GenBank-Updates@genbank.bio.net (02/02/91)
LOCUS HIV2GH1 9480 bp ds-DNA VRL 02-FEB-1991 DEFINITION Human immunodeficiency virus type 2 proviral DNA, gag, pol, vif, vpX, vpR, tat, rev, env and nef genes. ACCESSION M30895 D00477 KEYWORDS . SOURCE Human immunodeficiency virus type 2 MOLT-4 cell (isolate GH1) proviral DNA, clone 8. ORGANISM Human immunodeficiency virus type 2 Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Retroviridae; Lentivirinae. REFERENCE 1 (bases 1 to 9480) AUTHORS Hasegawa,A., Tsujimoto,H., Maki,N., Ishikawa,K.-., Miura,T., Fukasawa,M., Miki,K. and Hayami,M. TITLE Genomic divergence of HIV-2 from Ghana JOURNAL AIDS Res. Hum. Retroviruses 5, 593-604 (1989) STANDARD full staff_review COMMENT GH1 was isolated from a Ghanian AIDS patient; virus was cloned in MOLT-4 clone 8 cells. FEATURES Location/Qualifiers CDS <1770..4937 /note="pol polyprotein" CDS join(5843..6138,8281..8377) /note="tat protein" CDS join(6069..6138,8281..8522) /note="rev protein" CDS 544..2112 /note="gag polyprotein" CDS 4867..5514 /note="vif protein" CDS 5342..5680 /note="vpX protein" CDS 5680..5997 /note="vpR protein" exon 5843..6138 /note="tat protein, exon 2 (first expressed exon)" exon 6069..6138 /note="rev protein, exon 2 (first expressed exon)" CDS 6148..8364 /note="env polyprotein (see COMMENT)" exon 8281..8377 /note="tat protein, exon 3 (AA at 8282)" exon 8281..8522 /note="rev protein, exon 3 (AA at 8283)" CDS 8540..9307 /note="nef protein" BASE COUNT 3257 a 1957 c 2349 g 1917 t ORIGIN 1 cagtcgctct ggcagaggct ggcagattga gccctgggag gttctctcca gcactagcag 61 gtagagcctg ggtgttccct gctagactct caccagtgct tggccggcac tgggcagacg 121 gctccacgct tgcttgctta aagacctctt aataaagctg ccaattagaa gcaagttaag 181 tgtgtgttcc catctctcct agtcgccgcc tggtcattcg gtgttcatct gaataacaag 241 accctggtct gttaggaccc ttccgctttg ggaatccaag gcaggaaaat ccctagcagg 301 ttggcgccca acagggactt gaaagggact gagaagccct ggaacacggc tagtgaaggt 361 agtaaggcgg caggaacaaa ccacgacgga gtgctcctag aaaagcgcgg gccgaggtac 421 caaaggcggc gtgtggagcg ggagtgaaag aggcctccgg gtgaaggtaa gtgcctacac 481 cgaaaaccgt agccagaaaa ggctagttat cctatctttt agacaggtag aagattgtgg 541 gagatgggcg cgagaaactc cgtcttgaga gggaaaaaag cagatgaatt agaaaagatt 601 aggttacggc ccagcggaaa gaaaaagtac aggctaaaac atattgtgtg ggcagcgaac 661 gaattggaca aattcggatt ggcagagagc ctgttggagt caaaagaagg ttgccaaaag 721 attctcacag ttttagatcc attagtacca acagggtcag aaaatttaaa aagccttttt 781 aacacagtct gcgtcatttg gtgcttgcac gcagaagaga aagtgaaaga tactgaagaa 841 gcaaaaaaac tagtacagag acatctaggg gcagaaacag gaactgcaga aaaaatgcca 901 agtacaagta gaccaacagc accacctagc gggagaggaa gaaacttccc tgtacaacag 961 acaggcggtg gcaactatat ccacgtgcca ctgagccccc gaactctaaa tgcttgggta 1021 aaattagtag aggacaagaa gttcggggca gaagtagtgc caggatttca agcactctca 1081 gaaggctgca cgccctatga tatcaaccaa atgcttaatt gtgtgggcga tcaccaagca 1141 gctatgcaaa taatcagaga gattatcaat gacgaagcag cagattggga tgcacagcac 1201 ccaataccag gccccttacc agcagggcag cttagagacc caagggggtc tgacatagca 1261 ggaacaacaa gcacagtaga agaacagatc cagtggatgt ataggccaca aaatcccgtg 1321 ccggtaggga acatctacag aagatggatc cagatagggc tacagaagtg tgtcaggatg 1381 tacaacccaa ctaacatctt agacgtaaag cagggaccaa aggaaccgtt ccagagctat 1441 gtggacaggt tctataaaag cttgagggca gaacaaacag atccggcagt aaagaactgg 1501 atgacccaaa cgctgctaat acagaatgcc aacccagact gcaagttagt actaaaagga 1561 ctggggatga atcccaccct agaagagatg ctgactgcct gtcagggggt aggtggacca 1621 ggccaaaaag ccagactaat ggccgaagcc ctgaaggagg ctttgacacc accccctatc 1681 ccatttgcag cagcccaaca aagaaaggta attaggtgtt ggaactgcgg aaaggaggga 1741 cactcggcga gacagtgccg agcgcctaga agacagggct gctggaaatg tggcaagaca 1801 ggacacgtca tggcaaaatg cccagaaaga caggcaggtt ttttagggat gggtccatgg 1861 ggaaagaagc cccgcaactt ccccgtggcc caagctcctc cggggctgat accaacagca 1921 cccccagcag atccagcagt ggatctattg gaaagatata tgcagcaggg gagagagcag 1981 agggagcaga gggagagacc atacaaagag gtgacggaag acttactgca cctcgagcag 2041 ggaaaagcac ctcacagaga ggcgacagag gacttgctgc acctcaattc tctctttgga 2101 aaagaccagt agtcacagca tacatcgagg tacagccggt agaagtctta ttagacacag 2161 gggctgatga ctcaatagtg gcaggaatac agttagggga caattacgtt ccaaaaatag 2221 tggggggaat agggggattc ataaacacca aagagattaa aaatatagaa ataaaagtac 2281 taaataaaag agtaagagcc accataatga caggagatac cccaatcaac atctttggca 2341 gaaatatcct gacagcctta ggcatgtcat taaatttacc aatcgccaag atagaaccaa 2401 taaaagtaac gttgaagcca gggaaagatg gaccaagact gagacaatgg cccctaacaa 2461 aagagaaaat agaagcacta agagagatct gcgaaaaaat ggaaaaggag ggccaactag 2521 aagaggcacc tccaactaat ccttataata cccccacatt tgcaattaag aaaaaggaca 2581 agaacaaatg gaggatgcta atagacttta gagaactaaa cagggtgact caagatttca 2641 cagaaattca gctaggaatt ccacacccgg caggattagc caaaaagaaa aggatcactg 2701 tactagatgt aggggatgcc tacttttcca taccgctaca tgaagatttt aggcagtata 2761 ctgcatttac cctaccatca gtaaacaatg cagaaccagg aaaaagatat atatataagg 2821 tcttaccaca aggatggaag ggatcaccag caatttttca acacacaatg aggcaagtct 2881 tagaaccttt cagaaaagca aacccagatg tcattctcat ccaatacatg gatgatattt 2941 taatagctag tgacaggaca ggtttagagc atgacaaagt agtcctgcag ctaaaagaac 3001 ttctgaatgg cctagggttc tctaccccag atgagaagtt ccaaaaagac cctccgcttc 3061 aatggatggg ctatgaacta tggccaacta aatggaagct gcagaaatta caactgcccc 3121 agaaagaaat atggacagtc aacgacatcc agaagctggt gggagtctta aattgggcgg 3181 cacaaatcta tccaggaata aaaaccaaac atttgtgtag gctaatcaaa ggaaaaatga 3241 cactcacaga agaagtgcag tggacagagt tagcagaagc agagctagaa gaaaacaaaa 3301 ttatcttaag ccaggaacaa gaaggatact attaccaaga agaaaaagaa ttagaggcaa 3361 caatccaaaa aaatcaagac aatcagtgga catacaaaat acaccaggaa gagaaaatcc 3421 taaaagtagg gaaatatgca aagataaaaa atacccatac caatggggtc agattactag 3481 cacaggtagt tcagaaaata ggaaaagaag cactagtcat ctggggacgg ataccaaaat 3541 tccacttacc ggtggagaga gagacctggg agcagtggtg ggataactac tggcaagtga 3601 catggatccc agagtgggac ttcgtatcta ccccaccact agtcaggtta acatttaacc 3661 tagtaggaga tcctatacca ggcgcagaga ccttctacac agatggatca tgcaatagac 3721 agtcaaagga aggaaaagca cgatatgtga cagatagagg aagagacaag gtaagagtac 3781 tagaacgaac taccaatcag caagcagaat tagaagcctt tgcgatgaca ctgacagact 3841 cgggtccaaa agttaatatc atagtagact cacagtatgt aatgggaata gtagtaggcc 3901 aaccaacaga gtcagaaagt agaatagtaa accaaatcat tgaggacatg ataaagaaag 3961 aagcagtcta tgtcgcgtgg gtcccagccc ataaaggcat aggaggaaac caggaagtag 4021 accatttagt aagtcagggc atcagacaag tattgttcct agaaaggata gagcccgccc 4081 aagaagaaca tgaaaaatat catagcaata tgaaagaact aacccataaa tttggaatac 4141 cccaactagt agcaagacag atagtaaaca catgtgccca atgccaacag aaaggagagg 4201 ccatacatgg gcaggtaaat gcagaaatag gtgtctggca aatggactgc acacacttag 4261 aaggaaagat cattatagta gcagtacatg ttgcaagtgg attcatagaa gcagaagtta 4321 tcccacagga atcaggaagg cagacagcgc tcttcctatt aaaactggcc agtaggtggc 4381 caataacaca cttacacaca gacaatggct ccaacttcac ttcacaggaa gtgaagatgg 4441 tggcatggtg gataggtata gagcaatcct ttggagtacc ttacaaccca caaagccagg 4501 gagtagtaga agcaatgaat caccacttaa agaatcagat aagtagaatt agagaacagg 4561 caaatacaat agaaaccata gtactaatgg cagttcattg catgaatttt aaaagaaggg 4621 gaggaatagg ggatatgacc ccagcagaaa gactaatcaa catgattacc acagaacaag 4681 aaatacaatt cctccaaaga aaaaattcaa attttaaaaa cttccaggtc tattacagag 4741 aaggcagaga tcagctgtgg aaaggacctg gagaactact gtggaaggga gacggagcag 4801 tcatagtcaa ggtaggggca gacataaaag taataccaag aaggaaggcc aagattatca 4861 gagactatgg aggaaggcaa gaactggata gttcccacct ggagggtgcc agggaggagg 4921 atggagaggt ggcatagtct tgtcaagtac ctaaaataca gaacaagaga cctagaggag 4981 gtgcgctatg ttccccacca caaggtggga tgggcgtggt ggacttgcag cagggtaata 5041 ttccctctaa aaggagaaag tcatctagag atacaggcat attggaacct aacgccagaa 5101 aaaggatggc tctcctctca ttcagtgaga ataacctggt atacagaaag gttctggaca 5161 gatgttaccc cagactatgc agacatccta atacatagca cttatttctc ttgctttacg 5221 gcaggtgaag taagaagagc catcagaggg gaaaagttat tgtcctgctg caactatccc 5281 caagctcata aagtacaggt accatcactt caatacctag ccctagtggt agtgcaacaa 5341 aatgacagac cccagagaaa gggtaccgcc aggaaacagt ggagaagaga ccattggaga 5401 ggccttcgag tggctagaca ggactataga agccttaaac agagaggcag tgaaccatct 5461 gccccgagag ctcattttcc aggtgtggca aaggtcctgg agatactggc atgatgacca 5521 agggatgtca ccaagctaca caaagtatag atatttgtgc ctgatgcaga aagctgtatt 5581 tatacatttc aagagagggt gcacttgcct ggggggagga catggaccgg gaggatggag 5641 atcaggacct ccccctcctc cccctccagg tctagtctaa tgactgaagc accaacagag 5701 tttcccccag aagatgggac cccacggagg gaactagggg gtgactgggt aataagaatt 5761 ctgggagaaa taaaggaaga agccttaaag cattttgatc cccgcttgct aatcgctctt 5821 ggcaactata tccatagtag acatggagac acacctgaag gcgccagaga gctcattaga 5881 atcctacaac gagccctctt cgtgcacctc agagcagggt gtaaccgctc aagaattagc 5941 caaacaagga gaagaactcc tttcccagct gcaccgaccc ctagaggcat gtactaactc 6001 atgctattgt aagcagtgca gcttccattg ccagctgtgt ttcttgaaaa aagggctcgg 6061 gatatggtat gcacgaaaaa gcagacggag aagaactcca agaaagacta agactcattc 6121 gtcttctgca tcagacaagt gagtaagatg tgtggtaaga gtctactatg tgttgccagc 6181 ttgctagcta gtgcttactt agtatattgc acccaatatg tgactgtttt ctatggcgtg 6241 cccgtgtgga gaaatgcatc cattcccctc ttttgtgcaa ctaaaaacag agatacttgg 6301 ggaaccatac agtgcaagcc agacaatgat gattatcaag aaataacctt gaatgtgaca 6361 gaggctttcg acgcatggga taatacagta acagaacaag cagtagaaga tgtctggagt 6421 ctatttgaga catcaataaa accatgcgtc aaactaacac ctctatgtgt agcaatgagt 6481 tgtaacagca ccactaacaa cacaaccaca acagggagca caacagggat gtcagagata 6541 aatgaaactt ctccatcata ctcagacaac tgcacaggat tggggaagga agagatagtc 6601 aattgtcagt tctatatgac aggattagag agagataaga aaaaacagta taatgaaaca 6661 tggtactcaa aagatgtagt ttgtgaatca aataatacca aagatgggaa aaacagatgt 6721 tacatgaacc attgcaacac atcagtcatc acagagtcat gtgataagca ctattgggat 6781 gctataaagt ttagatactg tgcaccaccg ggttatgccc tactaagatg caatgatacc 6841 aattattcag gcttcgagcc aaagtgttct aaagtagtag cttctacatg cacaaggatg 6901 atggaaacgc aaacctccac ttggtttggc tttaatggca ctagggcaga gaatagaaca 6961 tatatctatt ggcatggcag agataatagg actatcatca gcttaaacaa gtattataac 7021 ctttctatac attgtaagag accaggaaac aagacagttg taccaataac actcatgtca 7081 gggttagtgt ttcactccca gccaatcaat acaagaccta ggcaagcatg gtgctggttc 7141 aaaggcaagt ggagggaagc catgcaggag gtaaagcaaa cccttataaa acatcccagg 7201 tataaaggaa ccaacgacac aaagaatatt aactttacaa aaccaggaag aggctcagac 7261 ccagaagtgg catacatgtg gactaactgc agaggagaat ttctctactg caacatgact 7321 tggttcctca attgggtaga aaacagaccg aatcagacac agcacaatta tgcgccgtgc 7381 catataaggc aaataattaa tacctggcac aaggtaggga aaaatgtata tttgcctcct 7441 agagaaggac agttgacctg caactcaaca gtgaccagca taattgctaa cattgacgta 7501 aatagtaacc agacaaatat tacctttagt gcagaggtgg cagaactata ccgattagaa 7561 ttgggagatt ataaattaat agaagtaaca ccaattggct tcgcacctac gagagagaaa 7621 agatattcct cggctccagt gaggaacaaa agaggtgtgt ttgtgctagg gttcttgggt 7681 tttctcgcga cagcaggttc tgcaatgggc gcggcgtccc tgacgctgtc ggctcagtcc 7741 cggactttac tggccgggat agtgcagcaa cagcaacagc tgttggacgt agtcaagaga 7801 caacaagaaa tgttgcgact gaccgtctgg ggaacgaaaa atctccaggc aagagtcact 7861 gctatcgaga agtacttaaa ggaccaggca cagttaaatt catgggggtg tgcgtttagg 7921 caggtctgcc acactactgt accatgggta aatgattctt tatcgcctga ctggaacaat 7981 atgacatggc aggaatggga aaaacaagtc cgctacctag aggcaaatat cagtcaaagt 8041 ttagaacagg cacaaattca acaagaaaag aatatgtatg aattacaaaa gctaaatagc 8101 tgggatgtct ttggcaactg gtttgattta acctcctgga tcaagtatat tcaatatgga 8161 gtttatatag tagtaggagt gatagtttta agaatagcaa tatatatagt gcaattgtta 8221 agtagactta gaaagggcta taggcctgtt ttctcttccc ctcccggtta tctccaacag 8281 atccatatcc acacggaccg gggacagcca gccaacgaag gaacagaaga agacgacaga 8341 gacgacgatg gttacgactt gtagccttgg ccgataaact atatacattt cctgatccac 8401 ctactgactc gcctcttgac cgggctatac aagatctgca gagacttact atccacgaac 8461 tccccgaccc accgactgat ctcccagaat ctaacagcaa tcagggactg gctgagactt 8521 aaagcggcct acctgcaata tgggggcgag tggatccaag aagcattcca agcattcgca 8581 aagactacga gagagactct tgcgagcgca tggggggggt tatgtgcagc agtgcaacgc 8641 gtcgggaggg gaatactcgc agtcccaaga aggatcaggc aaggggcaga aatcgccctc 8701 ctgtgaggga cagcagtatc ggcagggaga tttcatgaac accccatgga gaaccccggc 8761 aatagaagga cagaaaaagt tatacaagca gcaaaatatg gatgatatag attctagtga 8821 tgatgaccta gtgggagttc ctgttacacc aagagtacca ctaagagcaa tgacctataa 8881 attggcagta gatatgtcac attttataaa gaaaagggga ctggatggga tgttttacag 8941 tagggataga catagaatcc tagacttgta cctagaaaag gaggaaggga taataccaga 9001 ttggcagaat tatactcatg ggccaggagt aaggtaccca atgtgtttcg ggtggctatg 9061 gaagctagta ccagtagatg tctcacaaga ggcagaggac gatgagacca actacttaac 9121 acacccagca caaacaagca gacatgatga cgagcatgga gaaacactac tttggcggtt 9181 tgaccccacg ctggcctatg attacaaggc tttcattctg catccagaag agtttgggca 9241 caagtcagga ttgccagaga aagagtggaa ggcaaaactg aaagcaagag ggataccata 9301 tagttaacaa caggaacagc catacttggt caaggcagga agtagctact gagaacagct 9361 gaggctgcag ctgcagggac tttccagaag gggctgtaac caagggaggg acatgggagg 9421 agctggtggg gaacgccctc atacttactg tataaatgta ctcgcttctt acattgtatt //