GenBank-Updates@genbank.bio.net (02/19/91)
LOCUS HIVU455A 9178 bp ds-DNA VRL 19-FEB-1991
DEFINITION Human immunodeficiency virus type 1 Ugandan isolate U455, complete
proviral genome.
ACCESSION M62320
KEYWORDS complete genome; env protein; gag protein; nef protein; pol
protein; rev protein; tat protein; vif protein; vpr protein; vpu
protein.
SOURCE Human immunodeficiency virus type 1 Ugandan isolate U455 proviral
DNA.
ORGANISM Human immunodeficiency virus type 1
Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
Retroviridae; Lentivirinae.
REFERENCE 1 (bases 1 to 9178)
AUTHORS Orom,J.D., Downing,R.G., Roff,M., Clegg,J.C., Serwodda,D. and
Carswell,J.W.
TITLE Nucleotide sequence of a Ugandan HIV provirus reveals genetic
diversity from other HIV-1 isolated
JOURNAL AIDS Res. Hum. Retroviruses 6, 1073-1078 (1990)
STANDARD full staff_entry
FEATURES Location/Qualifiers
CDS join(5276..5491,7810..7899)
/gene="tat"
/codon_start=5276
CDS join(5415..5492,7811..8104)
/gene="rev"
/codon_start=5415
LTR 1..103
/note="5' LTR"
CDS 257..1738
/product="gag protein"
/gene="gag"
/codon_start=257
CDS 1533..4542
/product="pol protein"
/gene="pol"
/codon_start=1534
/partial
CDS 4487..5065
/product="vif protein"
/gene="vif"
/codon_start=4487
CDS 5005..5295
/pseudo
/product="vpr protein"
/gene="vpr"
/codon_start=5005
exon 5276..5491
/number=1
/gene="tat"
exon 5415..5492
/number=1
/gene="rev"
CDS 5511..5758
/pseudo
/product="vpu protein"
/gene="vpu"
/codon_start=5511
CDS 5676..8246
/pseudo
/product="envelope protein"
/gene="env"
/codon_start=5676
exon 7810..7899
/number=2
/gene="tat"
exon 7811..8104
/number=2
/gene="rev"
CDS 8248..8865
/product="nef protein"
/gene="nef"
/codon_start=8248
LTR 8537..9000
/note="3' LTR"
BASE COUNT 3265 a 1636 c 2208 g 2069 t
ORIGIN
1 aagcttgcct tgagtgcttg aagtagtgtg tgcccgtctg ttatttgact ctggtaacta
61 gagatccctc agaccactat agactgtgta aaaatctcta gcagtggcgc ccgaacaggg
121 actcgaaagc gaaagttcca gagaagttct ctcgacgcag gactcggctt gctgaggtgc
181 acacagcaag aggcgagagc ggcgactggt gagtacgcct aaaatttttt gactagcgga
241 ggctagaagg agagaaatgg gtgcgagagc gtcagtatta agcgggaaaa aattagattc
301 atgggagaaa attcggttaa ggccaggggg aaacaaaaaa tatagactga aacatttagt
361 atgggcaagc agggagctgg aaaaattcac acttaaccct ggccttttag aaacagcaga
421 aggatgtcag caaatactgg gacaattaca accagctctc cagacaggaa cagaagaact
481 tagatcatta tataatacag tagcagtcct ctattgtgta catcaaagga tagatgtaaa
541 agacaccaag gaagctttaa ataaaataga ggaaatgcaa aataagaaca agcaaaggac
601 acagcaggca gcagctaaca caggaagcag tcaaaattac cccatagtgc aaaatgcaca
661 agggcaacca gtacaccagg ccttatcacc taggaccttg aatgcatggg tgaaagtagt
721 agaagacaag gctttcagcc cagaagtaat acccatgttt tcagcattat cagagggagc
781 caccccacaa gatttaaata tgatgctgaa tgtagtgggg ggacaccagg cagctatgca
841 aatgttaaaa gataccatca atgaggaagc tgcagagtgg gacaggttac atccagtgca
901 tgcagggcct attccaccag gccagatgag agaaccaagg ggaagtgaca tagcaggaac
961 tactagcacc gttcaagaac aaataggatg gatgacaggc aatccaccta tcccagtggg
1021 agacatctat agaagatgga taatcctggg attaaataaa atagtaagaa tgtatagccc
1081 tgttagcatt ttggacataa gacaagggcc aaaagaaccc ttcagggatt atgtagatag
1141 attctttaaa actctcagag ctgagcaagc tacacaggat gtaaaaaact ggatgacaga
1201 aaccttgctg gtccaaaatg cgaatccaga ctgtaagtcc attttaagag cattagggcc
1261 aggggctaca ttagaagaaa tgatgacagc atgccaggga gtgggaggac ccggccataa
1321 agcaagggtt ttggctgagg caatgagtca agtacaacag acaagcataa tgatgcagag
1381 aggcaatttt aggggcccga gaagaattaa gtgtttcaac tgtggcaaag aaggacacct
1441 agccaaaaat tgtagggccc ctaggaaaaa gggctgttgg aaatgcggga aagaaggaca
1501 ccaaatgaaa gactgcactg agagacaggc taatttttta gggaaaattt ggccttccaa
1561 caaggggagg ccagggaatt ttcctcagag cagaccagag ccaacagccc caccagcaga
1621 aatctttggg atgggggaaa agatgacctc ccctgcgaaa caggagctga aagacaggga
1681 acagactcct ttagtttccc tcaaatcact ctttggcaac gaccccttgt cacagtaaaa
1741 ataggaggac agctgataga agctctatta gatacaggag cagatgatac agtcttagaa
1801 gacataaatt tgccaggaaa atggaaacca aaaataatag ggggaattgg aggttttatc
1861 aaagtaagac agtatgatca gatacttata gaaatttgtg gaaaaaagac tataggtaca
1921 gtattggtag gacctacacc tgtcaacata attggaagga atatgttgac tcagattggt
1981 tgtactttaa attttccaat tagtcctatt gaaactgtac cagtaaaatt aaaaccagaa
2041 atggatggcc caaaggttaa acaatggcca ttgacagaag agaaaataaa agcattaaca
2101 gaaatttgta atgagatgga aaaggaagga aaaatttcaa aaattgggcc tgaaaatcca
2161 tacaatactc cagtatttgc tataaagaaa aaggacagca ctaaatggag gaaattagta
2221 gatttcagag aactcaataa aagaactcag gacttctggg aagttcaatt aggaatcccg
2281 catacagcgg gtctaaaaaa gaaaaaatca gtaacagtac tagatgtggg ggacgcatat
2341 ttttcagttc ctttagatga aagctttaga aagtatactg cgttcaccat acctagtata
2401 aacaatgaga caccaggagt caggtatcag tacaatgtgc ttccgcaggg atggaaagga
2461 tcaccatcaa tattccagag tagcatgaca aaaatcttag agccctttag atcacaacat
2521 ccagacatag ttatctatca atacatggat gacttgtatg tgggatctga tttagaaata
2581 gggcaacata gagcaaaaat agaggaatta agagctcatc tattgagctg gggattcatt
2641 accccagaca aaaagcatca gaaagaacct ccatttcttt ggatggggta tgaacttcat
2701 cctgacaaat ggacagttca gcctatacag ctgccagaaa aagacagctg gactgtcaat
2761 gatatacaga aattagtagg aaaactaaat tgggcaagtc agatttatgc agggattaaa
2821 gtaaagcaac tgtgtaaact tctcagggga gccaaagcac taacagatat agtaaccctg
2881 actgaagaag cagaattaga attggcagag aacagggaga ttctaaaaga ccctgtgcat
2941 ggagtatatt atgacccatc aaaagaccta gtagcagaaa tacagaaaca agggcaagac
3001 caatggacat atcaaattta tcaagagcca tttaaaaatc tgaaaacagg aaaatatgca
3061 agaaaaaggt ctgctcacac taatgatgta aaacaattaa cagaagtggt gcaaaaagtg
3121 tccacagaaa gcatagtaat atggggaaag atccctaaat ttagactacc catacaaaag
3181 gaaacatggg aagcatggtg gatggagtat tggcaggcta cctggattcc tgaatgggag
3241 tttgtcaata cccctcccct agtaaaatta tggtaccagt tagagaaaga ccccatagca
3301 ggagcagaga cattctatgt agatggggca gctaataggg aaactaagct aggaaaagca
3361 gggtatgtca ctgacagagg aagacaaaag gttgtttccc taactgagac aacaaatcaa
3421 aagactgaat tacatgcaat ccatctagcc ttgcaggatt caggatcaga agtaaatata
3481 gtaacagact cacagtatgc attagggatc attcaggcac aaccagacag gagtgaatca
3541 gaaatagtca atcaaataat agagaagcta atagaaaagg aaaaagtcta cctgtcatgg
3601 gtaccagcgc acaaagggat tggaggaaat gagcaagtag ataaattagt cagttctgga
3661 atcaggaagg tgctattttt agatgggata gataaggctc aagaggacca tgaaaaatat
3721 cactgcaact ggagagcaat ggctagtgat tttaatctgc cacctgtggt agcgaaggaa
3781 atagtagcca gctgtaataa atgtcaacta aaaggggaag ccatgcatgg acaagtagac
3841 tgtagtccag ggatatggca attagattgc acacatctag aaggaaaagt aatcctagta
3901 gcagtccatg tagccagtgg ctacatagaa gcagaagtta tcccagcaga aacaggacag
3961 gagacagcat actttatact aaaattagca ggaagatggc cagtaaaagt aatacacaca
4021 gacaatggca gcaatttcac cagcgctgca gttaaagcag tctgttggtg ggcaaatatc
4081 caacaggaat ttgggatccc ctacaatccc caaagtcaag gagtagtgga atccatgaac
4141 aaggaattaa agaaaatcat agggcaggta agagagcaag ctgaacacct taagacagca
4201 gtacaaatgg cagtattcat tcacaatttt aaaagaaaag gggggattgg gggatacagt
4261 gcaggggaaa gaataataga cataatagca acagacatac aaactaaaga attacaaaaa
4321 caaatttcaa aaattcaaaa ttttcgggtt tattacaggg acagcagaga ccccatttgg
4381 aaaggaccag caaaactact ctggaaaggt gaaggggcag tagtaataca agacaatagt
4441 gatataaagg tagtaccaag aagaaaagca aagatcatta gggattatgg aaaacagatg
4501 gcaggtgatg attgtatggc aggtagacag gatgaagatt agaacatgga acagtttagt
4561 aaaacatcac atgtatgtct ccaagaaagc tcaaggttgg ttttatagac atcactatga
4621 aagtagacat tcaagagtaa gttcagaagt acacatccca ctaggggaag ctagattagt
4681 agtaagaaca tattggggtc tgcatacagg agaaaaagac tggcacttgg gtcatggggt
4741 ctccatagaa tggaggctga aaagatatag cacacaagta gatcctgacc tagcagacca
4801 tctaattcac ctgcattatt ttgactgttt ttcagaatct gccataagga gagccatatt
4861 aggacaaata gttagaccta ggtgtgaata tcaagcagga cataacaagg taggatctct
4921 acaatatttg gctctgaaag cattagtaac cccaacaagg gcaaagccac ctttgcctag
4981 tgttaagaaa ttaacagagg atagatggaa caagccccag aagaccaggg gccacagagg
5041 gagccgtacg ctgaataggc attagagttg ttagaagagc ttaagcatga agatgttaga
5101 cattttccta ggcagtggct ccatggatta ggacaacata tctataacac ctatggggat
5161 acttgggagg gagttgaagc tataataaga attttgcaac aattactgtt tattcatttc
5221 agaattgggt gccaacatag cagaataggc attattccag ggagaagagg caggaatgga
5281 gccagtagat cctaacctag agccctggaa acacccggga agtcagccta caactgcttg
5341 tagcaactgt tattgtaaag tgtgttgctg gcattgccaa ctttgctttc tgaaaaaagg
5401 cttaggcatt tcctatggca agaagaagcg gaaaccccga cgaggacctc ctcaaggcag
5461 taaggatcat caaactctta taccaaagca gtaagtaatt agcttatgta atgacacctt
5521 tggaaatctg ggcaataaca gggctgatag tagcactaat cttagcaata gtagtgtgga
5581 ctatagtagg tatagaataa aaaaaaaatt gctaaagcaa aaaaaaatag acaggttatt
5641 aaacagaata agagaaagag cagaagacag tggcaatgag agtgatgggg atacagagga
5701 attatccttg cttgtggaga tggggaacta tgatcttggg gttgataata atttgtaatg
5761 cacaacaatt gtgggtcacg gtctactatg gggtacctgt gtggaaagat gcagttacca
5821 ccctattttg tgcatcagat gctaaagcat atgatgcaga agtgcataat gtctgggcta
5881 cacatgcctg tgtacccaca gaccccaacc cacaagaaat agatttggtc aatgtgacag
5941 aagaatttaa catgtggaaa aataacatgg tagatcagat gcatgaagat ataatcagtc
6001 tatgggacca aagcctaaag ccatgtgtaa agttaacccc tctctgcgtt acgttagatt
6061 gccataacat caccattaac aacaccaata acaacaccaa tatcacagat ggagtgaggg
6121 aagaaatgaa aaattgctct ttcaatatga ccacagaact aagagataag aaacagaaag
6181 tatattcact tttttataga cttgatatag tacaaatcaa taaaactgat aacaatagtt
6241 atagactaat aaattgtaat acctcaacca ttacacaggc ttgtcccaag gtgtcctttg
6301 agccaattcc catacattat tgtgccccag ctggttttgc gattctaaag tgtaaggatc
6361 ctgagttcaa tggaaaaggg ccatgcagga atgtcagcac agtacaatgt acacatggaa
6421 tcaagccagt ggtatcaact caactgctgt taaatggcag tctagcagaa agagaaataa
6481 ggattagatc tgaaaatttc acaaacaatg caaaaaccat aatagtacag cttgtcaatc
6541 ctgtaaaaat caattgttcc agaccttaca atacaagaaa aaatatacgt aggtatagta
6601 taggatcagg acaagcattc tatgtaacag gtaaaataat aggggatata agacaagcac
6661 attgtaatgt cagtagaagg gactggaata gaactataca acaggtagct gaacaattaa
6721 agaaaaagtt taataacaaa acaataatct ttgctagctc ctcaggaggg gatatagaaa
6781 ttacaacaca tagctttaat tgtggaggag aatttttcta ttgcaacaca tcaggcctgt
6841 ttaatagcat ttggaatggc agcatgtcaa atgacatggg gccaaatggc actataactc
6901 tccaatgtag aataaagcaa attataaata tgtggcagag agtaggacaa gcaatgtatg
6961 cccctcccat ccaaggagta ataaggtgtg aatcaaacat tacaggacta ctattaacaa
7021 gagatggggg tactaacaat acaaaaaatg agaccttcag acctggagga ggagatatga
7081 gggacaattg gaaaagtgaa ttatataagt ataaagtagt aaaaattgaa ccactaggag
7141 tagcacccac cagggcaaag agaagagtgg tggagagaga aaaaagagca gttggactag
7201 gagctatctt ccttgggttc ttaggagcag ctggaagcac aatgggcgcg gcgtcaataa
7261 cgctgacggt acaggccaga caattattgt ctggtatagt gcaacagcag agcaatctgc
7321 tgagggctat agaggctcaa cagcatctgt tgaaactcac tgtctggggc attaaacagc
7381 tccaggcaag agtcctggct gtggaaagat acctacagga tcaacagctc ctaggaattt
7441 ggggctgctc tggaaagctc atctgcacca ctactgtgcc ctggaactct agttggagta
7501 ataaatctca ggaggacata tggaataaca tgacctggct gcaatgggag aaagaaatta
7561 gtagttacac aggcataata tatcaactaa ttgaggaatc gcagaaccag caggaaaaga
7621 atgaactaga cttattggca ttggacaagt gggcaaatct gtgaaattgg tttaacatct
7681 caaattggct gtggtatatt agactatttg taataatagt aggaggctta ataggattaa
7741 gaatagtttt tactgtgctt tctataatca atagagttag gcagggatac tcacctctgt
7801 cgtttcagac ccttgcccca atcccagagg gtctcggcag gccaggaaga atcgaagaag
7861 aaggtggaga gcaaggcaaa gacagatcga ttcgcttagt gagcggattc ttagcgattg
7921 cctgggacga cctgcggaac ctgtgcctct tcagctacca ccgattgaga gacttcgcct
7981 tgattgtagc gagagctgtg gaacttctgg gacgcagcag cctcaaggga ctgagactgg
8041 ggtgggaggg cctcaaatat ctgtggaatc ttctgctgta ttggggtcgg gaactaaaaa
8101 ttagtgctat tactttgctt gacgctgtag cagtagcagt agctgggtgg atagataggg
8161 ttatagaaat aggacaaaca attggtagag ctattctcaa catacctaga agaatcagac
8221 aaggcttaga aagggctttg ctataacatg ggtggcaagt ggtcaaaaaa gagcagagtg
8281 gaatggcctg aggttaggaa aagaatgaga gaaactcctg cagcagcaaa aggagtagga
8341 gcagtatctc aagatttaga taaatatgga gcagtcacaa gcagtaatac atcatctact
8401 aatgccagtt gtgcctggct ggaagcgcaa gaggaaggag acgtaggctt cccagttagg
8461 ccacaggtac ctttaagacc aatgacttat aaggcagctt ttgatctcag cttcttttta
8521 aaagaaaagg ggggactgga tgggttaatt cactcacaga aaagacaaga aatccttgat
8581 ctgtgggtct atcacacaca aggattcttc cctgattggc agaattacac accagggcca
8641 ggaatcagat acccactaac atttggatgg tgctacaagc tagtaccagt tgatccagct
8701 gaagtagagg aagctactgg aggagagaac aacagtctac tacaccctat atgccaacat
8761 ggagtagatg atgaagagaa agaagtgtta atgtggaagt ttgacagtac cctggcatta
8821 aaacacagag cttatgagct gcatccggag ttctataaag actgaaagac tgctgacaca
8881 gaagttgctg acagggactt tccactgggg actttccgag ggaggtgtgg tttgggcgga
8941 gttggggagt ggctagccct cagatgctgc atataagcag ctgcttttcg cctgtactgg
9001 gtctctcttg ttagaccaga tcgagcctgg gagctctctg gctagcgagg gaacccactg
9061 cttaagcctc aataaagctt gccttgaggt gcttgaagta gtgtgtgccc gtctgttatt
9121 tgactctggt aactagagat ccctcagacc actatagact gtgtaaaaat ctctagca
//