GenBank-Updates@genbank.bio.net (02/05/91)
LOCUS JEVCMNAA 10969 bp ss-RNA VRL 05-FEB-1991
DEFINITION Japanese encephalitis SA-14 virus, complete genome.
ACCESSION M55506
KEYWORDS envelope protein; nonstructural protein; nucleocapsid protein.
SOURCE Japanese encephalitis virus (strain SA-14) viral RNA.
ORGANISM Japanese encephalitis virus
Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
Flaviviridae; Flavivirus (arbovirus group B).
REFERENCE 1 (bases 1 to 10969)
AUTHORS Nitayaphan,S., Grant,J.A., Chang,G.-J.J. and Trent,D.W.
TITLE Nucleotide sequence of the virulent SA-14 stain of Japanese
encephalitis virus and its attenuated vaccine derivative,
SA-14-14-2
JOURNAL Virology 177, 541-552 (1990)
STANDARD simple staff_entry
FEATURES Location/Qualifiers
CDS 96..10394
/note="nucleocapsid protein"
/gene="C"
/codon_start=96
CDS 477..10394
/note="nonglycosylated envelope protein"
/gene="M"
/codon_start=477
CDS 978..10394
/note="envelope protein"
/gene="E"
/codon_start=978
/partial
CDS 2478..10394
/note="nonstructural protein"
/gene="NS1"
/codon_start=2478
/partial
CDS 3723..10394
/note="nonstructural protein"
/gene="NS2A"
/codon_start=3723
/partial
CDS 4215..10394
/note="nonstructural protein"
/gene="NS2B"
/codon_start=4215
/partial
CDS 4608..10394
/note="nonstructural protein"
/gene="NS3"
/codon_start=4608
/partial
CDS 6465..10394
/note="nonstructural protein"
/gene="ns4a"
/codon_start=6465
/partial
CDS 7266..10394
/note="nonstructural protein"
/gene="NS4B"
/codon_start=7266
/partial
CDS 7677..10394
/note="nonstructural protein"
/gene="NS5"
/codon_start=7677
/partial
BASE COUNT 3038 a 2524 c 3112 g 2295 t
ORIGIN
1 agaagtttat ctgtgtgaac ttcttggctt agtatcgttg agaagaatcg agagattagt
61 gcagtttaaa cagtttttta gaacggaaga taaccatgac taaaaaacca ggagggcccg
121 gtaaaaaccg ggctatcaat atgctgaaac gcggcctacc ccgcgtattc ccactagtgg
181 gagtgaagag ggtagtaatg agcttgttgg acggcagagg gccagtacgt ttcgtgctgg
241 ctcttatcac gttcttcaag tttacagcat tagccccgac caaggcgctt ttaggccgat
301 ggaaagcagt ggaaaagagt gtggcaatga aacatcttac tagtttcaaa cgagaacttg
361 gaacactcat tgacgccgtg aacaagcggg gcagaaagca aaacaaaaga ggaggaaatg
421 aaggctcaat catgtggctc gcgagcttgg cagttgtcat agcttgtgca ggagccatga
481 agttgtcgaa tttccagggg aagcttttga tgaccatcaa caacacggac attgcagacg
541 ttatcgtgat tcccacctca aaaggagaga acagatgctg ggtccgggca atcgacgtcg
601 gctacatgtg tgaggacact atcacgtacg aatgtcctaa gcttaccatg ggcaatgatc
661 cagaggatgt ggattgctgg tgtgacaacc aagaagtcta cgtccaatat ggacggtgca
721 cgcggaccag gcattccaag cgaagcagga gatccgtgtc ggtccaaaca catggggaga
781 gttcactagt gaataaaaaa gaggcttggc tggattcaac gaaagccaca cgatatctca
841 tgaaaactga gaactggatc ataaggaatc ctggctatgc tttcctggcg gcggtacttg
901 gctggatgct tggcagtaac aacggtcaac gcgtggtatt taccatcctc ctgctgttgg
961 tcgctccggc ttacagtttt aattgtctgg gaatgggcaa tcgtgacttc atagaaggag
1021 ccagtggagc cacttgggtg gacttggtgc tagaaggaga tagctgcttg acaatcatgg
1081 caaacgacaa accaacattg gacgtccgca tgattaacat cgaagctagc caacttgctg
1141 aggtcagaag ttactgctat catgcttcag tcactgacat ctcgacggtg gctcggtgcc
1201 ccacgactgg agaagcccac aacgagaagc gagctgatag tagctatgtg tgcaaacaag
1261 gcttcactga ccgtgggtgg ggcaacggat gtggactttt cgggaaggga agcattgaca
1321 catgtgcaaa attctcctgc accagtaaag cgattgggag aacaatccag ccagaaaaca
1381 tcaaatacga agttggcatt tttgtgcatg gaaccaccac ttcggaaaac catgggaatt
1441 attcagcgca agttggggcg tcccaggcgg caaagtttac agtaacaccc aatgctcctt
1501 cgataaccct caaacttggt gactacggag aagtcacact ggactgtgag ccaaggagtg
1561 gactgaacac tgaagcgttt tacgtcatga ccgtggggtc aaagtcattt ctggtccata
1621 gggagtggtt tcatgacctc gctctcccct ggacgtcccc ttcgagcaca gcgtggagaa
1681 acagagaact cctcatggaa tttgaagggg cgcacgccac aaaacagtcc gttgttgctc
1741 ttgggtcaca ggaaggaggc ctccatcagg cgttggcagg agccatcgtg gtggagtact
1801 caagctcagt gaagttaaca tcaggccacc tgaaatgtag gctgaaaatg gacaaactgg
1861 ctctgaaagg cacaacctat ggcatgtgta cagaaaaatt ctcgttcgcg aaaaatccgg
1921 tggacactgg tcacggaaca gttgtcattg aactctccta ctctgggagt gatggcccct
1981 gcaaaattcc gattgtttcc gttgcgagcc tcaatgacat gacccccgtt gggcggctgg
2041 tgacagtgaa ccccttcgtc gcgacttcca gtgccaactc aaaggtgctg gtcgagatgg
2101 aacccccctt cggagactcc tacatcgtag ttggaagggg agacaagcag atcaaccacc
2161 attggcacaa agctggaagc acgctgggca aggccttttc aacaactttg aagggagctc
2221 aaagactggc agcgttgggc gacacagcct gggactttgg ctctattgga ggggtcttca
2281 actccatagg aagagccgtt caccaagtgt ttggtggtgc cttcagaaca ctctttgggg
2341 gaatgtcttg gatcacacaa gggctaatgg gtgccctact gctctggatg ggcgtcaacg
2401 cacgagaccg atcaattgct ttggccttct tagccacagg aggtgtgctc gtgttcttag
2461 cgaccaatgt gcatgctgac actggatgtg ccattgacat cacaagaaaa gagatgagat
2521 gtggaagtgg catcttcgtg cacaacgacg tggaagcctg ggtggatagg tataaatatt
2581 tgccagaaac gcccagatcc ctagcgaaga tcgtccacaa agcgcacaag gaaggcgtgt
2641 gcggagtcag atctgtcact agactggagc accaaatgtg ggaagccgta agggacgaat
2701 tgaacgtcct gctcaaagag aatgcagtgg acctcagtgt ggttgtgaac aagcccgtgg
2761 gaagatatcg ctcagcccct aaacgcctat ccatgacgca agagaagttt gaaatgggct
2821 ggaaagcatg gggaaaaagc atcctctttg ccccggaatt ggctaactcc acatttgtcg
2881 tagatggacc tgagacaaag gaatgccctg atgagcacag agcttggaac agcatgcaaa
2941 tcgaagactt cggctttggc atcacatcaa cccgtgtgtg gctgaaaatt agagaggaga
3001 gcactgacga gtgtgatgga gcgatcatag gcacggctgt caaaggacat gtggcagtcc
3061 atagtgactt gtcgtactgg attgagagtc gctacaacga cacatggaaa cttgagaggg
3121 cagtctttgg agaggtcaaa tcttgcactt ggccagagac acacaccctt tggggagatg
3181 atgttgagga aagtgaactc atcattccgc acaccatagc cggaccaaaa agcaagcaca
3241 atcggaggga agggtataag acacaaaacc agggaccttg ggatgagaat ggcatagtct
3301 tggactttga ttattgccca gggacaaaag tcaccattac agaggattgt agcaagagag
3361 gcccttcggt cagaaccact actgacagtg gaaagttgat cactgactgg tgctgtcgca
3421 gttgctccct tccgccccta cgattccgga cagaaaatgg ctgctggtac ggaatggaaa
3481 tcagacctgt tatgcatgat gaaacaacac tcgtcagatc acaggttgat gctttcaaag
3541 gtgaaatggt tgaccctttt cagctgggcc ttctggtgat gtttctggcc acccaggaag
3601 tccttcgcaa gaggtggacg gccagattga ccattcctgc ggttttgggg gtcctacttg
3661 tgctgatgct tgggggtatc acttacactg atttggcgag gtatgtggtg ctagtcgctg
3721 ctgctttcgc agaggccaac agtggaggag acgtcctgca ccttgctttg attgccgttt
3781 ttaagatcca accagcattt ctagtgatga acatgcttag cacgagatgg acgaaccaag
3841 aaaacgtgat tctggtccta ggggctgcct ttttccaatt ggcctcagta gatctgcaaa
3901 taggagtcca cggaatcctg aatgccgccg ctatagcatg gatgattgtc cgagcgatca
3961 ccttccccac aacctcctcc gtcaccatgc cagtcttagc gcttctaact ccggggatga
4021 gggctctata cctagacact tacagaatca tcctcctcgt catagggatt tgctccctgc
4081 tgcacgagag gaaaaagacc atggcaaaaa agaaaggagc tgtactcttg ggcttagcgc
4141 tcacatccac tggatggttc tcgcccacca ctatagctgc cggactaatg gtctgcaacc
4201 caaacaagaa gagagggtgg ccagctactg agtttttgtc ggcagttgga ttgatgtttg
4261 ccatcgtagg tggtttggcc gagttggata ttgaatccat gtcaataccc ttcatgctgg
4321 caggtctcat ggcagtgtcc tacgtggtgt caggaaaagc aacagatatg tggcttgaac
4381 gggccgccga catcagctgg gagatggatg ctgcaatcac aggaagcagt cggaggctgg
4441 atgtgaaact ggatgatgac ggagattttc acttgattga tgatcccggt gttccatgga
4501 aggtctgggt cctgcgcatg tcttgcattg gcttagccgc cctcacgcct tgggccatcg
4561 ttcccgccgc tttcggttat tggctcactt taaaaacaac aaaaagaggg ggcgtgtttt
4621 gggacacgcc atccccaaaa ccttgctcaa aaggagacac cactacagga gtctaccgaa
4681 ttatggctag agggattctt ggcacttacc aggccggcgt cggagtcatg tacgagaatg
4741 ttttccacac actatggcac acaactagag gagcagccat tatgagtgga gaaggaaaat
4801 tgacgccata ctggggtagt gtgagagaag accgcatagc ttacggaggc ccatggaggt
4861 ttgaccgaaa atggaatgga acagatgacg tgcaagtgat cgtggtagaa ccggggaagg
4921 ctgcagtaaa catccagaca aaaccaggag tgtttcggac tcccttcggg gaggttgggg
4981 ctgttagtct ggattacccg cgaggaacat ccggctcacc cattctggat tccaatggag
5041 acattatagg cctatacggc aatggagttg agcttggcga tggctcatac gtcagcgcca
5101 tcgtgcaggg tgaccgtcag gaggaaccag tcccagaagc ttacacccca aacatgttga
5161 gaaagagaca gatgactgtg ctagatttgc accctggttc agggaaaacc aggaaaattc
5221 tgccacaaat aattaaggac gctatccagc agcgcctaag aacagctgtg ttggcaccga
5281 cgcgggtggt agcagcagaa atggcagaag ctttgagagg gctcccagta cgatatcaaa
5341 cttcagcagt gcagagagag caccaaggga atgaaatagt ggatgtgatg tgccacgcca
5401 ctctgaccca tagactgatg tcaccgaaca gagtgcccaa ctacaaccta tttgtcatgg
5461 atgaagctca tttcaccgac ccagccagta tagccgcacg aggatacatt gctaccaagg
5521 tggaattagg ggaggcagca gccatcttta tgacagcgac cccgcctgga accacggatc
5581 cttttcctga ctcaaatgcc ccaatccatg atttgcaaga tgagatacca gacagggcat
5641 ggagcagtgg atacgaatgg atcacagaat atgcgggtaa aaccgtgtgg tttgtggcga
5701 gcgtaaaaat ggggaatgag attgcaatgt gcctccaaag agcggggaaa aaggtcatcc
5761 aactcaaccg caagtcctat gacacagaat acccaaaatg taagaatgga gactgggatt
5821 ttgtcattac caccgacatc tctgaaatgg gggccaactt cggtgcgagc agggtcatcg
5881 actgtagaaa gagcgtgaaa cccaccatct tagaagaggg agaaggcaga gtcatcctcg
5941 gaaacccatc tcccataacc agtgcaagcg cagctcaacg gaggggcaga gtaggcagaa
6001 accccaacca agttggagat gaataccact atgggggggc taccagtgaa gatgacagta
6061 acctagccca ttggacagag gcaaagatca tgttagacaa catacacatg cccaatggac
6121 tggtggccca gctctatgga ccagagaggg aaaaggcttt cacaatggat ggcgaatacc
6181 gtctcagagg tgaagaaaag aaaaacttct tagagctgct taggacggct gacctcccgg
6241 tgtggctggc ctacaaggtg gcgtccaatg gcattcagta caccgacaga aagtggtgtt
6301 ttgatgggcc gcgtacgaat gccatactgg aggacaacac cgaggtagag atagtcaccc
6361 ggatgggtga gaggaaaatc ctcaagccga gatggcttga tgcaagagtt tatgcagatc
6421 accaagccct caagtggttc aaagactttg cagcagggaa gagatcagcc gttagcttca
6481 tagaggtgct cggtcgcatg cctgagcatt tcatgggaaa gacgcgggaa gctttagaca
6541 ccatgtactt ggttgcaacg gctgagaaag gtgggaaagc acaccgaatg gctctcgaag
6601 agctgccaga tgcactggaa accatcacac ttattgtcgc cattactgtg atgacaggag
6661 gattcttcct actaatgatg cagcgaaagg gtatagggaa gatgggtctt ggagctctag
6721 tgctcacgct agctaccttc ttcctgtggg cggcagaggt tcctggaacc aaaatagcag
6781 ggaccctgct gatcgccctg ctgctgatgg tggttctcat cccagaaccg gaaaaacaga
6841 ggtcacagac agataaccaa ctggcggtgt ttctcatctg tgtcttgacc gtggttggag
6901 tggtggcagc aaacgagtac gggatgctag aaaaaaccaa agcagatctc aagagcatgt
6961 ttggcggaaa gacgcaggca tcaggactga ctggattgcc aagcatggca ctggacctgc
7021 gtccagccac agcctgggca ctgtatgggg ggagcacagt cgtgctaacc cctcttctga
7081 agcacctgat cacgtcggaa tacgtcacca catcgctagc ctcaattaac tcacaagctg
7141 gctcattatt cgtcttgcca cgaggcgtgc cttttaccga cctagacttg accgttggcc
7201 tcgtcttcct tggctgttgg ggtcaaatca ccctcacaac gtttctgaca gccatggttc
7261 tggcgacact tcactatggg tacatgctcc ctggatggca agcagaagca ctcagggctg
7321 cccagagaag gacagcggct ggaataatga agaatgccgt tgttgacgga atggtcgcca
7381 ctgatgtgcc tgaactggaa aggactactc ctctgatgca aaagaaagtc ggacaggtgc
7441 tcctcatagg ggtaagcgtg gcagcgttcc tcgtcaaccc taatgtcacc actgtgagag
7501 aagcaggggt gttggtgacg gcggctacgc ttactttgtg ggacaatgga gccagtgccg
7561 tttggaattc caccacagcc acgggactct gccatgtcat gcgaggtagc tacctggctg
7621 gaggctccat tgcttggact ctcatcaaga acgctgataa gccctccttg aaaaggggaa
7681 ggcctggggg caggacgcta ggggagcagt ggaaggaaaa actaaatgcc atgagcagag
7741 aagagttttt taaataccgg agagaggcca taatcgaggt ggaccgcact gaagcacgca
7801 gggctagacg tgaaaataac atagtgggag gacatccggt ttcgcgaggc tcagcaaaac
7861 tccgttggct tgtggagaaa ggatttgtct cgccaatagg aaaagtcatt gatctagggt
7921 gtgggcgtgg aggatggagc tactacgcag caaccctgaa gaaggtccag gaagtcagag
7981 gatacacgaa aggtggggcg ggacatgaag aaccgatgct catgcagagc tacggctgga
8041 acctggtctc cctgaagagt ggagtggacg tgttttacaa accttcagag cccagtgaca
8101 ccctgttctg tgacataggg gaatcctccc caagtccaga agtagaagaa caacgcacac
8161 tacgcgtcct agagatgaca tctgactggt tgcaccgagg acctagagag ttctgcatta
8221 aagttctctg cccttacatg cccaaggtta tagaaaaaat ggaagttctg cagcgccgct
8281 tcggaggtgg gctagtgcgt ctccccctgt cccgaaactc caatcacgag atgtattggg
8341 ttagtggagc cgctggcaat gtggtgcacg ctgtgaacat gaccagccag gtactactgg
8401 ggcgaatgga tcgcacagtg tggagagggc caaagtatga ggaagatgtc aacctaggga
8461 gcggaacaag agccgtggga aagggagaag tccatagcaa tcaggagaaa atcaagaaga
8521 gaatccagaa gcttaaagaa gaattcgcca caacgtggca caaagaccct gagcatccat
8581 accgcacttg gacataccac ggaagctatg aagtgaaggc tactggctca gccagctctc
8641 tcgtcaacgg agtggtggag ctcatgagca aaccttggga cgccattgcc aacgtcacca
8701 ccatggccat gactgacacc accccttttg gacagcaaag agttttcaag gagaaagttg
8761 acacgaaggc tcctgagcca ccagctggag ccaaggaagt gctcaacgag accaccaact
8821 ggctgtgggc ccacttgtca cgggaaaaaa gaccccgctt gtgcaccaag gaagaattca
8881 taaagaaagt caacagcaac gcggctcttg gagcagtgtt cgctgaacag aatcaatgga
8941 gcacggcgcg tgaggctgtg gatgacccgc ggttttggga gatggttgat gaagagaggg
9001 aaaaccatct gcgaggagag tgtcacacat gtatctacaa catgatggga aaaagagaga
9061 agaagcctgg agagtttgga aaagctaaag gaagcagggc catttggttc atgtggcttg
9121 gagcacggta tctagagttt gaagctttgg ggttcctgaa tgaagaccat tggctgagcc
9181 gagagaattc aggaggtgga gtggaaggct caggcgtcca aaagctggga tacatcctcc
9241 gtgacatagc aggaaagcaa ggagggaaaa tgtacgctga tgataccgcc gggtgggaca
9301 ctagaattac cagaactgat ttagaaaatg aagctaaggt actggagctc ctagacggtg
9361 aacaccgcat gctcgcccga gccataattg aactgactta caggcacaaa gtggtcaagg
9421 tcatgagacc tgcagcagaa ggaaagaccg tgatggacgt gatatcaaga gaagatcaaa
9481 gggggagtgg acaggtggtc acttatgctc ttaacacttt cacgaacatc gctgtccagc
9541 tcgtcaggct gatggaggct gagggggtca ttggaccaca acacttggaa cagctaccta
9601 gaaaaaccaa gatagctgtc aggacctggc tctttgagaa tggagaggag agagtgacca
9661 ggatggcgat cagcggagac gactgtgtcg tcaagccgct ggacgacaga ttcgccacag
9721 ccctccactt cctcaacgca atgtcaaagg tcagaaaaga catccaggaa tggaagcctt
9781 cgcatggctg gcacgattgg cagcaagttc ccttctgctc taaccatttt caggagattg
9841 tgatgaaaga tggaaggagt atagttgtcc cgtgcagagg acaggatgag ctgataggca
9901 gggctcgcat ctctccagga gctggatgga atgtgaagga cacagcttgc ctggccaaag
9961 catatgcaca gatgtggcta ctcctatact tccatcgcag ggacttgcgt ctcatggcaa
10021 atgcgatttg ctcagcagtg ccagtggatt gggtgcccac aggcaggaca tcctggtcaa
10081 tacactcgaa aggagagtgg atgaccacgg aagacatgct gcaggtctgg aacagagtct
10141 ggattgaaga aaatgaatgg atgatggaca agactccaat cacaagctgg acagacgttc
10201 cgtatgtggg aaagcgtgag gacatctggt gtggcagcct catcggaacg cgatccagag
10261 caacctgggc tgagaacatc tatgcggcga taaaccaggt tagagctgtc attgggaaag
10321 aaaattatgt tgactacatg acctcactca ggagatacga agacgtcttg atccaggaag
10381 acagggtcat ctagtgtgat ttaaggtaga aaagtagact atgtaaataa tgtaaatgag
10441 aaaatgcatg catatggagt caggccagca aaagctgcca ccggatactg ggtagacggt
10501 gctgcctgcg tctcagtccc aggaggactg ggttaacaaa tctgacaaca gaaagtgaga
10561 aagccctcag aaccgtctcg gaagtaggtc cctgctcact ggaagttgaa agaccaacgt
10621 caggccacaa atttgtgcca ctccgctagg gagtgcggcc tgcgcagccc caggaggact
10681 gggttaccaa agccgttgag cccccacggc ccaagcctcg tctaggatgc aatagacgag
10741 gtgtaaggac tagaggttag aggagacccc gtggaaacaa caacatgcgg cccaagcccc
10801 ctcgaagctg tagaggaggt ggaaggacta gaggttagag gagaccccgc atttgcatca
10861 aacagcatat tgacacctgg gaatagactg ggagatcttc tgctctatct caacatcagc
10921 tactaggcac agagcgccga agtatgtagc tggtggtgag gaagaacac
//