GenBank-Updates@genbank.bio.net (01/17/91)
LOCUS STYFIMD 2609 bp ds-DNA BCT 17-JAN-1991
DEFINITION S.typhimurium outer membrane protein (fimD) gene, complete cds.
ACCESSION M37853
KEYWORDS outer membrane protein.
SOURCE Salmonella typhimurium (LT-2) DNA.
ORGANISM Salmonella typhimurium
Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively
anaerobic rods; Enterobacteriaceae.
REFERENCE 1 (bases 1 to 2609)
AUTHORS Rioux,C.R., Friedrich,M.J. and Kadner,R.J.
TITLE Genes on the 90-kilobase plasmid of salmonella typhimurium confer
low-affinity cobalamin transport: relationship to fimbria
biosynthesis genes
JOURNAL J. Bacteriol. 172, 6217-6222 (1990)
STANDARD simple staff_entry
COMMENT Draft entry and computer-readable sequence for [Unpublished (1990)]
kindly submitted
by R.J.Kadner, 27-JUL-1990.
Univ Virginia
Dept Microbiol/Box 441
Sch of Med
Charlotesville, VA 22908
FEATURES Location/Qualifiers
sig_peptide 74..146
/gene="fimD"
/codon_start=74
CDS 74..2482
/note="product is homologous to the E.coli PapC and FaeD
proteins, which are involved in fimbriae/pili synthesis"
/gene="fimD"
/codon_start=74
/product="outer membrane protein"
mat_peptide 147..2479
/gene="fimD"
/codon_start=147
/product="outer membrane protein"
BASE COUNT 558 a 730 c 797 g 524 t
ORIGIN
1 cctgtttaac aggaaattgt attttccgtg caatttcctc cggagaggga ctgcctgagt
61 caggggggtt gttgtgtcat ttcatcaccg ggtatttaaa ctgtcggcgc tgagtctcgc
121 cttattttct cacctatctt ttgccagcac tgactcagag ctgaacctgg atttcctgca
181 gggaatgagc gccattccct ccgtattaaa atccggctcg gattttccgg ccggacagta
241 ttatgtcgac gtcattgtta accaggaaaa cgtgggtaaa gcccgtttgt ccattacgcc
301 acaggaagaa tcagcaaatg ccctgtgcct gtcgccggag tggctgaaag ctgccggggt
361 tcctgtccgc ctggagggat atgcctccac gctgaatgct gccgggcagt gctatgtcct
421 cagccgcaac ccctatacca gggtggactt cagctatggc tcccagagct tggtgttcag
481 tattccccag tcgttcctgg tcggtaaaac ggaccccagc cgctgggact acggcgtgcc
541 ggcggcacgc ctgaagtact ccgccaacgc ctcgcagacg tccgggcaaa gcaccagtgc
601 ctatgcaaat gccgacctga tggtcaacct cggacgctgg gtgctggcca gtaacatgag
661 cgcatcccgg tacgctgacg gctccggtga gttcaccgcc cgggatatca cgctgtccac
721 cgccatcagc caagtgcagg gggacctgct gctcggtaaa tcccagaccc gcagcgccct
781 gttctctgat ttcggctttt acggggcggc actgcgctcc aacagtaaca tgctgccgtg
841 ggaggcccgc gggtatgccc cgcttatcac cggggtggcg aactccacct cccgcgtcac
901 catcagccag aacgggtacg ccgtgtactc aaaagtggtg ccgcccggtc cgtaccagct
961 ggatgatgtc cgctccgtgg ggaacggtga cctggtggtg accgtggagg atgcgtccgg
1021 ccacaaaacc accaccgtct atccggtcac caccctgccg acgctgctgc gtcccgggga
1081 ggttgaatac aatgtggcgg tcggtcgcaa gtccagtaac tataagctga aaaaaccgtt
1141 cgctgacggt gaaaacggca tgttctggat gggaagcgtg gggtacggct ttgattccac
1201 cacgctgaat gccgcttcta tcctgcacgg taaataccag gccggcgggg tgagcgtgac
1261 gcaggccctg ggcggcttcg gcgccgtgtc cgccgggatg aacctgtcac aggcgaaata
1321 cgacaacgga gacaacaaac gcgggcacag cgtcagcgcc aagtatgcca aaagcttctc
1381 tgacagctcg gacctgcagt tgctggccta ccgttaccag agtaaggggt atgtggagtt
1441 cgcagacttc tacagtacag accggtatac ccgctacaac acaaaatcac gctatgagat
1501 gcgcttctcg caacgcttgg ggaacagtaa cctgaatctg gccggctggc aggaggacta
1561 ctggtggatg aaaggaaagg ccatcggagg cgatgtttcc ctcagtacca ccattctgga
1621 cggtgtgtcg gtcttcctga acggcagcta cagtaaacgc ccgtacctgg acaaaccgga
1681 ctacagcacg tcgctctcct ttagcattcc gttcaccctg ggtgggattc gccattacag
1741 cagtaccgga ctgagctaca acagcagcgg caggatgggg atgaacagcg gggtgtcggc
1801 aagtccgacg gaccgcctga gctacggcct gaacaccaac ctgagtgata agggcgaccg
1861 cagcctgagc ggcaacctct cgtatggctt tgatgccatc cagaccaaca tgatgctgtc
1921 gcagggacgt gataacacca ccgtgtcagg cagcgtgagc ggcacaattc tgggcacggc
1981 agacagcggc ctgatgatga cgaaggaaac cggtaacacg ctgggcgtgg cgcgcattcc
2041 gggggtgaag ggcgtgagga ttaacggctc agcccccacc aacagcaagg gatacaccgt
2101 ggtgaacctg tcggattact ccctgaaccg ggtcagcgtg gacatggaaa acgtgccgga
2161 tgacctggag ctgcagacca cctcctttaa cgtggtgccg acggaaaaag ctgtcgtgta
2221 ccgggagttt ggcgccgagc atgtgctgcg ctacatcctg cgggtgaagg agcgtgacgg
2281 acggatattg aacgggggca gcgcgcagac ggagcaggga ctggatgccg ggttcattgc
2341 cggtaacggc gtcctgctga tgaatatgct gagcgcgccg tcacgggtca gcgtcgagcg
2401 gggggacggc agtgtctgcc atttttcagt gaaaggtatt gtgcctaata ccggcaaagt
2461 tcaggaggtt tattgtgaat aagatgatga agtggggact ggtgtccctg ctgtccctgg
2521 ccgtcagcgg gcaggccatg gcagcctttg tgctgaacgg cacgcgtttt atctatgagg
2581 aagggagaaa gaacacctca tttgaggtg
//