GenBank-Updates@genbank.bio.net (01/17/91)
LOCUS STYFIMD 2609 bp ds-DNA BCT 17-JAN-1991 DEFINITION S.typhimurium outer membrane protein (fimD) gene, complete cds. ACCESSION M37853 KEYWORDS outer membrane protein. SOURCE Salmonella typhimurium (LT-2) DNA. ORGANISM Salmonella typhimurium Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (bases 1 to 2609) AUTHORS Rioux,C.R., Friedrich,M.J. and Kadner,R.J. TITLE Genes on the 90-kilobase plasmid of salmonella typhimurium confer low-affinity cobalamin transport: relationship to fimbria biosynthesis genes JOURNAL J. Bacteriol. 172, 6217-6222 (1990) STANDARD simple staff_entry COMMENT Draft entry and computer-readable sequence for [Unpublished (1990)] kindly submitted by R.J.Kadner, 27-JUL-1990. Univ Virginia Dept Microbiol/Box 441 Sch of Med Charlotesville, VA 22908 FEATURES Location/Qualifiers sig_peptide 74..146 /gene="fimD" /codon_start=74 CDS 74..2482 /note="product is homologous to the E.coli PapC and FaeD proteins, which are involved in fimbriae/pili synthesis" /gene="fimD" /codon_start=74 /product="outer membrane protein" mat_peptide 147..2479 /gene="fimD" /codon_start=147 /product="outer membrane protein" BASE COUNT 558 a 730 c 797 g 524 t ORIGIN 1 cctgtttaac aggaaattgt attttccgtg caatttcctc cggagaggga ctgcctgagt 61 caggggggtt gttgtgtcat ttcatcaccg ggtatttaaa ctgtcggcgc tgagtctcgc 121 cttattttct cacctatctt ttgccagcac tgactcagag ctgaacctgg atttcctgca 181 gggaatgagc gccattccct ccgtattaaa atccggctcg gattttccgg ccggacagta 241 ttatgtcgac gtcattgtta accaggaaaa cgtgggtaaa gcccgtttgt ccattacgcc 301 acaggaagaa tcagcaaatg ccctgtgcct gtcgccggag tggctgaaag ctgccggggt 361 tcctgtccgc ctggagggat atgcctccac gctgaatgct gccgggcagt gctatgtcct 421 cagccgcaac ccctatacca gggtggactt cagctatggc tcccagagct tggtgttcag 481 tattccccag tcgttcctgg tcggtaaaac ggaccccagc cgctgggact acggcgtgcc 541 ggcggcacgc ctgaagtact ccgccaacgc ctcgcagacg tccgggcaaa gcaccagtgc 601 ctatgcaaat gccgacctga tggtcaacct cggacgctgg gtgctggcca gtaacatgag 661 cgcatcccgg tacgctgacg gctccggtga gttcaccgcc cgggatatca cgctgtccac 721 cgccatcagc caagtgcagg gggacctgct gctcggtaaa tcccagaccc gcagcgccct 781 gttctctgat ttcggctttt acggggcggc actgcgctcc aacagtaaca tgctgccgtg 841 ggaggcccgc gggtatgccc cgcttatcac cggggtggcg aactccacct cccgcgtcac 901 catcagccag aacgggtacg ccgtgtactc aaaagtggtg ccgcccggtc cgtaccagct 961 ggatgatgtc cgctccgtgg ggaacggtga cctggtggtg accgtggagg atgcgtccgg 1021 ccacaaaacc accaccgtct atccggtcac caccctgccg acgctgctgc gtcccgggga 1081 ggttgaatac aatgtggcgg tcggtcgcaa gtccagtaac tataagctga aaaaaccgtt 1141 cgctgacggt gaaaacggca tgttctggat gggaagcgtg gggtacggct ttgattccac 1201 cacgctgaat gccgcttcta tcctgcacgg taaataccag gccggcgggg tgagcgtgac 1261 gcaggccctg ggcggcttcg gcgccgtgtc cgccgggatg aacctgtcac aggcgaaata 1321 cgacaacgga gacaacaaac gcgggcacag cgtcagcgcc aagtatgcca aaagcttctc 1381 tgacagctcg gacctgcagt tgctggccta ccgttaccag agtaaggggt atgtggagtt 1441 cgcagacttc tacagtacag accggtatac ccgctacaac acaaaatcac gctatgagat 1501 gcgcttctcg caacgcttgg ggaacagtaa cctgaatctg gccggctggc aggaggacta 1561 ctggtggatg aaaggaaagg ccatcggagg cgatgtttcc ctcagtacca ccattctgga 1621 cggtgtgtcg gtcttcctga acggcagcta cagtaaacgc ccgtacctgg acaaaccgga 1681 ctacagcacg tcgctctcct ttagcattcc gttcaccctg ggtgggattc gccattacag 1741 cagtaccgga ctgagctaca acagcagcgg caggatgggg atgaacagcg gggtgtcggc 1801 aagtccgacg gaccgcctga gctacggcct gaacaccaac ctgagtgata agggcgaccg 1861 cagcctgagc ggcaacctct cgtatggctt tgatgccatc cagaccaaca tgatgctgtc 1921 gcagggacgt gataacacca ccgtgtcagg cagcgtgagc ggcacaattc tgggcacggc 1981 agacagcggc ctgatgatga cgaaggaaac cggtaacacg ctgggcgtgg cgcgcattcc 2041 gggggtgaag ggcgtgagga ttaacggctc agcccccacc aacagcaagg gatacaccgt 2101 ggtgaacctg tcggattact ccctgaaccg ggtcagcgtg gacatggaaa acgtgccgga 2161 tgacctggag ctgcagacca cctcctttaa cgtggtgccg acggaaaaag ctgtcgtgta 2221 ccgggagttt ggcgccgagc atgtgctgcg ctacatcctg cgggtgaagg agcgtgacgg 2281 acggatattg aacgggggca gcgcgcagac ggagcaggga ctggatgccg ggttcattgc 2341 cggtaacggc gtcctgctga tgaatatgct gagcgcgccg tcacgggtca gcgtcgagcg 2401 gggggacggc agtgtctgcc atttttcagt gaaaggtatt gtgcctaata ccggcaaagt 2461 tcaggaggtt tattgtgaat aagatgatga agtggggact ggtgtccctg ctgtccctgg 2521 ccgtcagcgg gcaggccatg gcagcctttg tgctgaacgg cacgcgtttt atctatgagg 2581 aagggagaaa gaacacctca tttgaggtg //