GenBank-Updates@genbank.bio.net (02/22/91)
LOCUS BVDCP1 5688 bp ss-RNA VRL 22-FEB-1991
DEFINITION Bovine viral diarrhea virus CP1 putative helcase/protease mRNA,
partial cds.
ACCESSION M62431 M37795
KEYWORDS helicase; nonstructural protein; protease.
SOURCE Bovine viral diarrhea virus, cDNA to viral RNA.
ORGANISM Bovine viral diarrhea virus
Viridae; ss-RNA enveloped viruses; Pestiviridae.
REFERENCE 1 (bases 1 to 5688)
AUTHORS Meyers,G., Tautz,N., Dubovi,E.J. and Thiel,H.-J.
TITLE Viral cytopathogenicity correlated with integration of
Ubiquitin-Coding sequences
JOURNAL Virology 180, 602-616 (1991)
STANDARD simple staff_entry
FEATURES Location/Qualifiers
CDS <1..>5689
/note="nonstructural protein; putative helicase/protease;
contains duplication; contains ubiquitin-coding region"
/codon_start=1
CDS 2830..3195
/note="ubiquitin-coding region"
/codon_start=2830
/partial
BASE COUNT 1831 a 1165 c 1485 g 1207 t
ORIGIN
1 aacctaataa taaaacacaa agtaagaaat gagaccgtga ttggttggta cggagaggag
61 gaagtctatg gcatgccaag gatcatgact ataatcaagg ctagtacgct gaataagaac
121 aagcactgta taatatgcac tgtatgtgaa ggccgaaagt ggaaaggtgg tacctgccca
181 aaatgtggac gccatgggaa acccataacg tgtgggatgt cactggcaga ttttgaagaa
241 aggcattata aaaggatctt cataagggag ggcaacttcg agggcccgtt cagacaagaa
301 tataaaggct tagtccaata taccgccagg gggcaattgt tcctaagaaa cttgcccata
361 ctggcaacaa aagtaaaaat gcttatggtg ggtaaccttg gagaagaaat tggggaccta
421 gaacaccttg gttggatcct aagggggcct gccgtgtgta agaagatcac agaacacgaa
481 agatgccatg tcaacatatt agataaacta actgcatttc ttgggatcat gccaagaggg
541 accacaccca gacccccagt gaggtttcct acgagtttgt taaaagtgag gaggggtctg
601 gagactggtt gggcttatac acaccaaggt gggataagtt cagtagacca tgtaaccgct
661 ggcaaagatc tattggtctg tgacagtatg ggaagaacta gagtggtctg ccagagcaac
721 aataagttaa ctgatgagac agagtatggt gtcaagactg actcaggatg cccagatggt
781 gccagatgtt acgtgctaaa tccagaggca gtcaacatat cgggttctaa aggggcagtc
841 gtccacctcc aaaagacagg acgggaattc acgtgtgtca ccgcatcagg cacaccggct
901 ttctttgatc taaaaaactt gaagggatgg tcgggcctac ctatttttga agcctccagc
961 ggaagggtgg ttggtagagt taaggtgggg aagaatgaag agtccaaacc cacgaagata
1021 atgagtggca tccagaccgt ctcaaagaat acagcagatc tgactgagat ggtcaagaag
1081 attactagta tgaacagggg agatttcaag cagataacat tagcaacagg agcaggaaaa
1141 accacagaac ttccaaaggc agtgatagag gagataggaa gacataagcg agtgctggtc
1201 cttataccat tgagggcagc agcagactca gtctaccagt atatgagatt gaaacacccg
1261 agcatctctt ttaacctaag gataggggat atgaaggaag gggacatggc aactgggata
1321 acctatgcat catacggata cttctgtcag atgcctcaac caaagcttag agcagctatg
1381 gttgaatact catacatatt cttagatgaa taccactgcg ccactcctga acagttggca
1441 atcatcggaa aaatccacag attttcagag agtataagag tggttgccat gactgctacc
1501 ccagcagggt cggtaaccac aacaggacag aagcacccaa tagaggaatt tatagccccc
1561 gaggtgatga aaggggaaga tctaggcagt cagttccttg atatagcggg gctaaaaatc
1621 cccgtggatg agatgaaagg taacatgttg gtttttgtgc ccacgagaaa catggcagtt
1681 gaagtggcta agaagctaaa agctaagggc tacaattctg ggtactatta cagcggagag
1741 gatccagcta atttgagagt tgtaacatca cagtccccct atgtaattgt ggccacaaat
1801 gccattgaat caggagtgac attaccagac ttggatacag tcgtggatac agggctgaaa
1861 tgtgaaaaga gggtgagggt atcatcaaag ataccattca ttgtaacagg ccttaagagg
1921 atggcagtaa ctgtgggtga acaggcccaa cgaaggggca gagtaggtag agtgaaaccc
1981 gggagatatt acaggagcca agaaacggca acagggtcaa aggactatca ctatgacctc
2041 ttgcaggcac aaaggtacgg tattgaggat ggaatcaacg taacaaaatc cttcagggaa
2101 atgaattacg attggagtct atatgaggag gacagcctgc taataaccca gttagaaata
2161 ttaaataact tactcatatc agaagacttg ccagccgccg ttaagaatat aatggccagg
2221 actgatcacc cagaaccgat ccaacttgca tacaacagct acgaggtcca ggtcccagtc
2281 ctgttcccaa aaataaggaa tggagaagtc acagacacct atgaaaacta ctcatttcta
2341 aacgctagaa aattaggaga ggatgtgcct gtttacatct atgccactga agatgaggac
2401 ctggcagttg acctactagg actagactgg cccgatcctg ggaaccaaca ggtcgtggaa
2461 actggtaaag cactgaaaca agtggccggg ttgtcctcag ctgagaatgc cctgctcgta
2521 gctttatttg ggtatgtagg ttaccaggct ctatcaaaga ggcatgtccc aatgatcaca
2581 gatatatata ccatagagga ccagaggcta gaagacacca cccacctcca gtatgcaccc
2641 aacgccataa aaactgaggg gacagaaact gagctaaaag aattggcgtc gggtgacgtg
2701 gaaaaaataa tgggggccat ctcagattat gcagctgggg gactggattt cgtaaaatct
2761 caagcagaaa agataagaac aacccctttg tttaaggaaa atgtagaagc tgcaaagggg
2821 tatgtccacc aggataagga aggcattccc cctgaccagc agaggctcat ctttgccggc
2881 aagcagctgg aagatggccg cactctttct gattacaaca tccagaaaga gtcgaccctg
2941 cacctggtcc tccgtctgag gggtggtatg cagatcttcg tgaagaccct gaccggcaag
3001 accatcaccc tggaagtgga gcccagtgac accatcgaga acgtgaaggc caagatccag
3061 gataaggaag gcattccccc tgaccagcag aggctcatct ttgccggcaa gcagctggaa
3121 gatggccgca ctctttctga ttacaacatc cagaaagagt cgaccctgca cctggtcctt
3181 cgtctgaggg gtggcgggcc tgccgtgtgt aagaagatca cagaacacga aagatgccat
3241 gtcaacatat tagataaact aactgcattt tttgggatca tgccaagagg gaccacaccc
3301 agagccccag tgaggtttcc tacgagtttg ttaaaagtga ggaggggtct ggagactggt
3361 tgggcttata cacaccaagg tgggataagt tcagtagacc atgtaaccgc tggcaaagat
3421 ctattggtct gtgacagtat gggaagaact agagtggtct gccagagcaa caataagtta
3481 actgatgaga cagagtatgg tgtcaagact gactcaggat gcccagatgg tgccagatgt
3541 tacgtgctga acccagaggc agtcaacata tcgggttcta aaggggcagt cgtccacctc
3601 cagaagacag gcggggaatt cacgtgtgtc accgcatcag gcacaccggc tttctttgat
3661 ctaaaaaact tgaagggatg gtcgggccta cctatttttg aagcctccag cggaagggtg
3721 gttggtagag ttaaggtggg gaagaatgaa gagtccaaac ccacgaagat aatgagtggc
3781 atccagaccg tctcaaagaa tacagcagat ctgactgaga tggtcaagaa gattactagt
3841 atgaacaggg gagatttcaa gcagataaca ttagcaacag gagcaggaaa aaccacagaa
3901 cttccaaagg cagtgataga ggagatagga agacacaagc gagtgctggt ccttatacca
3961 ttgagggcag cagcagagtc agtctaccag tatatgagat tgaaacaccc gagcatctct
4021 tttaacctaa ggatagggga tatgaaggaa ggggacatgg caactgggat aacctatgca
4081 tcatacggat acttctgtca gatgcctcaa ccaaagctta gagcagctat ggttgaatac
4141 tcatacatat tcttagatga ataccactgc gccactcctg aacagttggc aatcatcgga
4201 aaaatccaca gattttcaga gagtataaga gtggttgcca tgactgctac cccagcaggg
4261 tcggtaacca caacaggaca gaagcaccca atagaggaat ttatagcccc cgaggtgatg
4321 aaaggggaag atctaggcag tcagttcctt gatatagcgg ggctaaaaat ccccgtggat
4381 gagatgaaag gtaacatgtt ggtttttgtg cccacgagaa acatggcagt tgaagtggct
4441 aagaagctaa aagctaaggg ctacaattct gggtactatt acagcggaga ggatccagct
4501 aatttgagag ttgtaacatc acagtccccc tatgtaattg tggccacaaa tgccattgaa
4561 tcaggagtga cattaccaga cttggataca gtcgtggata cagggctgaa atgtgaaaag
4621 agggtgaggg tatcatcaaa gataccattc attgtaacag gccttaagag gatggctgta
4681 actgtgggtg aacaggccca acgaaggggc agagtaggta gagtgaaacc cgggagatat
4741 tacaggagcc aagaaacggc aacagggtca aaggactatc actatgacct cttgcaggca
4801 caaaggtacg gtattgagga tggaatcaac gtaacaaaat ccttcaggga aatgaattac
4861 gattggagtc tatatgagga ggacagcctg ctaataaccc agttagaaat attaaataac
4921 ttactcatat cagaagactt gccagctgcc gttaagaata taatggccag gactgatcac
4981 ccagaaccga tccaacttgc atacaacagc tacgaggtcc aggtcccagt cctgttccca
5041 aaaataagga atggagaagt cacagacacc tatgaaaact actcatttct aaacgctaga
5101 aaattaggag aggatgtgcc tgtttacatc tatgccactg aagatgagga cctggcagtt
5161 gacctactag ggctagactg gcccgatcct gggaaccaac aggtcgtgga aactggtaaa
5221 gcactgaaac aagtggccgg gttgtcctca gctgagaatg ccctgctcgt agctttattt
5281 gggtatgtag gttaccaggc tctatcaaag aggcatgtcc caatgatcac agatatatat
5341 accatagagg accagaggct agaagacacc acccacctcc agtatgcacc caacgccata
5401 aaaactgagg ggacagaaac tgagctaaaa gaattggcgt cgggtgacgt ggaaaaaata
5461 atgggggcca tctcagatta tgcagctggg ggactggatt tcgtaaaatc tcaagccgaa
5521 aagataagaa caaccccttt gtttaaggaa aatgtagaag ctgcaaaggg gtatgtccaa
5581 aaattcattg actcattaat agaagataaa gatgtaataa ttagatatgg cttatgggga
5641 acacatacag cgctctataa aagcatagct gcaagattgg ggcatgaa
//GenBank-Updates@genbank.bio.net (02/27/91)
LOCUS BVDCP1 5688 bp ss-RNA VRL 27-FEB-1991
DEFINITION Bovine viral diarrhea virus CP1 putative helcase/protease mRNA,
partial cds.
ACCESSION M62431 M37795
KEYWORDS helicase; nonstructural protein; protease.
SOURCE Bovine viral diarrhea virus, cDNA to viral RNA.
ORGANISM Bovine viral diarrhea virus
Viridae; ss-RNA enveloped viruses; Pestiviridae.
REFERENCE 1 (bases 1 to 5688)
AUTHORS Meyers,G., Tautz,N., Dubovi,E.J. and Thiel,H.-J.
TITLE Viral cytopathogenicity correlated with integration of
Ubiquitin-Coding sequences
JOURNAL Virology 180, 602-616 (1991)
STANDARD simple staff_entry
FEATURES Location/Qualifiers
CDS <1..>5688
/note="nonstructural protein; putative helicase/protease;
contains duplication; contains ubiquitin-coding region"
/codon_start=1
CDS 2830..3195
/note="ubiquitin-coding region"
/codon_start=2830
/partial
BASE COUNT 1831 a 1165 c 1485 g 1207 t
ORIGIN
1 aacctaataa taaaacacaa agtaagaaat gagaccgtga ttggttggta cggagaggag
61 gaagtctatg gcatgccaag gatcatgact ataatcaagg ctagtacgct gaataagaac
121 aagcactgta taatatgcac tgtatgtgaa ggccgaaagt ggaaaggtgg tacctgccca
181 aaatgtggac gccatgggaa acccataacg tgtgggatgt cactggcaga ttttgaagaa
241 aggcattata aaaggatctt cataagggag ggcaacttcg agggcccgtt cagacaagaa
301 tataaaggct tagtccaata taccgccagg gggcaattgt tcctaagaaa cttgcccata
361 ctggcaacaa aagtaaaaat gcttatggtg ggtaaccttg gagaagaaat tggggaccta
421 gaacaccttg gttggatcct aagggggcct gccgtgtgta agaagatcac agaacacgaa
481 agatgccatg tcaacatatt agataaacta actgcatttc ttgggatcat gccaagaggg
541 accacaccca gacccccagt gaggtttcct acgagtttgt taaaagtgag gaggggtctg
601 gagactggtt gggcttatac acaccaaggt gggataagtt cagtagacca tgtaaccgct
661 ggcaaagatc tattggtctg tgacagtatg ggaagaacta gagtggtctg ccagagcaac
721 aataagttaa ctgatgagac agagtatggt gtcaagactg actcaggatg cccagatggt
781 gccagatgtt acgtgctaaa tccagaggca gtcaacatat cgggttctaa aggggcagtc
841 gtccacctcc aaaagacagg acgggaattc acgtgtgtca ccgcatcagg cacaccggct
901 ttctttgatc taaaaaactt gaagggatgg tcgggcctac ctatttttga agcctccagc
961 ggaagggtgg ttggtagagt taaggtgggg aagaatgaag agtccaaacc cacgaagata
1021 atgagtggca tccagaccgt ctcaaagaat acagcagatc tgactgagat ggtcaagaag
1081 attactagta tgaacagggg agatttcaag cagataacat tagcaacagg agcaggaaaa
1141 accacagaac ttccaaaggc agtgatagag gagataggaa gacataagcg agtgctggtc
1201 cttataccat tgagggcagc agcagactca gtctaccagt atatgagatt gaaacacccg
1261 agcatctctt ttaacctaag gataggggat atgaaggaag gggacatggc aactgggata
1321 acctatgcat catacggata cttctgtcag atgcctcaac caaagcttag agcagctatg
1381 gttgaatact catacatatt cttagatgaa taccactgcg ccactcctga acagttggca
1441 atcatcggaa aaatccacag attttcagag agtataagag tggttgccat gactgctacc
1501 ccagcagggt cggtaaccac aacaggacag aagcacccaa tagaggaatt tatagccccc
1561 gaggtgatga aaggggaaga tctaggcagt cagttccttg atatagcggg gctaaaaatc
1621 cccgtggatg agatgaaagg taacatgttg gtttttgtgc ccacgagaaa catggcagtt
1681 gaagtggcta agaagctaaa agctaagggc tacaattctg ggtactatta cagcggagag
1741 gatccagcta atttgagagt tgtaacatca cagtccccct atgtaattgt ggccacaaat
1801 gccattgaat caggagtgac attaccagac ttggatacag tcgtggatac agggctgaaa
1861 tgtgaaaaga gggtgagggt atcatcaaag ataccattca ttgtaacagg ccttaagagg
1921 atggcagtaa ctgtgggtga acaggcccaa cgaaggggca gagtaggtag agtgaaaccc
1981 gggagatatt acaggagcca agaaacggca acagggtcaa aggactatca ctatgacctc
2041 ttgcaggcac aaaggtacgg tattgaggat ggaatcaacg taacaaaatc cttcagggaa
2101 atgaattacg attggagtct atatgaggag gacagcctgc taataaccca gttagaaata
2161 ttaaataact tactcatatc agaagacttg ccagccgccg ttaagaatat aatggccagg
2221 actgatcacc cagaaccgat ccaacttgca tacaacagct acgaggtcca ggtcccagtc
2281 ctgttcccaa aaataaggaa tggagaagtc acagacacct atgaaaacta ctcatttcta
2341 aacgctagaa aattaggaga ggatgtgcct gtttacatct atgccactga agatgaggac
2401 ctggcagttg acctactagg actagactgg cccgatcctg ggaaccaaca ggtcgtggaa
2461 actggtaaag cactgaaaca agtggccggg ttgtcctcag ctgagaatgc cctgctcgta
2521 gctttatttg ggtatgtagg ttaccaggct ctatcaaaga ggcatgtccc aatgatcaca
2581 gatatatata ccatagagga ccagaggcta gaagacacca cccacctcca gtatgcaccc
2641 aacgccataa aaactgaggg gacagaaact gagctaaaag aattggcgtc gggtgacgtg
2701 gaaaaaataa tgggggccat ctcagattat gcagctgggg gactggattt cgtaaaatct
2761 caagcagaaa agataagaac aacccctttg tttaaggaaa atgtagaagc tgcaaagggg
2821 tatgtccacc aggataagga aggcattccc cctgaccagc agaggctcat ctttgccggc
2881 aagcagctgg aagatggccg cactctttct gattacaaca tccagaaaga gtcgaccctg
2941 cacctggtcc tccgtctgag gggtggtatg cagatcttcg tgaagaccct gaccggcaag
3001 accatcaccc tggaagtgga gcccagtgac accatcgaga acgtgaaggc caagatccag
3061 gataaggaag gcattccccc tgaccagcag aggctcatct ttgccggcaa gcagctggaa
3121 gatggccgca ctctttctga ttacaacatc cagaaagagt cgaccctgca cctggtcctt
3181 cgtctgaggg gtggcgggcc tgccgtgtgt aagaagatca cagaacacga aagatgccat
3241 gtcaacatat tagataaact aactgcattt tttgggatca tgccaagagg gaccacaccc
3301 agagccccag tgaggtttcc tacgagtttg ttaaaagtga ggaggggtct ggagactggt
3361 tgggcttata cacaccaagg tgggataagt tcagtagacc atgtaaccgc tggcaaagat
3421 ctattggtct gtgacagtat gggaagaact agagtggtct gccagagcaa caataagtta
3481 actgatgaga cagagtatgg tgtcaagact gactcaggat gcccagatgg tgccagatgt
3541 tacgtgctga acccagaggc agtcaacata tcgggttcta aaggggcagt cgtccacctc
3601 cagaagacag gcggggaatt cacgtgtgtc accgcatcag gcacaccggc tttctttgat
3661 ctaaaaaact tgaagggatg gtcgggccta cctatttttg aagcctccag cggaagggtg
3721 gttggtagag ttaaggtggg gaagaatgaa gagtccaaac ccacgaagat aatgagtggc
3781 atccagaccg tctcaaagaa tacagcagat ctgactgaga tggtcaagaa gattactagt
3841 atgaacaggg gagatttcaa gcagataaca ttagcaacag gagcaggaaa aaccacagaa
3901 cttccaaagg cagtgataga ggagatagga agacacaagc gagtgctggt ccttatacca
3961 ttgagggcag cagcagagtc agtctaccag tatatgagat tgaaacaccc gagcatctct
4021 tttaacctaa ggatagggga tatgaaggaa ggggacatgg caactgggat aacctatgca
4081 tcatacggat acttctgtca gatgcctcaa ccaaagctta gagcagctat ggttgaatac
4141 tcatacatat tcttagatga ataccactgc gccactcctg aacagttggc aatcatcgga
4201 aaaatccaca gattttcaga gagtataaga gtggttgcca tgactgctac cccagcaggg
4261 tcggtaacca caacaggaca gaagcaccca atagaggaat ttatagcccc cgaggtgatg
4321 aaaggggaag atctaggcag tcagttcctt gatatagcgg ggctaaaaat ccccgtggat
4381 gagatgaaag gtaacatgtt ggtttttgtg cccacgagaa acatggcagt tgaagtggct
4441 aagaagctaa aagctaaggg ctacaattct gggtactatt acagcggaga ggatccagct
4501 aatttgagag ttgtaacatc acagtccccc tatgtaattg tggccacaaa tgccattgaa
4561 tcaggagtga cattaccaga cttggataca gtcgtggata cagggctgaa atgtgaaaag
4621 agggtgaggg tatcatcaaa gataccattc attgtaacag gccttaagag gatggctgta
4681 actgtgggtg aacaggccca acgaaggggc agagtaggta gagtgaaacc cgggagatat
4741 tacaggagcc aagaaacggc aacagggtca aaggactatc actatgacct cttgcaggca
4801 caaaggtacg gtattgagga tggaatcaac gtaacaaaat ccttcaggga aatgaattac
4861 gattggagtc tatatgagga ggacagcctg ctaataaccc agttagaaat attaaataac
4921 ttactcatat cagaagactt gccagctgcc gttaagaata taatggccag gactgatcac
4981 ccagaaccga tccaacttgc atacaacagc tacgaggtcc aggtcccagt cctgttccca
5041 aaaataagga atggagaagt cacagacacc tatgaaaact actcatttct aaacgctaga
5101 aaattaggag aggatgtgcc tgtttacatc tatgccactg aagatgagga cctggcagtt
5161 gacctactag ggctagactg gcccgatcct gggaaccaac aggtcgtgga aactggtaaa
5221 gcactgaaac aagtggccgg gttgtcctca gctgagaatg ccctgctcgt agctttattt
5281 gggtatgtag gttaccaggc tctatcaaag aggcatgtcc caatgatcac agatatatat
5341 accatagagg accagaggct agaagacacc acccacctcc agtatgcacc caacgccata
5401 aaaactgagg ggacagaaac tgagctaaaa gaattggcgt cgggtgacgt ggaaaaaata
5461 atgggggcca tctcagatta tgcagctggg ggactggatt tcgtaaaatc tcaagccgaa
5521 aagataagaa caaccccttt gtttaaggaa aatgtagaag ctgcaaaggg gtatgtccaa
5581 aaattcattg actcattaat agaagataaa gatgtaataa ttagatatgg cttatgggga
5641 acacatacag cgctctataa aagcatagct gcaagattgg ggcatgaa
//