GenBank-Updates@genbank.bio.net (02/22/91)
LOCUS HSSRSP40 4008 bp ds-DNA VRL 22-FEB-1991
DEFINITION Pseudorabies virus genome, RSp40 and pk genes.
ACCESSION D00676 D00545
KEYWORDS complete genome; protein kinase.
SOURCE Pseudorabies virus (strain Ka) DNA, clone pPRVB10.
ORGANISM Pseudorabies virus
Viridae; ds-DNA enveloped viruses; Herpesviridae;
Alphaherpesvirinae.
REFERENCE 1 (sites)
AUTHORS Rea,T.J., Timmins,J.G., Long,G.W. and Post,L.E.
TITLE Mapping and sequence of the gene for the pseudorabies virus
glycoprotein which accumulates in the medium of infected cells
JOURNAL J. Virol. 54, 21-29 (1985)
STANDARD full staff_review
REFERENCE 2 (bases 1 to 2672)
AUTHORS Zhang,G. and Leader,D.P.
TITLE The structure of the pseudorabies virus genome at the end of
inverted repeat sequences proximal to the junction with the short
unique region
JOURNAL J. Gen. Virol. (1990) In press
STANDARD full staff_review
REFERENCE 3 (bases 2673 to 4008)
AUTHORS Zhang,G., Stevens,R. and Leader,D.P.
TITLE The protein kinase encoded in the short unique region of
pseudorabies virus: Description of the gene and identification of
its product in virions and in infected cells
JOURNAL J. Gen. Virol. 71, 1757-1765 (1990)
STANDARD full staff_review
COMMENT
[J. Virol. 54, 21-29 (1985)] sites.
These data kindly submitted in computer readable form by:
David P. Leader
Department of Biochemistry
University of Glasgow
G12 8QQ, Glasgow
Scotland
U.K.
Phone: +41 3398855 x5265 or 6448
Email: GBCA26@VMS3.GLA.AC.UK (Janet)
Fax: +41 3304620
Telex: 777070
FEATURES Location/Qualifiers
misc_signal 1782..1787
/note="pot. polyadenylation signal"
repeat_region 1870..2278
/note="sequence of 11.5 copies of reiterated 35mer"
repeat_region 2343..2432
/note="sequence of 9 copies of reiterated 10mer"
misc_feature 2533..2533
/note="end of internal short repeat region"
misc_feature 2534..2534
/note="start of unique short region"
CDS 2923..3927
/note="protein kinase (EC 2.7.1.37)"
CDS 3987..>4008
/note="glycoprotein X"
BASE COUNT 644 a 1273 c 1577 g 514 t
ORIGIN About 80-85% genome % units.
1 ggatcccccg gtcggggtgg gccgggagtg ggcgtggcaa ctcctccccg tcccccctcc
61 ctccccaccc cgcgcgatcg cgctcatcgt atccgttctc gtttcaggtg ccgcatcgtt
121 ccggaagaaa cgcctcgggg gtcgcgcgtc cgtcgcctag gtgagtcggg gggcttcccg
181 ggtgcggctc ctcccccctc ccctcccccg ggttgggttg ggcgggtggg cgggtgggcg
241 ggggtcggga gggatcgggg gaaggggggg ggtcgtggct cacgctgacg tcatgcgttt
301 cccccccccc cacagggacg cgagcgggac cggctggtcg accacccatt caatccatcc
361 aatccatcca gccaccccca cccgtcgggg cggccgggct cgggtccggt tccgggtcgg
421 cgtcggggag cctcgcccac ccacccggcc cccgtcccag cccagccccc cccccccccc
481 cccccccccc cacgccccca tcgcaccccc tcccaccccg ttcccaccac cccgccgacc
541 ccccgctcga ccgcccgccc ccgacccacc gcgtccgccg cgcccatgga ccgggtctgg
601 gccgactggt acgagcccgt gccctccccg ccgttctcgc ccgtcgaccc gcccgggccc
661 cggcccacga ccccggtccc ggggagcagc cccccgtccc ccgcctcgac ccccacgccc
721 cccaagcgcg ggcgctacgt cgtcgagcac cccgagtacg ggcccccgcc cgaccccgag
781 gaggtgcgcg tccacggcgc gcggggcccc ggcgccttct gcgcggcccc ctggcgcccc
841 gacacgcggc gcctcggggc cgacgtgaac cgcctctttc gcggcatcgc cgtctcggcc
901 gccgacgtga cgggcgacac gcgcgccctg cgccgcgccc tctttgactt ttacgccatg
961 ggctacacgc gccagcgccc ctcggccccc tgctggcagg ccctgctcca gctctcgccc
1021 gagcagagcg ccccgctgcg cagcgcgctg cgcgagctca acgagcgcga cgtctacgac
1081 ccgcgcgtcc tctccccgcc ggtcatcgag ggcccgctct ttggggagga gtgcgacgtc
1141 gacgaggacg acgccggctc ggacaccacc gtcgcgtccg agtttagctt ccgcggctcg
1201 gtgtgcgagg acgacgggga ggacgaggac gaagaggaag acggggagga ggaagacgag
1261 gacgaggagg gggaagagga agaagacgag gaggaagagg aaggggacga ggacggggag
1321 acggacgtgt acgaggagga cgacgaggcc gaggacgagg aggacgagga ggacggggac
1381 gactttgacg gggccagcgt gggcgacgac gacgtgtttg agccccccga ggacggctcg
1441 gacggagagg gctcgggctc ggacgacggc ggggacgggg aagatgaaga cgaggacgaa
1501 gatgaagacg aggacgagga cgatggagag gacgaggagg acgaggaagg ggaggacggg
1561 ggggaagacg gcgaagacgg tgaagaagac gaagacgaag acggagaggg cgaggagggc
1621 gggaaggacg ccgcccgccg ggggacgcgc gccccgacgc ggcccgccgc cgccccgtga
1681 ggcgggcctc gccccgcgct gttctttcct ccccccaccc cccccacccc accgtccgcc
1741 ccatcgtttg cccctctccc cctcccctct gttgtgccct caataaacac ggcggcccgc
1801 cgctcgaacc tcaactctct cgtctctcgg gcgttttttc cctcccggcc ctcgtgggga
1861 agggagatgg gggtggagac ggtggaggga gaggggagtg ggatggggtg gagacggtgg
1921 agggagaggg gagtgggatg gggtggagac ggtggaggga gaggggagtg ggatggggtg
1981 gagacggtgg agggagaggg gagtgggatg gggtggagac ggtggaggga gaggggagtg
2041 ggatggggtg gagacggtgg agggagaggg gagtgggatg gggtggagac ggtggaggga
2101 gaggggagtg ggatggggtg gagacggtgg agggagaggg gagtgggatg gggtggagac
2161 ggtggaggga gaggggagtg ggatggggtg gagacggtgg agggagaggg gagtgggatg
2221 gggtggagac ggtggaggga gaggggagtg ggatggggtg gagacggtgg agggagagaa
2281 aggacggagg cgtgtcatcg ggtgccagag cgagagcgtt tattgttaaa gttgttggtg
2341 gggggggagt ccgggggagt ccgggggagt ccgggggagt ccgggggagt ccgggggagt
2401 ccgggggagt ccgggggagt ccgggggagt cctcggcggc tattggtggg aagggggagt
2461 gacgtcaggg cagcgggggg gggggaaggg ggggaagggg ggagatgggg gagggagaga
2521 gaggacggag gcggcgcgag tctgtcggat ggcgccaggg gggggcgggc ggccgcgggg
2581 agggatgacg ggcgcgcgtg gggcggcggc gcccccgtcg cggtcgagaa ccaccgccgc
2641 cgtcaccgcc gcctcccatc cgatgtgata tcgcggcacg ccggccgtcc cggcgctcat
2701 tcacaccgca cccgttcgcc cacgtccccg cggccaagca cacacaccaa ctcgcgcacc
2761 atgttggcga tgtggagatg ggtcaccaag aggtcgcggc tccgccgagg ccacgcccat
2821 cttgggggaa ataaaggagt ccggggaatt tgttccttat accttgccgg gctcagcagg
2881 gggttgtcgc gcgtccacgc ccagcgctcg cacgcagcaa caatggccga cgccggaatc
2941 cccgacgaga tcctgtactc ggacatcagc gacgacgaga tcatcatcga cggcgacggc
3001 gacagcagcg gggacgagga cgacgatgac ggggggctga cgcggcaggc cgcggcgcgc
3061 atcgtcacgg acctgggctt cgaggtgctg cagcccctgc agtcgggctc ggagggccgc
3121 gtcttcgtgg cccgccggcc gggcgaggcg gacacggtgg tgctgaaggt gggccagaag
3181 ccctcgacgc tgatggaggg catgctgctg cagcgcctgt cccacgataa cgtcatgcgc
3241 atgaaacaga tgctcgcccg gggcccggcg acgtgcctgg tcctgccgca ctttcggtgc
3301 gatctgtaca gctacctgac catgcgggac gggccgctgg acatgcgcga cgccgggtgc
3361 gtgatccggg ccgtgctccg cgggctcgcc tacctgcacg ggatgcgcat catgcatcgc
3421 gacgtcaagg cggagaacat cttcctcgag gacgtggaca cggtgtgcct aggggacctc
3481 ggggccgcgc gctgcaacgt ggcggcgccc aacttttacg ggctcgccgg gaccatcgag
3541 accaacgccc ccgaggtgct cgcgcgcgac cgctacgaca ccaaggtcga cgtctggggc
3601 gcgggggtgg tgctcttcga gacgctggcc taccccaaga cgatcaccgg cggggacgag
3661 cccgcgatca acggggagat gcacctgatc gacctcatcc gcgccctcgg ggtgcacccc
3721 gaggagttcc cgcccgacac gcgcctccgg agcgagttcg tccggtacgc cgggacccac
3781 cgccagccgt acacgcagta cgcgcgcgtg gctcgcctcg ggctgcccga gacgggggct
3841 ttcctgattt acaagatgtt gacgtttgat cccgtccgcc gcccttccgc tgatgagata
3901 ctcaactttg gaatgtggac cgtataaaac gggccggctc cgagcggtag gacacacaca
3961 cctttgcgca tctccacagc tcaacaatga agtgggcaac gtggatcc
//