GenBank-Updates@genbank.bio.net (02/22/91)
LOCUS HSSRSP40 4008 bp ds-DNA VRL 22-FEB-1991 DEFINITION Pseudorabies virus genome, RSp40 and pk genes. ACCESSION D00676 D00545 KEYWORDS complete genome; protein kinase. SOURCE Pseudorabies virus (strain Ka) DNA, clone pPRVB10. ORGANISM Pseudorabies virus Viridae; ds-DNA enveloped viruses; Herpesviridae; Alphaherpesvirinae. REFERENCE 1 (sites) AUTHORS Rea,T.J., Timmins,J.G., Long,G.W. and Post,L.E. TITLE Mapping and sequence of the gene for the pseudorabies virus glycoprotein which accumulates in the medium of infected cells JOURNAL J. Virol. 54, 21-29 (1985) STANDARD full staff_review REFERENCE 2 (bases 1 to 2672) AUTHORS Zhang,G. and Leader,D.P. TITLE The structure of the pseudorabies virus genome at the end of inverted repeat sequences proximal to the junction with the short unique region JOURNAL J. Gen. Virol. (1990) In press STANDARD full staff_review REFERENCE 3 (bases 2673 to 4008) AUTHORS Zhang,G., Stevens,R. and Leader,D.P. TITLE The protein kinase encoded in the short unique region of pseudorabies virus: Description of the gene and identification of its product in virions and in infected cells JOURNAL J. Gen. Virol. 71, 1757-1765 (1990) STANDARD full staff_review COMMENT [J. Virol. 54, 21-29 (1985)] sites. These data kindly submitted in computer readable form by: David P. Leader Department of Biochemistry University of Glasgow G12 8QQ, Glasgow Scotland U.K. Phone: +41 3398855 x5265 or 6448 Email: GBCA26@VMS3.GLA.AC.UK (Janet) Fax: +41 3304620 Telex: 777070 FEATURES Location/Qualifiers misc_signal 1782..1787 /note="pot. polyadenylation signal" repeat_region 1870..2278 /note="sequence of 11.5 copies of reiterated 35mer" repeat_region 2343..2432 /note="sequence of 9 copies of reiterated 10mer" misc_feature 2533..2533 /note="end of internal short repeat region" misc_feature 2534..2534 /note="start of unique short region" CDS 2923..3927 /note="protein kinase (EC 2.7.1.37)" CDS 3987..>4008 /note="glycoprotein X" BASE COUNT 644 a 1273 c 1577 g 514 t ORIGIN About 80-85% genome % units. 1 ggatcccccg gtcggggtgg gccgggagtg ggcgtggcaa ctcctccccg tcccccctcc 61 ctccccaccc cgcgcgatcg cgctcatcgt atccgttctc gtttcaggtg ccgcatcgtt 121 ccggaagaaa cgcctcgggg gtcgcgcgtc cgtcgcctag gtgagtcggg gggcttcccg 181 ggtgcggctc ctcccccctc ccctcccccg ggttgggttg ggcgggtggg cgggtgggcg 241 ggggtcggga gggatcgggg gaaggggggg ggtcgtggct cacgctgacg tcatgcgttt 301 cccccccccc cacagggacg cgagcgggac cggctggtcg accacccatt caatccatcc 361 aatccatcca gccaccccca cccgtcgggg cggccgggct cgggtccggt tccgggtcgg 421 cgtcggggag cctcgcccac ccacccggcc cccgtcccag cccagccccc cccccccccc 481 cccccccccc cacgccccca tcgcaccccc tcccaccccg ttcccaccac cccgccgacc 541 ccccgctcga ccgcccgccc ccgacccacc gcgtccgccg cgcccatgga ccgggtctgg 601 gccgactggt acgagcccgt gccctccccg ccgttctcgc ccgtcgaccc gcccgggccc 661 cggcccacga ccccggtccc ggggagcagc cccccgtccc ccgcctcgac ccccacgccc 721 cccaagcgcg ggcgctacgt cgtcgagcac cccgagtacg ggcccccgcc cgaccccgag 781 gaggtgcgcg tccacggcgc gcggggcccc ggcgccttct gcgcggcccc ctggcgcccc 841 gacacgcggc gcctcggggc cgacgtgaac cgcctctttc gcggcatcgc cgtctcggcc 901 gccgacgtga cgggcgacac gcgcgccctg cgccgcgccc tctttgactt ttacgccatg 961 ggctacacgc gccagcgccc ctcggccccc tgctggcagg ccctgctcca gctctcgccc 1021 gagcagagcg ccccgctgcg cagcgcgctg cgcgagctca acgagcgcga cgtctacgac 1081 ccgcgcgtcc tctccccgcc ggtcatcgag ggcccgctct ttggggagga gtgcgacgtc 1141 gacgaggacg acgccggctc ggacaccacc gtcgcgtccg agtttagctt ccgcggctcg 1201 gtgtgcgagg acgacgggga ggacgaggac gaagaggaag acggggagga ggaagacgag 1261 gacgaggagg gggaagagga agaagacgag gaggaagagg aaggggacga ggacggggag 1321 acggacgtgt acgaggagga cgacgaggcc gaggacgagg aggacgagga ggacggggac 1381 gactttgacg gggccagcgt gggcgacgac gacgtgtttg agccccccga ggacggctcg 1441 gacggagagg gctcgggctc ggacgacggc ggggacgggg aagatgaaga cgaggacgaa 1501 gatgaagacg aggacgagga cgatggagag gacgaggagg acgaggaagg ggaggacggg 1561 ggggaagacg gcgaagacgg tgaagaagac gaagacgaag acggagaggg cgaggagggc 1621 gggaaggacg ccgcccgccg ggggacgcgc gccccgacgc ggcccgccgc cgccccgtga 1681 ggcgggcctc gccccgcgct gttctttcct ccccccaccc cccccacccc accgtccgcc 1741 ccatcgtttg cccctctccc cctcccctct gttgtgccct caataaacac ggcggcccgc 1801 cgctcgaacc tcaactctct cgtctctcgg gcgttttttc cctcccggcc ctcgtgggga 1861 agggagatgg gggtggagac ggtggaggga gaggggagtg ggatggggtg gagacggtgg 1921 agggagaggg gagtgggatg gggtggagac ggtggaggga gaggggagtg ggatggggtg 1981 gagacggtgg agggagaggg gagtgggatg gggtggagac ggtggaggga gaggggagtg 2041 ggatggggtg gagacggtgg agggagaggg gagtgggatg gggtggagac ggtggaggga 2101 gaggggagtg ggatggggtg gagacggtgg agggagaggg gagtgggatg gggtggagac 2161 ggtggaggga gaggggagtg ggatggggtg gagacggtgg agggagaggg gagtgggatg 2221 gggtggagac ggtggaggga gaggggagtg ggatggggtg gagacggtgg agggagagaa 2281 aggacggagg cgtgtcatcg ggtgccagag cgagagcgtt tattgttaaa gttgttggtg 2341 gggggggagt ccgggggagt ccgggggagt ccgggggagt ccgggggagt ccgggggagt 2401 ccgggggagt ccgggggagt ccgggggagt cctcggcggc tattggtggg aagggggagt 2461 gacgtcaggg cagcgggggg gggggaaggg ggggaagggg ggagatgggg gagggagaga 2521 gaggacggag gcggcgcgag tctgtcggat ggcgccaggg gggggcgggc ggccgcgggg 2581 agggatgacg ggcgcgcgtg gggcggcggc gcccccgtcg cggtcgagaa ccaccgccgc 2641 cgtcaccgcc gcctcccatc cgatgtgata tcgcggcacg ccggccgtcc cggcgctcat 2701 tcacaccgca cccgttcgcc cacgtccccg cggccaagca cacacaccaa ctcgcgcacc 2761 atgttggcga tgtggagatg ggtcaccaag aggtcgcggc tccgccgagg ccacgcccat 2821 cttgggggaa ataaaggagt ccggggaatt tgttccttat accttgccgg gctcagcagg 2881 gggttgtcgc gcgtccacgc ccagcgctcg cacgcagcaa caatggccga cgccggaatc 2941 cccgacgaga tcctgtactc ggacatcagc gacgacgaga tcatcatcga cggcgacggc 3001 gacagcagcg gggacgagga cgacgatgac ggggggctga cgcggcaggc cgcggcgcgc 3061 atcgtcacgg acctgggctt cgaggtgctg cagcccctgc agtcgggctc ggagggccgc 3121 gtcttcgtgg cccgccggcc gggcgaggcg gacacggtgg tgctgaaggt gggccagaag 3181 ccctcgacgc tgatggaggg catgctgctg cagcgcctgt cccacgataa cgtcatgcgc 3241 atgaaacaga tgctcgcccg gggcccggcg acgtgcctgg tcctgccgca ctttcggtgc 3301 gatctgtaca gctacctgac catgcgggac gggccgctgg acatgcgcga cgccgggtgc 3361 gtgatccggg ccgtgctccg cgggctcgcc tacctgcacg ggatgcgcat catgcatcgc 3421 gacgtcaagg cggagaacat cttcctcgag gacgtggaca cggtgtgcct aggggacctc 3481 ggggccgcgc gctgcaacgt ggcggcgccc aacttttacg ggctcgccgg gaccatcgag 3541 accaacgccc ccgaggtgct cgcgcgcgac cgctacgaca ccaaggtcga cgtctggggc 3601 gcgggggtgg tgctcttcga gacgctggcc taccccaaga cgatcaccgg cggggacgag 3661 cccgcgatca acggggagat gcacctgatc gacctcatcc gcgccctcgg ggtgcacccc 3721 gaggagttcc cgcccgacac gcgcctccgg agcgagttcg tccggtacgc cgggacccac 3781 cgccagccgt acacgcagta cgcgcgcgtg gctcgcctcg ggctgcccga gacgggggct 3841 ttcctgattt acaagatgtt gacgtttgat cccgtccgcc gcccttccgc tgatgagata 3901 ctcaactttg gaatgtggac cgtataaaac gggccggctc cgagcggtag gacacacaca 3961 cctttgcgca tctccacagc tcaacaatga agtgggcaac gtggatcc //