GenBank-Updates@genbank.bio.net (01/31/91)
LOCUS ECOPROT 4248 bp ds-DNA BCT 31-JAN-1991 DEFINITION E.coli ATP-dependent protease binding subunit (clpB) gene, complete cds, and 16S rRNA gene, 5' end. ACCESSION M29364 J01699 KEYWORDS 16S ribosomal RNA; ATP-binding protein; ATP-dependent protease; ATP-protease. SOURCE E.coli (strain K-12), clone pLC[23,30]. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (bases 3131 to 4248) AUTHORS Shen,W.-F., Squires,C. and Squires,C.L. TITLE Nucleotide sequence of the rrnG ribosomal RNA promoter region of Escherichia coli JOURNAL Nucleic Acids Res. 10, 3303-3313 (1982) STANDARD simple staff_review REFERENCE 2 (bases 1 to 3130) AUTHORS Squires,C., Ross,B.M. and Squires,C.L. TITLE The clpB gene of E.coli specifies an ATP-dependent protease subunit JOURNAL Unpublished (1989) 701 Fairchild Bldg. Columbia U., NY NY 10027 STANDARD simple staff_review COMMENT Draft entry and computer-readable sequence for [Unpublished (1989) 701 Fairchild Bldg. Columbia U., NY NY 10027] kindly submitted by C.L.Squires, 23-OCT-1989. FEATURES Location/Qualifiers CDS <1..427 /note="unidentified reading frame 1 (AA at 2)" misc_signal 491..495 /note="-35 region (put.)" misc_signal 514..520 /note="-10 region (put.)" mRNA 525..3160 /note="clpB mRNA" CDS 557..3130 /note="ATP-dependent protease binding subunit" misc_signal 3133..3159 /note="ORF-BG transcription terminator" rRNA 3572..>4248 /note="16S rRNA (rrnG)" BASE COUNT 1098 a 965 c 1201 g 984 t ORIGIN 57 minutes on the K12 map 1 agatgactgc cgactgcctc cctgtgctgt ttttgcaatc gacgggaacg aagtcgccgc 61 cgctcatgct ggctggcgtg gactgtgcgc aggcgtgctg gaagagacgg tttcctgttt 121 tgctgataat ccggaaaata ttctcgcctg gttagggccg gcaattggtc cacgcgcgtt 181 cgaagtgggg ggggaggttc gcgaggcgtt tatggcagta gacgctaaag caagtgcagc 241 tttcattcag catggtgata agtatctggc ggatatttat cagcttgccc ggcagcgtct 301 ggcgaacgtg ggtgttgagc aaattttcgg cggcgaccgt tgtacatata cggaaaatga 361 gactttcttc tcttatcgtc gcgacaagac caccggtcgt atggcaagtt tcatttggct 421 gatataacct aaagaatcaa gacgatccgg tacgcgtgat tttcttttca cattaatctg 481 gtcaataacc ttgaataatt gagggatgac ctcatttaat ctccagtagc aactttgatc 541 cgttatggga ggagttatgc gtctggatcg tcttactaat aaattccagc ttgctcttgc 601 cgatgcccaa tcacttgcac tcgggcacga caaccaattt atcgaaccac ttcatttaat 661 gagcgccctg ctgaatcagg aagggggttc ggttagtcct ttattaacat ccgctggcat 721 aaatgctggc cagttgcgca cagatatcaa tcaggcatta aatcgtttac cgcaggttga 781 aggtactggt ggtgatgtcc agccatcaca ggatctggtg cgcgttctta atctttgcga 841 caacgtggcg caaaaacgtg gtgataactt tatctcgtca gaactgttcg ttctggcggc 901 acttgagtct cgcggcaccg tggccgacat cctgaaagca gcaggggcga ccaccgccaa 961 cattactcaa gcgattgaac aaatgcgtgg aggtgaaagc gtgaacgatc aaggtgctga 1021 agaccaacgt caggctttga aaaaatatac catcgacctt accgaacgag ccgaacaggg 1081 caaactcgat ccggtgattg gtcgtgatga agaaattcgc cgtaccattc aggtgctgca 1141 acgtcgtact aaaaataacc cggtactgat tggtgaaccc ggcgtcggta aaactgccat 1201 cgttgaaggt ctggcgcagc gtattatcaa cggcgaagtg ccggaagggt tgaaaggccg 1261 ccgggtactg gcgctggata tgggcgcgct ggtggctggg gcgaaatatc gcggtgagtt 1321 tgaagaacgt ttaaaaggcg tgcttaacga tcttgccaaa caggaaggca acgtcatcct 1381 atttatcgac gaattacata ccatggtcgg cgcgggtaaa gccgatggcg caatggacgc 1441 cggaaacatg ctgaaaccgg cgctggcgcg tggtgaattg cactgcgtag gtgccacgac 1501 gcttgacgaa tatcgccagt acattgaaaa agatgctgcg ctggaacgtc gtttccagaa 1561 agtgtttgtt gccgagcctt ctgttgaaga taccattgcg attctgcgtg gcctgaaaga 1621 acgttacgaa ttgcaccacc atgtgcaaat tactgacccg gcaattgttg cagcggcgac 1681 gttgtctcat cgctacattg ctgaccgtca gctgccggat aaagccatcg acctgatcga 1741 tgaagcagca tccagcattc gtatgcagat tgactcaaaa ccagaagaac tcgaccgact 1801 cgatcgtcgt atcatccagc tcaaactgga acaacaggcg ttaatgaaag agtctgatga 1861 agccagtaaa aaacgtctgg atatgctcaa cgaagaactg agcgacaaag aacgtcagta 1921 ctccgagtta gaagaagagt ggaaagcaga gaaggcatcg ctttctggta cgcagaccat 1981 taaagcggaa ctggaacagg cgaaaatcgc tattgaacag gctcgccgtg tgggggacct 2041 ggcgcggatg tctgaactgc aatacggcaa aatcccggaa ctggaaaagc aactggaagc 2101 cgcaacgcag ctcgaaggca aaactatgcg tctgttgcgt aataaagtga ccgacgccga 2161 aattgctgaa gtgctggcgc gttggacggg gattccggtt tctcgcatga tggaaagcga 2221 gcgcgaaaaa ctgctgcgta tggagcaaga actgcaccat cgcgtaattg gtcagaacga 2281 agcggttgat gcggtatcta acgctattcg tcgtagccgt gcggggctgg cggatccaaa 2341 tcgcccgatt ggttcattcc tgttcctcgg cccaactggt gtggggaaaa cagagctttg 2401 taaggcgctg gcgaacttta tgtttgatag cgacgaggcg atggtccgta tcgatatgtc 2461 cgagtttatg gagaaacact cggtgtctcg tttggttggt gcgcctccgg gatatgtcgg 2521 ttatgaagaa ggtggctacc tgaccgaagc ggtgcgtcgt cgtccgtatt ccgtcatcct 2581 gctggatgaa gtggaaaaag cgcatccgga tgtcttcaac attctgttgc aggtactgga 2641 tgatgggcgt ctgactgacg ggcaagggag aacggtcgac ttccgtaata cggtcgtcat 2701 tatgacctct aacctcggtt ccgatctgat tcaggaacgc ttcggtgaac tggattatgc 2761 gcacatgaaa gagctggtgc tcggtgtggt aagccataac ttccgtccgg aattcattaa 2821 ccgtatcgat gaagtggtgg tcttccatcc gctgggtgaa cagcacattg cctcgattgc 2881 gcagattcag ttgaaacgtc tgtacaaacg tctggaagaa cgtggttatg aaatccacat 2941 ttctgacgag gcgctgaaac tgctgagcga gaacggttac gatccggtct atggtgcacg 3001 tcctctgaaa cgtgcaattc agcagcagat cgaaaacccg ctggcacagc aaatactgtc 3061 tggtgaattg gttccgggta aagtgattcg cctggaagtt aatgaagacc ggattgtcgc 3121 cgtccagtaa atgataaaac gagcccttcg gggctcgttt ttgtctataa gttagacgga 3181 aaagactata tttaagatgt tttgcctgaa aagtgagcga acgataaagt ttttatattt 3241 ttcgcttgtc aggccggaat aactccctat aatgcgccac cactgacacg gaacaacggc 3301 aaacacgccg ccgggtcggc ggggttctcc tgagaatctc aacagagaaa agcaaagaaa 3361 tgcttgactc tgtagcggga aggcgtatta tgcacaccgc cgcgccgctg agaaaaagcg 3421 aagcggcact gctctttaac aatttatcag acaatctgtg tgggcactcg aagatacgga 3481 ttcttaacgt cgcaagacga aaaatgaata ccaagtctca agagtgaaca cgtaattcat 3541 tacgaagttt aattctttga gcatcaaact tttaaattga agagtttgat catggctcag 3601 attgaacgct ggcggcaggc ctaacacatg caagtcgaac ggtaacagga agcagcttgc 3661 tcttcgctga cgagtggcgg acgggtgagt aatgtctggg aagctgcctg atggaggggg 3721 ataactactg gaaacggtag ctaataccgc ataatgtcgc aagaccaaag agggggacct 3781 tcgggcctct tgccatcgga tgtgcccaga tgggattagc ttgttggtgg ggtaacggct 3841 cacctaggcg acgatcccta gctggtctga gaggatgacc agccacactg gaactgagac 3901 acggtccaga ctcctacggg aggcagcagt ggggaatatt gcacaatggg cgcaagcctg 3961 atgcagccat gccgcgtgta tgaagaaggc cttcgggttg taaagtactt tcagcgggga 4021 ggaagggagt aaagttaata cctttgctca ttgacgttac ccgcagaaga agcaccggct 4081 aactccgtgc cagcagccgc ggtaatacgg agggtgcaag cgttaatcgg aattactggg 4141 cgtaaagcgc acgcaggcgg tttgttaagt cagatgtgaa atccccgggc tcaacctggg 4201 aactgcatct gatactggca agcttgagtc tcgtagaggg gggtagaa //
GenBank-Updates@genbank.bio.net (02/01/91)
LOCUS ECOPROT 4248 bp ds-DNA BCT 01-FEB-1991 DEFINITION E.coli ATP-dependent protease binding subunit (clpB) gene, complete cds, and 16S rRNA gene, 5' end. ACCESSION M29364 J01699 V00350 KEYWORDS 16S ribosomal RNA; ATP-binding protein; ATP-dependent protease; ATP-protease. SOURCE E.coli (strain K-12), clone pLC[23,30]. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (bases 3131 to 4248) AUTHORS Shen,W.-F., Squires,C. and Squires,C.L. TITLE Nucleotide sequence of the rrnG ribosomal RNA promoter region of Escherichia coli JOURNAL Nucleic Acids Res. 10, 3303-3313 (1982) STANDARD simple staff_review REFERENCE 2 (bases 1 to 3130) AUTHORS Squires,C., Ross,B.M. and Squires,C.L. TITLE The clpB gene of E.coli specifies an ATP-dependent protease subunit JOURNAL Unpublished (1989) 701 Fairchild Bldg. Columbia U., NY NY 10027 STANDARD simple staff_review COMMENT Draft entry and computer-readable sequence for [Unpublished (1989) 701 Fairchild Bldg. Columbia U., NY NY 10027] kindly submitted by C.L.Squires, 23-OCT-1989. FEATURES Location/Qualifiers CDS <1..427 /note="unidentified reading frame 1 (AA at 2)" misc_signal 491..495 /note="-35 region (put.)" misc_signal 514..520 /note="-10 region (put.)" mRNA 525..3160 /note="clpB mRNA" CDS 557..3130 /note="ATP-dependent protease binding subunit" misc_signal 3133..3159 /note="ORF-BG transcription terminator" rRNA 3572..>4248 /note="16S rRNA (rrnG)" BASE COUNT 1098 a 965 c 1201 g 984 t ORIGIN 57 minutes on the K12 map 1 agatgactgc cgactgcctc cctgtgctgt ttttgcaatc gacgggaacg aagtcgccgc 61 cgctcatgct ggctggcgtg gactgtgcgc aggcgtgctg gaagagacgg tttcctgttt 121 tgctgataat ccggaaaata ttctcgcctg gttagggccg gcaattggtc cacgcgcgtt 181 cgaagtgggg ggggaggttc gcgaggcgtt tatggcagta gacgctaaag caagtgcagc 241 tttcattcag catggtgata agtatctggc ggatatttat cagcttgccc ggcagcgtct 301 ggcgaacgtg ggtgttgagc aaattttcgg cggcgaccgt tgtacatata cggaaaatga 361 gactttcttc tcttatcgtc gcgacaagac caccggtcgt atggcaagtt tcatttggct 421 gatataacct aaagaatcaa gacgatccgg tacgcgtgat tttcttttca cattaatctg 481 gtcaataacc ttgaataatt gagggatgac ctcatttaat ctccagtagc aactttgatc 541 cgttatggga ggagttatgc gtctggatcg tcttactaat aaattccagc ttgctcttgc 601 cgatgcccaa tcacttgcac tcgggcacga caaccaattt atcgaaccac ttcatttaat 661 gagcgccctg ctgaatcagg aagggggttc ggttagtcct ttattaacat ccgctggcat 721 aaatgctggc cagttgcgca cagatatcaa tcaggcatta aatcgtttac cgcaggttga 781 aggtactggt ggtgatgtcc agccatcaca ggatctggtg cgcgttctta atctttgcga 841 caacgtggcg caaaaacgtg gtgataactt tatctcgtca gaactgttcg ttctggcggc 901 acttgagtct cgcggcaccg tggccgacat cctgaaagca gcaggggcga ccaccgccaa 961 cattactcaa gcgattgaac aaatgcgtgg aggtgaaagc gtgaacgatc aaggtgctga 1021 agaccaacgt caggctttga aaaaatatac catcgacctt accgaacgag ccgaacaggg 1081 caaactcgat ccggtgattg gtcgtgatga agaaattcgc cgtaccattc aggtgctgca 1141 acgtcgtact aaaaataacc cggtactgat tggtgaaccc ggcgtcggta aaactgccat 1201 cgttgaaggt ctggcgcagc gtattatcaa cggcgaagtg ccggaagggt tgaaaggccg 1261 ccgggtactg gcgctggata tgggcgcgct ggtggctggg gcgaaatatc gcggtgagtt 1321 tgaagaacgt ttaaaaggcg tgcttaacga tcttgccaaa caggaaggca acgtcatcct 1381 atttatcgac gaattacata ccatggtcgg cgcgggtaaa gccgatggcg caatggacgc 1441 cggaaacatg ctgaaaccgg cgctggcgcg tggtgaattg cactgcgtag gtgccacgac 1501 gcttgacgaa tatcgccagt acattgaaaa agatgctgcg ctggaacgtc gtttccagaa 1561 agtgtttgtt gccgagcctt ctgttgaaga taccattgcg attctgcgtg gcctgaaaga 1621 acgttacgaa ttgcaccacc atgtgcaaat tactgacccg gcaattgttg cagcggcgac 1681 gttgtctcat cgctacattg ctgaccgtca gctgccggat aaagccatcg acctgatcga 1741 tgaagcagca tccagcattc gtatgcagat tgactcaaaa ccagaagaac tcgaccgact 1801 cgatcgtcgt atcatccagc tcaaactgga acaacaggcg ttaatgaaag agtctgatga 1861 agccagtaaa aaacgtctgg atatgctcaa cgaagaactg agcgacaaag aacgtcagta 1921 ctccgagtta gaagaagagt ggaaagcaga gaaggcatcg ctttctggta cgcagaccat 1981 taaagcggaa ctggaacagg cgaaaatcgc tattgaacag gctcgccgtg tgggggacct 2041 ggcgcggatg tctgaactgc aatacggcaa aatcccggaa ctggaaaagc aactggaagc 2101 cgcaacgcag ctcgaaggca aaactatgcg tctgttgcgt aataaagtga ccgacgccga 2161 aattgctgaa gtgctggcgc gttggacggg gattccggtt tctcgcatga tggaaagcga 2221 gcgcgaaaaa ctgctgcgta tggagcaaga actgcaccat cgcgtaattg gtcagaacga 2281 agcggttgat gcggtatcta acgctattcg tcgtagccgt gcggggctgg cggatccaaa 2341 tcgcccgatt ggttcattcc tgttcctcgg cccaactggt gtggggaaaa cagagctttg 2401 taaggcgctg gcgaacttta tgtttgatag cgacgaggcg atggtccgta tcgatatgtc 2461 cgagtttatg gagaaacact cggtgtctcg tttggttggt gcgcctccgg gatatgtcgg 2521 ttatgaagaa ggtggctacc tgaccgaagc ggtgcgtcgt cgtccgtatt ccgtcatcct 2581 gctggatgaa gtggaaaaag cgcatccgga tgtcttcaac attctgttgc aggtactgga 2641 tgatgggcgt ctgactgacg ggcaagggag aacggtcgac ttccgtaata cggtcgtcat 2701 tatgacctct aacctcggtt ccgatctgat tcaggaacgc ttcggtgaac tggattatgc 2761 gcacatgaaa gagctggtgc tcggtgtggt aagccataac ttccgtccgg aattcattaa 2821 ccgtatcgat gaagtggtgg tcttccatcc gctgggtgaa cagcacattg cctcgattgc 2881 gcagattcag ttgaaacgtc tgtacaaacg tctggaagaa cgtggttatg aaatccacat 2941 ttctgacgag gcgctgaaac tgctgagcga gaacggttac gatccggtct atggtgcacg 3001 tcctctgaaa cgtgcaattc agcagcagat cgaaaacccg ctggcacagc aaatactgtc 3061 tggtgaattg gttccgggta aagtgattcg cctggaagtt aatgaagacc ggattgtcgc 3121 cgtccagtaa atgataaaac gagcccttcg gggctcgttt ttgtctataa gttagacgga 3181 aaagactata tttaagatgt tttgcctgaa aagtgagcga acgataaagt ttttatattt 3241 ttcgcttgtc aggccggaat aactccctat aatgcgccac cactgacacg gaacaacggc 3301 aaacacgccg ccgggtcggc ggggttctcc tgagaatctc aacagagaaa agcaaagaaa 3361 tgcttgactc tgtagcggga aggcgtatta tgcacaccgc cgcgccgctg agaaaaagcg 3421 aagcggcact gctctttaac aatttatcag acaatctgtg tgggcactcg aagatacgga 3481 ttcttaacgt cgcaagacga aaaatgaata ccaagtctca agagtgaaca cgtaattcat 3541 tacgaagttt aattctttga gcatcaaact tttaaattga agagtttgat catggctcag 3601 attgaacgct ggcggcaggc ctaacacatg caagtcgaac ggtaacagga agcagcttgc 3661 tcttcgctga cgagtggcgg acgggtgagt aatgtctggg aagctgcctg atggaggggg 3721 ataactactg gaaacggtag ctaataccgc ataatgtcgc aagaccaaag agggggacct 3781 tcgggcctct tgccatcgga tgtgcccaga tgggattagc ttgttggtgg ggtaacggct 3841 cacctaggcg acgatcccta gctggtctga gaggatgacc agccacactg gaactgagac 3901 acggtccaga ctcctacggg aggcagcagt ggggaatatt gcacaatggg cgcaagcctg 3961 atgcagccat gccgcgtgta tgaagaaggc cttcgggttg taaagtactt tcagcgggga 4021 ggaagggagt aaagttaata cctttgctca ttgacgttac ccgcagaaga agcaccggct 4081 aactccgtgc cagcagccgc ggtaatacgg agggtgcaag cgttaatcgg aattactggg 4141 cgtaaagcgc acgcaggcgg tttgttaagt cagatgtgaa atccccgggc tcaacctggg 4201 aactgcatct gatactggca agcttgagtc tcgtagaggg gggtagaa //