GenBank-Updates@genbank.bio.net (03/02/91)
LOCUS PLYJCSS 187 bp ds-DNA VRL 02-MAR-1991
DEFINITION Polyomavirus JC regulatory region DNA.
ACCESSION D90246
KEYWORDS regulatory region.
SOURCE Polyomavirus JC SS/cl131, from immunosuppressed patient urine,
viral DNA.
ORGANISM Polyomavirus JC
Viridae; ds-DNA nonenveloped viruses; Papovaviridae;
Polyomaviruses.
REFERENCE 1 (bases 1 to 187)
AUTHORS Yogo,Y., Kitamura,T., Sugimoto,C., Hara,K., Iida,T., Taguchi,F.,
Tajima,A., Kawabe,K. and Aso,Y.
TITLE Sequence rearrangement in JC virus DNAs molecularly cloned from
renal transplant patients undergoing immunosuppression
JOURNAL Unpublished (1991)
STANDARD full staff_entry
COMMENT These data kindly submitted in computer readable form by:
Yoshiaki Yogo
The Institute of Medical Science
The University of Tokyo
4-6-1 Shirokanedai
Minato-ku, Tokyo 108
Japan
Phone: 03-3443-8111 x287
Fax: 03-3443-9609
FEATURES Location/Qualifiers
CDS complement(<1..3)
/note="T antigen"
rep_origin 175..187
/note="origin of replication"
BASE COUNT 62 a 43 c 39 g 43 t
ORIGIN 0.645-0.664 map unit.
1 catttttgct ttttgtagca aaaaattagt gcaaaaaagg gaaaaaggga atttccctgg
61 cctcctaaaa agcctccacg cccttactaa aattagtgca aaaaagggaa aaacaaggga
121 atttccctgg cctcctaaaa agcctccacg cccttactac ttctgagtaa gcttggaggc
181 ggaggcg
//GenBank-Updates@genbank.bio.net (03/02/91)
LOCUS PLYJC 219 bp ds-DNA VRL 02-MAR-1991
DEFINITION Polyomavirus JC regulatory region DNA.
ACCESSION D90249
KEYWORDS regulatory region.
SOURCE Polyomavirus JC, from immunosuppressed patient urine, viral DNA.
ORGANISM Polyomavirus JC
Viridae; ds-DNA nonenveloped viruses; Papovaviridae;
Polyomaviruses.
REFERENCE 1 (bases 1 to 219)
AUTHORS Yogo,Y., Kitamura,T., Sugimoto,C., Hara,K., Iida,T., Taguchi,F.,
Tajima,A., Kawabe,K. and Aso,Y.
TITLE Sequence rearrangement in JC virus DNAs molecularly cloned from
renal transplant patients undergoing immunosuppression
JOURNAL Unpublished (1991)
STANDARD full staff_entry
COMMENT These data kindly submitted in computer readable form by:
Yoshiaki Yogo
The Institute of Medical Science
The University of Tokyo
4-6-1 Shirokanedai
Minato-ku, Tokyo 108
Japan
Phone: 03-3443-8111 x287
Fax: 03-3443-9609
FEATURES Location/Qualifiers
rep_origin 1..12
/note="origin of replication"
misc_signal 15..29
/note="TATA sequence"
CDS 217..>219
/note="agnoprotein"
BASE COUNT 60 a 52 c 70 g 37 t
ORIGIN 0.664-0.721 map unit.
1 gcctcggcct cctgtatata taaaaaaaag ggaaggtagg gaggagctgg ctaaaactgg
61 atggctgcca gccaagcatg agctcatacc tagggagcca accagctgac agccagaggg
121 agccctggct gcatgccaag cacaagggga agtggaaagc agccagggga acatgttttg
181 cgagccagag ctgttttggc ttgtcaccag ctggccatg
//GenBank-Updates@genbank.bio.net (03/02/91)
LOCUS PLYJCNY 211 bp ds-DNA VRL 02-MAR-1991
DEFINITION Polyomavirus JC regulatory region DNA.
ACCESSION D90248
KEYWORDS regulatory region.
SOURCE Polyomavirus JC NY/cl70, from immunosuppressed patient urine, viral
DNA.
ORGANISM Polyomavirus JC
Viridae; ds-DNA nonenveloped viruses; Papovaviridae;
Polyomaviruses.
REFERENCE 1 (bases 1 to 211)
AUTHORS Yogo,Y., Kitamura,T., Sugimoto,C., Hara,K., Iida,T., Taguchi,F.,
Tajima,A., Kawabe,K. and Aso,Y.
TITLE Sequence rearrangement in JC virus DNAs molecularly cloned from
renal transplant patients undergoing immunosuppression
JOURNAL Unpublished (1991)
STANDARD full staff_entry
COMMENT These data kindly submitted in computer readable form by:
Yoshiaki Yogo
The Institute of Medical Science
The University of Tokyo
4-6-1 Shirokanedai
Minato-ku, Tokyo 108
Japan
Phone: 03-3443-8111 x287
Fax: 03-3443-9609
FEATURES Location/Qualifiers
rep_origin 1..12
/note="origin of replication"
misc_signal 15..29
/note="TATA sequence"
CDS 209..>211
/note="agnoprotein"
BASE COUNT 60 a 49 c 67 g 35 t
ORIGIN 0.664-0.721 map unit.
1 gcctcggcct cctgtatata taaaaaaaag ggaaggtagg gaggagctgg ctaaaactgg
61 atggctgcca gccaagcatg agctcatacc tagggagcca accagctgac agccagaggg
121 agccctggca acaaagcagg gaagtggaaa gcagccaggg gaacatgttt tgcgagccag
181 agctgttttg gcttgtcacc agctggccat g
//GenBank-Updates@genbank.bio.net (03/02/91)
LOCUS PLYJCFO 256 bp ds-DNA VRL 02-MAR-1991
DEFINITION Polyomavirus JC regulatory region DNA.
ACCESSION D90250
KEYWORDS regulatory region.
SOURCE Polyomavirus JC FO/pcr37, from immunosuppressed patient urine,
viral DNA.
ORGANISM Polyomavirus JC
Viridae; ds-DNA nonenveloped viruses; Papovaviridae;
Polyomaviruses.
REFERENCE 1 (bases 1 to 256)
AUTHORS Yogo,Y., Kitamura,T., Sugimoto,C., Hara,K., Iida,T., Taguchi,F.,
Tajima,A., Kawabe,K. and Aso,Y.
TITLE Sequence rearrangement in JC virus DNAs molecularly cloned from
renal transplant patients undergoing immunosuppression
JOURNAL Unpublished (1991)
STANDARD full staff_entry
COMMENT These data kindly submitted in computer readable form by:
Yoshiaki Yogo
The Institute of Medical Science
The University of Tokyo
4-6-1 Shirokanedai
Minato-ku, Tokyo 108
Japan
Phone: 03-3443-8111 x287
Fax: 03-3443-9609
FEATURES Location/Qualifiers
rep_origin 1..12
/note="origin of replication"
misc_signal 15..29
/note="TATA sequence"
CDS 254..>256
/note="agnoprotein"
BASE COUNT 74 a 64 c 72 g 46 t
ORIGIN 0.664-0.721 map unit.
1 gcctcggcct cctgtatata taaaaaaaag ggaaggtagg gaggagctgg ctgccagcca
61 agcatgagct catacctagg gagccaacca gctaacagcc agagggagcc ctggctgcat
121 gccactggca gttatagtga aacccctccc atagtcctta atcacaagta aacaaagcac
181 aaggggaagt ggaaagcagc caggggaaca tgttttgcga gccagagctg ttttggcttg
241 tcaccagctg gccatg
//GenBank-Updates@genbank.bio.net (03/02/91)
LOCUS PLYJCKA 278 bp ds-DNA VRL 02-MAR-1991
DEFINITION Polyomavirus JC regulatory region DNA.
ACCESSION D90247
KEYWORDS regulatory region.
SOURCE Polyomavirus JC KA/cl28, from immunosuppressed patient urine, viral
DNA.
ORGANISM Polyomavirus JC
Viridae; ds-DNA nonenveloped viruses; Papovaviridae;
Polyomaviruses.
REFERENCE 1 (bases 1 to 278)
AUTHORS Yogo,Y., Kitamura,T., Sugimoto,C., Hara,K., Iida,T., Taguchi,F.,
Tajima,A., Kawabe,K. and Aso,Y.
TITLE Sequence rearrangement in JC virus DNAs molecularly cloned from
renal transplant patients undergoing immunosuppression
JOURNAL Unpublished (1991)
STANDARD full staff_entry
COMMENT These data kindly submitted in computer readable form by:
Yoshiaki Yogo
The Institute of Medical Science
The University of Tokyo
4-6-1 Shirokanedai
Minato-ku, Tokyo 108
Japan
Phone: 03-3443-8111 x287
Fax: 03-3443-9609
FEATURES Location/Qualifiers
rep_origin 1..12
/note="origin of replication"
misc_signal 15..29
/note="TATA sequence"
CDS 276..>278
/note="agnoprotein"
BASE COUNT 84 a 67 c 76 g 51 t
ORIGIN 0.664-0.721 map unit.
1 gcctcggcct cctgtatata taaaaaaaag ggaaggtagg gaggagctgg ctaaaactgg
61 atggctgcca gccaagcatg agctcatacc tagggagcca accagcagac agccagaggg
121 agccctggct gcatgccact ggcagttata gtgaaaccac tcccatagtc cttaatcact
181 taatcacaag taaacaaagc acaaggggaa gtggaaagca gccaagggaa catgttttgc
241 gagccagagc tgttttggct tgtcaccagc tggccatg
//GenBank-Updates@genbank.bio.net (03/02/91)
LOCUS PLYJCCY 390 bp ds-DNA VRL 02-MAR-1991
DEFINITION Polyomavirus JC regulatory region DNA.
ACCESSION D90245
KEYWORDS regulatory region.
SOURCE Polyomavirus JC CY/cl1, from healthy individual urine, viral DNA.
ORGANISM Polyomavirus JC
Viridae; ds-DNA nonenveloped viruses; Papovaviridae;
Polyomaviruses.
REFERENCE 1 (sites)
AUTHORS Yogo,Y.
TITLE Isolation of a possible archetypal JC virus DNA sequence from
nonimmunocompromised individuals
JOURNAL J. Virol. 64, 3139-3143 (1990)
STANDARD full staff_review
REFERENCE 2 (bases 1 to 390)
AUTHORS Yogo,Y., Kitamura,T., Sugimoto,C., Hara,K., Iida,T., Taguchi,F.,
Tajima,A., Kawabe,K. and Aso,Y.
TITLE Sequence rearrangement in JC virus DNAs molecularly cloned from
renal transplant patients undergoing immunosuppression
JOURNAL Unpublished (1991)
STANDARD full staff_entry
COMMENT
[J. Virol. 64, 3139-3143 (1990)] sites.
These data kindly submitted in computer readable form by:
Yoshiaki Yogo
The Institute of Medical Science
The University of Tokyo
4-6-1 Shirokanedai
Minato-ku, Tokyo 108
Japan
Phone: 03-3443-8111 x287
Fax: 03-3443-9609
FEATURES Location/Qualifiers
CDS complement(<1..3)
/note="T antigen"
rep_origin 108..132
/note="origin of replication"
misc_signal 135..149
/note="TATA sequence"
CDS 388..>390
/note="agnoprotein"
BASE COUNT 115 a 92 c 104 g 79 t
ORIGIN 0.645-0.721 map unit.
1 catttttgct ttttgtagca aaaaattagt gcaaaaaagg gaaaaacaag ggaatttccc
61 tggcctccta aaaagcctcc acgcccttac tacttctgag taagcttgga ggcggaggcg
121 gcctcggcct cctgtatata taaaaaaaag ggaaggtagg gaggagctgg ctaaaactgg
181 atggctgcca gccaagcatg agctcatacc tagggagcca accagctgac agccagaggg
241 agccctggct gcatgccact ggcagttata gtgaaacccc tcccatagtc cttaatcaca
301 agtaaacaaa gcacaagggg aagtggaaag cagccagggg aacatgtttt gcgagccaga
361 gctgttttgg cttgtcacca gctggccatg
//