaggcggca aggcaacagg gtgacaaaaa agcaagtacg 5401 ccgatactgg atgacccgcg ccttgatgcc atcctggctg ccgctgatgc tggctgtttt 5461 gccacctaca tcatgaagca gggcgcgtac tggttccccg caaatatcac cttatcagaa 5521 cagcttatga aattaacgaa gagccgaccg cttatggcga tcacggtatt cgtatttatg 5581 gcatctggtc acccattgta cagggcaaga tctgcactca tgcaatgaaa tggaaaatgg 5641 ttcgtaaggc cgttgacgtt caggaggcgg cagccgacca gggcgcttgc gccccttgga 5701 ctcgtggcaa taactgtccc cttgctgaaa atttgaacca acaggagaaa gataaatcag 5761 ctgatgggga caccagaacg gacattaccc gcatggatga caaggagttg cacgatcacc 5821 tgcacagtat gagcaaaaaa gagcgccggg aactggctgc aaggttacgc ctggttaaac 5881 cgatacggcg taaagactac aaacagcgaa ttacagatca tcagcgacag cagctcgttt 5941 atgagctgaa gtccagagga tttgatggca gcgagaaaga ggtcgattta ctccttcgcg 6001 gcggcagtat tccgtcagga gcaggcctgc gtatcttcta tcggaaccag cgtctgcagg 6061 aggatgataa atggcggaac ctgtattaat tacgctggtt aacaattcgt gctcttaata 6121 ataccaggca tatcaggctg atgagcgtaa aaaaacgttt tacatcagta agattattat 6181 atactgtaaa tataaacagt ggttatgtgt acagtattgc ttgtggtgtc ataggaggaa 6241 aaatgcagga ctattttttg gagtctttga agctccagcg cattgatttt tttcttaagc 6301 ttgtagcggc tagtgagtgt agtgatgaag agaaggggct ggcctgcagt gggtttctga 6361 actgacagat gaactcatgg caaaaatcag aacccacgaa tacaaccgct caatggatgt 6421 catcagttga ggtgactttt atgcgcattg aaataatgat cgataaagag cagaagatta 6481 gccagtctac cctggacgcc cttgaatccg agctttaccg caatctgcgc cccctgtatc 6541 ccaaaacggt aattcgtatc cgtaaaggta gctctaacgg tgtggaactg accggactgc 6601 aactggatga agaaagaaaa caagtgatga aaattatgca gaaggtgtgg gaagacgaca 6661 gctggctgca ttaagaaacg ttgcccccag gaggattcat tctgatgggg gctagtttgg 6721 gcaacgagtg aaacgaggcg taaggtgggt gggcattttg ataagtgatc gtccgctttg 6781 tgtcagaagc agaagtggga gtgtctgaga ctctctaaaa gttgatgatt cacttacaaa 6841 accattttcc tgatgaatgc ttacacttac gaatgatcat tctgtttagt cttcatgaga 6901 aaatcccgaa tctttgccaa gtttgaattt tcggggattg aatccatgta cggattcacg 6961 ctcaaacact aattgctcag attcaacgaa agcctgccac tctactgggt ctagctcaaa 7021 tcccattgct gtcatatcac tttcatcttc cccctcgatc cagtggacta aataaaacaa 7081 ttcatcatca ggagaatcat cctcaccatc aacaatatca acatcggtta cagtgatacg 7141 tagggtggga tcgatttttg agacataaat tcctaactgt ggtatagggg gaatattgtt 7201 catggaaact ccttttattg gtgtttgcta tttgaataaa aatacgccaa acagagtgtt 7261 aactgtgaat atggaaagaa tcgttgtaag tacccgctta ggtgtcccat tctattttag 7321 aggttctcgt gcatatggat tatgttatct gaaagctaac ttccgcttcc cgttcacagc 7381 gaacattcat ctttgtaaac ccgtatgatc cgtttttcaa gtggccattc agatacggat 7441 tttcacttcc ttgacagtgc atgactatgc tgcatgaaat cgcatgatcg attgaggatc 7501 gtctttgctc agatccgcca gaactggcgg gcttttgctc atgtcatgca tgtgcatgaa 7561 aaccactgca taaagcgggc aggcgtggcg gggatacgag cgcgcgctat caccgaaaat 7621 agccaaaata cttctggaaa acagaaagtt gaagtgatat gttcataaac acgcatgtag 7681 gcagatttgt tggttgtgaa tcgcaaccag tggccttaat ggcaggagga atcgcctccc 7741 taaaatcctt gattcagagc tatacggcag gtgtgctgtg cgaaggagtg cctgcatgcg 7801 tttctccttg gccttttttc ctctgggatg aagaagaaat gacaaaaaca tctaaacttg 7861 acgcacttag ggctgctact tcacgtgaag acttggctaa aattttagat attaagttgg 7921 tatttttaac taacgttcta tatagaatcg gctcggataa tcaatacact caatttacaa 7981 taccgaagaa aggaaaaggg gtaaggacta tttctgcacc tacagaccgg ttgaaggaca 8041 tccaacgaag aatatgtgac ttactttctg attgtagaga tgagatcttt gctataagga 8101 aaattagtaa caactattcc tttggttttg agaggggaaa atcaataatc ctaaatgctt 8161 ataagcatag aggcaaacaa ataatattaa atatagatct taaggatttt tttgaaagct 8221 ttaattttgg acgagttaga ggatattttc tttccaatca ggatttttta ttaaatcctg 8281 tggtggcaac gacacttgca aaagctgcat gctataatgg aaccctcccc caaggaagtc 8341 catgttctcc tattatctca aatctaattt gcaatattat ggatatgaga ttagctaagc 8401 tggctaaaaa atatggatgt acttatagca gatatgctga tgatataaca atttctacaa 8461 ataaaaatac atttccgtta gaaatggcta ctgtgcaacc tgaaggggtt gttttgggaa 8521 aagttttggt aaaagaaata gaaaactctg gattcgaaat aaatgattca aagactaggc 8581 ttacgtataa gacatcaagg caagaagtaa cgggacttac agttaacaga atcgttaata 8641 ttgatagatg ttattataaa aaaactcggg cgttggcaca tgctttgtat cgtacaggtg 8701 aatataaagt gccagatgaa aatggtgttt tagtttcagg aggtctggat aaacttgagg 8761 ggatgtttgg ttttattgat caagttgata agtttaacaa tataaagaaa aaactgaaca 8821 agcaacctga tagatatgta ttgactaatg cgactttgca tggttttaaa ttaaagttga 8881 atgcgcgaga aaaagcatat agtaaattta tttactataa attttttcat ggcaacacct 8941 gtcctacgat aattacagaa gggaagactg atcggatata tttgaaggct gctttgcatt 9001 ctttggagac atcatatcct gagttgttta gagaaaaaac agatagtaaa aagaaagaaa 9061 taaatcttaa tatatttaaa tctaatgaaa agaccaaata ttttttagat ctttctgggg 9121 gaactgcaga tctgaaaaaa tttgtagagc gttataaaaa taattatgct tcttattatg 9181 gttctgttcc aaaacagcca gtgattatgg ttcttgataa tgatacaggt ccaagcgatt 9241 tacttaattt tctgcgcaat aaagttaaaa gctgcccaga cgatgtaact gaaatgagaa 9301 agatgaaata tattcatgtt ttctataatt tatatatagt tctcacacca ttgagtcctt 9361 ccggcgaaca aacttcaatg gaggatcttt tccctaaaga tattttagat atcaagattg 9421 atggtaagaa attcaacaaa aataatgatg gagactcaaa aacggaatat gggaagcata 9481 ttttttccat gagggttgtt agagataaaa agcggaaaat agattttaag gcattttgtt 9541 gtatttttga tgctataaaa gatataaagg aacattataa attaatgtta aatagctaat 9601 gaacagccct aacgttatga acgctaaggc tgatttttcg ttaaaattta tatggtttga 9661 attgtaatat attatcttca agccatttat ttaattcctg catccttttc tgtaagggta 9721 ttaattcgtt cctcacaaac actaaactcg ctttttccac atccccaaac ccccctaaca 9781 ttattcggca taatccccat catttgcggt ggcacacgat gcgctgccat catgtcatcg 9841 cggctgacat ttttgatatt cagaaactca tccttcgccg cgacttctga caatgggatg 9901 atctgaagtc cgtccttttt gccgttaggc gagtacataa acagattgcg gaagttacct 9961 ggtcctttgg cgcttttcat cgcattgcgg aggttgttca catcctcctg gttctgcgca 10021 gcatcggtca tgtacatgat gaagcctgca tgactgccgt taatgtaata cttgcggcgg 10081 aacagcgtgg cggactcgtt gagcagagct gacggaatgg cagaaagata accgggcagg 10141 ccgtagatct cctggttgat gtccggttcc aacagatgaa agatgctgcc tttcgtgaac 10201 tgatacggct gggttgtcat accgtattgc acaaaccagt aggtatccag gtctaacccg 10261 cgtcgggtgt attttgccag cgcaggctca agagcgatga cctctccgaa gcggttcgtg 10321 cgtttttcca ggtaggcgtt accaaaaacc agatagtcct gtacaaaacg cgaaaaagcc 10381 tgctggctga gcagcgggtg agggatgtag gtgctggtca gaatgttgca tttcaccgca 10441 attggtgaac tgtgatgcac ggcagcgcgg aaggtgcgcg ccagtccgtc aaagctgaca 10501 ggaggctcat accagcgatc tgtctgtacg cattccacat agtccagcag ttcgcggcgg 10561 tcaagtacag gaacgggatc accgaagctg aatgcttcgg ctgaagtctg gcttttatgc 10621 ttgagctgat tcgtcgccgc agcgcggttt ttcttactct ttcccatcaa aaaatctcca 10681 caatattgct ggtattggcg gattcgccct gcagcggttc gttaaacaat gcgtgcatcg 10741 ttgcccaggc cagatcggcg tggctggctt cttcgctgcg gctggcttca taggtcgggc 10801 ggttgccgct ggcggtggtg gcgcgacgga ttgccatgaa ggactgcgca atgtcggtgt 10861 gtccggcgtc aaattctagg cggcggtgac tgataatgtc gtaggccttg agtaccaggg 10921 cgtttttaac gttggggttg tagacaaact cccggacggc aggaaagaat gctttcacgt 10981 tctcgtaaac cccgtggccg acgccagttg agtcgatgcc gatgtatgtc acgttgtact 11041 gttcggtcag ttttttgatg gcgtcagcct ggcgcggaag tccatcccgc gccactggtg 11101 acgctcaaga atgcggaact taccgcccgg cacggctggc ggtgccacca ccacgcaccc 11161 ggccgtgtcg ccgttttgcg taccttttgc cgggtcataa ccgatccaca cttcgcgcca 11221 gccaaacggg cgcagggcca gtgcatgaaa gtcggtccag acttcccagc tgtccaccat 11281 gcacgcctgc agctcgctga gcgggaacac ggacgcgaga tcgtccacga attc //