GenBank-Updates@genbank.bio.net (02/23/91)
LOCUS RSHA2 20 bp ss-RNA VRL 23-FEB-1991
DEFINITION Human respiratory syncytial virus (RSV), membrane-associated matrix
protein M-small hydrophobic protein 1A gene junction.
ACCESSION D00393
KEYWORDS 1A; M; consensus gene-end sequence; consensus gene-start sequence;
flanking region; intergenic region; membrane-associated matrix
protein; small hydrophobic protein.
SEGMENT 2 of 5
SOURCE A library of cDNA clones derived from RSV-subgroup B strain 18537-
infected cell mRNA, polycistronic cDNA clones, B75, X55, and mRNA.
ORGANISM Human respiratory syncytial virus
Viridae; ss-RNA enveloped viruses; Negative strand RNA viruses;
Paramyxoviridae; Pneumovirus.
REFERENCE 1 (bases 1 to 20)
AUTHORS Johnson,P.R. and Collins,P.L.
TITLE The A and B subgroups of human respiratory syncytial virus:
Comparison of intergenic and gene-overlap sequences
JOURNAL J. Gen. Virol. 69, 2901-2906 (1988)
STANDARD full staff_entry
COMMENT Intergenic and flanking gene regions of RSV subgroup B 18537 were
determined and compared with those of the subgroup A. Respiratory
syncytial virus is a negative-strand RNA pleomorphic enveloped
virus. The positive strand is shown below.
FEATURES Location/Qualifiers
misc_signal 1..9
/note="conserved gene-start sequence"
BASE COUNT 7 a 1 c 6 g 6 t
ORIGIN Conserved gene-start sequence for 1A.
1 ggggtaaata gacattagtt
//GenBank-Updates@genbank.bio.net (02/23/91)
LOCUS RSH22KL 93 bp ss-mRNA VRL 23-FEB-1991
DEFINITION Human respiratory syncytial virus (RSV), 22K protein-polymerase L
mRNA, overlap region.
ACCESSION D00397
KEYWORDS 22K protein; L protein; consensus gene-end sequence; consensus
gene-start sequence; overlap region; polymerase; untranslated
region.
SOURCE RSV-subgroup B strain 18537-infected cellular mRNA.
ORGANISM Human respiratory syncytial virus
Viridae; ss-RNA enveloped viruses; Negative strand RNA viruses;
Paramyxoviridae; Pneumovirus.
REFERENCE 1 (bases 1 to 93)
AUTHORS Johnson,P.R. and Collins,P.L.
TITLE The A and B subgroups of human respiratory syncytial virus:
Comparison of intergenic and gene-overlap sequences
JOURNAL J. Gen. Virol. 69, 2901-2906 (1988)
STANDARD full staff_entry
COMMENT Intergenic and flanking gene regions of RSV subgroup B 18537 were
determined and compared with those of the subgroup A.
FEATURES Location/Qualifiers
mRNA <1..93
/note="22K mRNA (3' untranslated region)"
mRNA 30..>93
/note="L mRNA"
misc_signal 30..38
/note="conserved gene-start sequence (mRNA-sense)"
CDS 38..>93
/note="L protein (amino terminus)"
/codon_start=38
misc_signal 86..93
/note="conserved gene-end sequence (mRNA-sense)"
BASE COUNT 35 a 17 c 14 g 27 t
ORIGIN 29 bp upstream of L mRNA start site.
1 caaccataaa acaaccttaa taaggttatg ggacaaaatg gatcccatta ttaatggaaa
61 ctctgccaat gtgtatctaa ctgatagtta tct
//GenBank-Updates@genbank.bio.net (02/23/91)
LOCUS RSHA5 96 bp ss-RNA VRL 23-FEB-1991
DEFINITION Human respiratory syncytial virus (RSV), fusion protein F-22K
protein gene junction.
ACCESSION D00396
KEYWORDS 22K protein; F protein; consensus gene-end sequence; consensus
gene-start sequence; flanking region; fusion protein; intergenic
region.
SEGMENT 5 of 5
SOURCE A library of cDNA clones derived from RSV-subgroup B strain 18537-
infected cell mRNAs, polycistronic cDNA clone, M32.
ORGANISM Human respiratory syncytial virus
Viridae; ss-RNA enveloped viruses; Negative strand RNA viruses;
Paramyxoviridae; Pneumovirus.
REFERENCE 1 (bases 1 to 96)
AUTHORS Johnson,P.R. and Collins,P.L.
TITLE The A and B subgroups of human respiratory syncytial virus:
Comparison of intergenic and gene-overlap sequences
JOURNAL J. Gen. Virol. 69, 2901-2906 (1988)
STANDARD full staff_entry
COMMENT Intergenic and flanking gene regions of RSV subgroup B 18537 were
determined and compared with those of the subgroup A. mRNA sense
is
shown below.
FEATURES Location/Qualifiers
misc_signal 9..20
/note="conserved gene-end sequence"
misc_RNA 21..76
/note="F-22K intergenic region"
CDS 86..>96
/note="22K protein (amino terminus)"
/codon_start=86
BASE COUNT 42 a 24 c 11 g 19 t
ORIGIN 8 bp upstream of gene-end sequence for F.
1 caactcatag ttacataaaa ccccaagtat cacaatcaaa cactaaatcg acacatcatt
61 cacaaaatta acaactgggg caaatatgtc gcgaag
//GenBank-Updates@genbank.bio.net (02/23/91)
LOCUS RSHA4 20 bp ss-RNA VRL 23-FEB-1991
DEFINITION Human respiratory syncytial virus (RSV), attachment glycoprotein G-
fusion protein F gene junction.
ACCESSION D00395
KEYWORDS F protein; G protein; attachment glycoprotein; consensus gene-end
sequence; consensus gene-start sequence; flanking region; fusion
protein; intergenic region.
SEGMENT 4 of 5
SOURCE RSV-subgroup B strain 18537-infected cellular mRNA.
ORGANISM Human respiratory syncytial virus
Viridae; ss-RNA enveloped viruses; Negative strand RNA viruses;
Paramyxoviridae; Pneumovirus.
REFERENCE 1 (bases 1 to 20)
AUTHORS Johnson,P.R. and Collins,P.L.
TITLE The A and B subgroups of human respiratory syncytial virus:
Comparison of intergenic and gene-overlap sequences
JOURNAL J. Gen. Virol. 69, 2901-2906 (1988)
STANDARD full staff_entry
COMMENT Intergenic and flanking gene regions of RSV subgroup B 18537 were
determined and compared with those of the subgroup A. mRNA sense
is
shown below.
FEATURES Location/Qualifiers
misc_signal 1..9
/note="conserved gene-start sequence"
BASE COUNT 6 a 2 c 5 g 3 t 4 others
ORIGIN Conserved gene-start sequence for F.
1 nnggnnaata accatggagt
//GenBank-Updates@genbank.bio.net (02/23/91)
LOCUS RSHA3 72 bp ss-RNA VRL 23-FEB-1991
DEFINITION Human respiratory syncytial virus (RSV), attachment glycoprotein G-
fusion protein F gene junction.
ACCESSION D00394
KEYWORDS F protein; G protein; attachment glycoprotein; consensus gene-end
sequence; consensus gene-start sequence; flanking region; fusion
protein; intergenic region.
SEGMENT 3 of 5
SOURCE RSV-subgroup B strain 18537-infected cellular mRNA.
ORGANISM Human respiratory syncytial virus
Viridae; ss-RNA enveloped viruses; Negative strand RNA viruses;
Paramyxoviridae; Pneumovirus.
REFERENCE 1 (bases 1 to 72)
AUTHORS Johnson,P.R. and Collins,P.L.
TITLE The A and B subgroups of human respiratory syncytial virus:
Comparison of intergenic and gene-overlap sequences
JOURNAL J. Gen. Virol. 69, 2901-2906 (1988)
STANDARD full staff_entry
COMMENT Intergenic and flanking gene regions of RSV subgroup B 18537 were
determined and compared with those of the subgroup A. mRNA sense
is
shown in below.
FEATURES Location/Qualifiers
misc_signal 8..20
/note="conserved gene-end sequence"
misc_RNA 21..>72
/note="G-F intergenic region"
BASE COUNT 30 a 13 c 9 g 18 t 2 others
ORIGIN 7 bp upstream of conserved gene-start sequence for G.
1 catgcttagt tattcaaaaa ctacatctta gtagagaacc gtgatctatc aagcaagaac
61 aaaattnaac an
//GenBank-Updates@genbank.bio.net (02/23/91)
LOCUS RSHA1 28 bp ss-RNA VRL 23-FEB-1991
DEFINITION Human respiratory syncytial virus (RSV), membrane-associated matrix
protein M- small hydrophobic protein 1A gene junction.
ACCESSION D00392
KEYWORDS consensus gene-end sequence; consensus gene-start sequence;
flanking region; intergenic region; membrane-associated matrix
protein; small hydrophobic protein.
SEGMENT 1 of 5
SOURCE A library of cDNA clones derived from RSV-subgroup B strain 18537-
infected cell mRNAs, polycistronic cDNA clones, B75, X55, and mRNA.
ORGANISM Human respiratory syncytial virus
Viridae; ss-RNA enveloped viruses; Negative strand RNA viruses;
Paramyxoviridae; Pneumovirus.
REFERENCE 1 (bases 1 to 28)
AUTHORS Johnson,P.R. and Collins,P.L.
TITLE The A and B subgroups of human respiratory syncytial virus:
Comparison of intergenic and gene-overlap sequences
JOURNAL J. Gen. Virol. 69, 2901-2906 (1988)
STANDARD full staff_entry
COMMENT Intergenic and flanking gene regions of RSV subgroup B 18537 were
determined and compared with those of the subgroup A. Respiratory
syncytial virus is a negative-strand RNA pleomorphic enveloped
virus. Ths positive strand is shown below.
FEATURES Location/Qualifiers
misc_signal 8..19
/note="conserved gene-end sequence"
misc_RNA 20..>28
/note="M-1A intergenic region"
BASE COUNT 15 a 3 c 4 g 6 t
ORIGIN 7 bp upstream of conserved gene-end sequence for M.
1 tgcgaatagg taaataaaac caaaatat
//