GenBank-Updates@genbank.bio.net (02/02/91)
LOCUS HIV2GH1 9480 bp ds-DNA VRL 02-FEB-1991
DEFINITION Human immunodeficiency virus type 2 proviral DNA, gag, pol, vif,
vpX, vpR, tat, rev, env and nef genes.
ACCESSION M30895 D00477
KEYWORDS .
SOURCE Human immunodeficiency virus type 2 MOLT-4 cell (isolate GH1)
proviral DNA, clone 8.
ORGANISM Human immunodeficiency virus type 2
Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
Retroviridae; Lentivirinae.
REFERENCE 1 (bases 1 to 9480)
AUTHORS Hasegawa,A., Tsujimoto,H., Maki,N., Ishikawa,K.-., Miura,T.,
Fukasawa,M., Miki,K. and Hayami,M.
TITLE Genomic divergence of HIV-2 from Ghana
JOURNAL AIDS Res. Hum. Retroviruses 5, 593-604 (1989)
STANDARD full staff_review
COMMENT GH1 was isolated from a Ghanian AIDS patient; virus was cloned in
MOLT-4 clone 8 cells.
FEATURES Location/Qualifiers
CDS <1770..4937
/note="pol polyprotein"
CDS join(5843..6138,8281..8377)
/note="tat protein"
CDS join(6069..6138,8281..8522)
/note="rev protein"
CDS 544..2112
/note="gag polyprotein"
CDS 4867..5514
/note="vif protein"
CDS 5342..5680
/note="vpX protein"
CDS 5680..5997
/note="vpR protein"
exon 5843..6138
/note="tat protein, exon 2 (first expressed exon)"
exon 6069..6138
/note="rev protein, exon 2 (first expressed exon)"
CDS 6148..8364
/note="env polyprotein (see COMMENT)"
exon 8281..8377
/note="tat protein, exon 3 (AA at 8282)"
exon 8281..8522
/note="rev protein, exon 3 (AA at 8283)"
CDS 8540..9307
/note="nef protein"
BASE COUNT 3257 a 1957 c 2349 g 1917 t
ORIGIN
1 cagtcgctct ggcagaggct ggcagattga gccctgggag gttctctcca gcactagcag
61 gtagagcctg ggtgttccct gctagactct caccagtgct tggccggcac tgggcagacg
121 gctccacgct tgcttgctta aagacctctt aataaagctg ccaattagaa gcaagttaag
181 tgtgtgttcc catctctcct agtcgccgcc tggtcattcg gtgttcatct gaataacaag
241 accctggtct gttaggaccc ttccgctttg ggaatccaag gcaggaaaat ccctagcagg
301 ttggcgccca acagggactt gaaagggact gagaagccct ggaacacggc tagtgaaggt
361 agtaaggcgg caggaacaaa ccacgacgga gtgctcctag aaaagcgcgg gccgaggtac
421 caaaggcggc gtgtggagcg ggagtgaaag aggcctccgg gtgaaggtaa gtgcctacac
481 cgaaaaccgt agccagaaaa ggctagttat cctatctttt agacaggtag aagattgtgg
541 gagatgggcg cgagaaactc cgtcttgaga gggaaaaaag cagatgaatt agaaaagatt
601 aggttacggc ccagcggaaa gaaaaagtac aggctaaaac atattgtgtg ggcagcgaac
661 gaattggaca aattcggatt ggcagagagc ctgttggagt caaaagaagg ttgccaaaag
721 attctcacag ttttagatcc attagtacca acagggtcag aaaatttaaa aagccttttt
781 aacacagtct gcgtcatttg gtgcttgcac gcagaagaga aagtgaaaga tactgaagaa
841 gcaaaaaaac tagtacagag acatctaggg gcagaaacag gaactgcaga aaaaatgcca
901 agtacaagta gaccaacagc accacctagc gggagaggaa gaaacttccc tgtacaacag
961 acaggcggtg gcaactatat ccacgtgcca ctgagccccc gaactctaaa tgcttgggta
1021 aaattagtag aggacaagaa gttcggggca gaagtagtgc caggatttca agcactctca
1081 gaaggctgca cgccctatga tatcaaccaa atgcttaatt gtgtgggcga tcaccaagca
1141 gctatgcaaa taatcagaga gattatcaat gacgaagcag cagattggga tgcacagcac
1201 ccaataccag gccccttacc agcagggcag cttagagacc caagggggtc tgacatagca
1261 ggaacaacaa gcacagtaga agaacagatc cagtggatgt ataggccaca aaatcccgtg
1321 ccggtaggga acatctacag aagatggatc cagatagggc tacagaagtg tgtcaggatg
1381 tacaacccaa ctaacatctt agacgtaaag cagggaccaa aggaaccgtt ccagagctat
1441 gtggacaggt tctataaaag cttgagggca gaacaaacag atccggcagt aaagaactgg
1501 atgacccaaa cgctgctaat acagaatgcc aacccagact gcaagttagt actaaaagga
1561 ctggggatga atcccaccct agaagagatg ctgactgcct gtcagggggt aggtggacca
1621 ggccaaaaag ccagactaat ggccgaagcc ctgaaggagg ctttgacacc accccctatc
1681 ccatttgcag cagcccaaca aagaaaggta attaggtgtt ggaactgcgg aaaggaggga
1741 cactcggcga gacagtgccg agcgcctaga agacagggct gctggaaatg tggcaagaca
1801 ggacacgtca tggcaaaatg cccagaaaga caggcaggtt ttttagggat gggtccatgg
1861 ggaaagaagc cccgcaactt ccccgtggcc caagctcctc cggggctgat accaacagca
1921 cccccagcag atccagcagt ggatctattg gaaagatata tgcagcaggg gagagagcag
1981 agggagcaga gggagagacc atacaaagag gtgacggaag acttactgca cctcgagcag
2041 ggaaaagcac ctcacagaga ggcgacagag gacttgctgc acctcaattc tctctttgga
2101 aaagaccagt agtcacagca tacatcgagg tacagccggt agaagtctta ttagacacag
2161 gggctgatga ctcaatagtg gcaggaatac agttagggga caattacgtt ccaaaaatag
2221 tggggggaat agggggattc ataaacacca aagagattaa aaatatagaa ataaaagtac
2281 taaataaaag agtaagagcc accataatga caggagatac cccaatcaac atctttggca
2341 gaaatatcct gacagcctta ggcatgtcat taaatttacc aatcgccaag atagaaccaa
2401 taaaagtaac gttgaagcca gggaaagatg gaccaagact gagacaatgg cccctaacaa
2461 aagagaaaat agaagcacta agagagatct gcgaaaaaat ggaaaaggag ggccaactag
2521 aagaggcacc tccaactaat ccttataata cccccacatt tgcaattaag aaaaaggaca
2581 agaacaaatg gaggatgcta atagacttta gagaactaaa cagggtgact caagatttca
2641 cagaaattca gctaggaatt ccacacccgg caggattagc caaaaagaaa aggatcactg
2701 tactagatgt aggggatgcc tacttttcca taccgctaca tgaagatttt aggcagtata
2761 ctgcatttac cctaccatca gtaaacaatg cagaaccagg aaaaagatat atatataagg
2821 tcttaccaca aggatggaag ggatcaccag caatttttca acacacaatg aggcaagtct
2881 tagaaccttt cagaaaagca aacccagatg tcattctcat ccaatacatg gatgatattt
2941 taatagctag tgacaggaca ggtttagagc atgacaaagt agtcctgcag ctaaaagaac
3001 ttctgaatgg cctagggttc tctaccccag atgagaagtt ccaaaaagac cctccgcttc
3061 aatggatggg ctatgaacta tggccaacta aatggaagct gcagaaatta caactgcccc
3121 agaaagaaat atggacagtc aacgacatcc agaagctggt gggagtctta aattgggcgg
3181 cacaaatcta tccaggaata aaaaccaaac atttgtgtag gctaatcaaa ggaaaaatga
3241 cactcacaga agaagtgcag tggacagagt tagcagaagc agagctagaa gaaaacaaaa
3301 ttatcttaag ccaggaacaa gaaggatact attaccaaga agaaaaagaa ttagaggcaa
3361 caatccaaaa aaatcaagac aatcagtgga catacaaaat acaccaggaa gagaaaatcc
3421 taaaagtagg gaaatatgca aagataaaaa atacccatac caatggggtc agattactag
3481 cacaggtagt tcagaaaata ggaaaagaag cactagtcat ctggggacgg ataccaaaat
3541 tccacttacc ggtggagaga gagacctggg agcagtggtg ggataactac tggcaagtga
3601 catggatccc agagtgggac ttcgtatcta ccccaccact agtcaggtta acatttaacc
3661 tagtaggaga tcctatacca ggcgcagaga ccttctacac agatggatca tgcaatagac
3721 agtcaaagga aggaaaagca cgatatgtga cagatagagg aagagacaag gtaagagtac
3781 tagaacgaac taccaatcag caagcagaat tagaagcctt tgcgatgaca ctgacagact
3841 cgggtccaaa agttaatatc atagtagact cacagtatgt aatgggaata gtagtaggcc
3901 aaccaacaga gtcagaaagt agaatagtaa accaaatcat tgaggacatg ataaagaaag
3961 aagcagtcta tgtcgcgtgg gtcccagccc ataaaggcat aggaggaaac caggaagtag
4021 accatttagt aagtcagggc atcagacaag tattgttcct agaaaggata gagcccgccc
4081 aagaagaaca tgaaaaatat catagcaata tgaaagaact aacccataaa tttggaatac
4141 cccaactagt agcaagacag atagtaaaca catgtgccca atgccaacag aaaggagagg
4201 ccatacatgg gcaggtaaat gcagaaatag gtgtctggca aatggactgc acacacttag
4261 aaggaaagat cattatagta gcagtacatg ttgcaagtgg attcatagaa gcagaagtta
4321 tcccacagga atcaggaagg cagacagcgc tcttcctatt aaaactggcc agtaggtggc
4381 caataacaca cttacacaca gacaatggct ccaacttcac ttcacaggaa gtgaagatgg
4441 tggcatggtg gataggtata gagcaatcct ttggagtacc ttacaaccca caaagccagg
4501 gagtagtaga agcaatgaat caccacttaa agaatcagat aagtagaatt agagaacagg
4561 caaatacaat agaaaccata gtactaatgg cagttcattg catgaatttt aaaagaaggg
4621 gaggaatagg ggatatgacc ccagcagaaa gactaatcaa catgattacc acagaacaag
4681 aaatacaatt cctccaaaga aaaaattcaa attttaaaaa cttccaggtc tattacagag
4741 aaggcagaga tcagctgtgg aaaggacctg gagaactact gtggaaggga gacggagcag
4801 tcatagtcaa ggtaggggca gacataaaag taataccaag aaggaaggcc aagattatca
4861 gagactatgg aggaaggcaa gaactggata gttcccacct ggagggtgcc agggaggagg
4921 atggagaggt ggcatagtct tgtcaagtac ctaaaataca gaacaagaga cctagaggag
4981 gtgcgctatg ttccccacca caaggtggga tgggcgtggt ggacttgcag cagggtaata
5041 ttccctctaa aaggagaaag tcatctagag atacaggcat attggaacct aacgccagaa
5101 aaaggatggc tctcctctca ttcagtgaga ataacctggt atacagaaag gttctggaca
5161 gatgttaccc cagactatgc agacatccta atacatagca cttatttctc ttgctttacg
5221 gcaggtgaag taagaagagc catcagaggg gaaaagttat tgtcctgctg caactatccc
5281 caagctcata aagtacaggt accatcactt caatacctag ccctagtggt agtgcaacaa
5341 aatgacagac cccagagaaa gggtaccgcc aggaaacagt ggagaagaga ccattggaga
5401 ggccttcgag tggctagaca ggactataga agccttaaac agagaggcag tgaaccatct
5461 gccccgagag ctcattttcc aggtgtggca aaggtcctgg agatactggc atgatgacca
5521 agggatgtca ccaagctaca caaagtatag atatttgtgc ctgatgcaga aagctgtatt
5581 tatacatttc aagagagggt gcacttgcct ggggggagga catggaccgg gaggatggag
5641 atcaggacct ccccctcctc cccctccagg tctagtctaa tgactgaagc accaacagag
5701 tttcccccag aagatgggac cccacggagg gaactagggg gtgactgggt aataagaatt
5761 ctgggagaaa taaaggaaga agccttaaag cattttgatc cccgcttgct aatcgctctt
5821 ggcaactata tccatagtag acatggagac acacctgaag gcgccagaga gctcattaga
5881 atcctacaac gagccctctt cgtgcacctc agagcagggt gtaaccgctc aagaattagc
5941 caaacaagga gaagaactcc tttcccagct gcaccgaccc ctagaggcat gtactaactc
6001 atgctattgt aagcagtgca gcttccattg ccagctgtgt ttcttgaaaa aagggctcgg
6061 gatatggtat gcacgaaaaa gcagacggag aagaactcca agaaagacta agactcattc
6121 gtcttctgca tcagacaagt gagtaagatg tgtggtaaga gtctactatg tgttgccagc
6181 ttgctagcta gtgcttactt agtatattgc acccaatatg tgactgtttt ctatggcgtg
6241 cccgtgtgga gaaatgcatc cattcccctc ttttgtgcaa ctaaaaacag agatacttgg
6301 ggaaccatac agtgcaagcc agacaatgat gattatcaag aaataacctt gaatgtgaca
6361 gaggctttcg acgcatggga taatacagta acagaacaag cagtagaaga tgtctggagt
6421 ctatttgaga catcaataaa accatgcgtc aaactaacac ctctatgtgt agcaatgagt
6481 tgtaacagca ccactaacaa cacaaccaca acagggagca caacagggat gtcagagata
6541 aatgaaactt ctccatcata ctcagacaac tgcacaggat tggggaagga agagatagtc
6601 aattgtcagt tctatatgac aggattagag agagataaga aaaaacagta taatgaaaca
6661 tggtactcaa aagatgtagt ttgtgaatca aataatacca aagatgggaa aaacagatgt
6721 tacatgaacc attgcaacac atcagtcatc acagagtcat gtgataagca ctattgggat
6781 gctataaagt ttagatactg tgcaccaccg ggttatgccc tactaagatg caatgatacc
6841 aattattcag gcttcgagcc aaagtgttct aaagtagtag cttctacatg cacaaggatg
6901 atggaaacgc aaacctccac ttggtttggc tttaatggca ctagggcaga gaatagaaca
6961 tatatctatt ggcatggcag agataatagg actatcatca gcttaaacaa gtattataac
7021 ctttctatac attgtaagag accaggaaac aagacagttg taccaataac actcatgtca
7081 gggttagtgt ttcactccca gccaatcaat acaagaccta ggcaagcatg gtgctggttc
7141 aaaggcaagt ggagggaagc catgcaggag gtaaagcaaa cccttataaa acatcccagg
7201 tataaaggaa ccaacgacac aaagaatatt aactttacaa aaccaggaag aggctcagac
7261 ccagaagtgg catacatgtg gactaactgc agaggagaat ttctctactg caacatgact
7321 tggttcctca attgggtaga aaacagaccg aatcagacac agcacaatta tgcgccgtgc
7381 catataaggc aaataattaa tacctggcac aaggtaggga aaaatgtata tttgcctcct
7441 agagaaggac agttgacctg caactcaaca gtgaccagca taattgctaa cattgacgta
7501 aatagtaacc agacaaatat tacctttagt gcagaggtgg cagaactata ccgattagaa
7561 ttgggagatt ataaattaat agaagtaaca ccaattggct tcgcacctac gagagagaaa
7621 agatattcct cggctccagt gaggaacaaa agaggtgtgt ttgtgctagg gttcttgggt
7681 tttctcgcga cagcaggttc tgcaatgggc gcggcgtccc tgacgctgtc ggctcagtcc
7741 cggactttac tggccgggat agtgcagcaa cagcaacagc tgttggacgt agtcaagaga
7801 caacaagaaa tgttgcgact gaccgtctgg ggaacgaaaa atctccaggc aagagtcact
7861 gctatcgaga agtacttaaa ggaccaggca cagttaaatt catgggggtg tgcgtttagg
7921 caggtctgcc acactactgt accatgggta aatgattctt tatcgcctga ctggaacaat
7981 atgacatggc aggaatggga aaaacaagtc cgctacctag aggcaaatat cagtcaaagt
8041 ttagaacagg cacaaattca acaagaaaag aatatgtatg aattacaaaa gctaaatagc
8101 tgggatgtct ttggcaactg gtttgattta acctcctgga tcaagtatat tcaatatgga
8161 gtttatatag tagtaggagt gatagtttta agaatagcaa tatatatagt gcaattgtta
8221 agtagactta gaaagggcta taggcctgtt ttctcttccc ctcccggtta tctccaacag
8281 atccatatcc acacggaccg gggacagcca gccaacgaag gaacagaaga agacgacaga
8341 gacgacgatg gttacgactt gtagccttgg ccgataaact atatacattt cctgatccac
8401 ctactgactc gcctcttgac cgggctatac aagatctgca gagacttact atccacgaac
8461 tccccgaccc accgactgat ctcccagaat ctaacagcaa tcagggactg gctgagactt
8521 aaagcggcct acctgcaata tgggggcgag tggatccaag aagcattcca agcattcgca
8581 aagactacga gagagactct tgcgagcgca tggggggggt tatgtgcagc agtgcaacgc
8641 gtcgggaggg gaatactcgc agtcccaaga aggatcaggc aaggggcaga aatcgccctc
8701 ctgtgaggga cagcagtatc ggcagggaga tttcatgaac accccatgga gaaccccggc
8761 aatagaagga cagaaaaagt tatacaagca gcaaaatatg gatgatatag attctagtga
8821 tgatgaccta gtgggagttc ctgttacacc aagagtacca ctaagagcaa tgacctataa
8881 attggcagta gatatgtcac attttataaa gaaaagggga ctggatggga tgttttacag
8941 tagggataga catagaatcc tagacttgta cctagaaaag gaggaaggga taataccaga
9001 ttggcagaat tatactcatg ggccaggagt aaggtaccca atgtgtttcg ggtggctatg
9061 gaagctagta ccagtagatg tctcacaaga ggcagaggac gatgagacca actacttaac
9121 acacccagca caaacaagca gacatgatga cgagcatgga gaaacactac tttggcggtt
9181 tgaccccacg ctggcctatg attacaaggc tttcattctg catccagaag agtttgggca
9241 caagtcagga ttgccagaga aagagtggaa ggcaaaactg aaagcaagag ggataccata
9301 tagttaacaa caggaacagc catacttggt caaggcagga agtagctact gagaacagct
9361 gaggctgcag ctgcagggac tttccagaag gggctgtaac caagggaggg acatgggagg
9421 agctggtggg gaacgccctc atacttactg tataaatgta ctcgcttctt acattgtatt
//