GenBank-Updates@genbank.bio.net (03/05/91)
LOCUS RICGLUTE 5494 bp ds-DNA PLN 05-MAR-1991 DEFINITION Rice prepro-glutelin gene, complete cds. ACCESSION D00584 KEYWORDS glutelin; multigene family; storage protein. SOURCE Oryza sativa L. (cultivar Nipponbare) DNA, clones lambda OGg[1, 11, 15, and 17]. ORGANISM Oryza sativa Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida; Commelinidae; Cyperales; Poaceae. REFERENCE 1 (sites) AUTHORS Takaiwa,F., Ebinuma,H., Kikuchi,S. and Oono,K. TITLE Nucleotide sequence of a rice glutelin gene JOURNAL FEBS Lett. 221, 43-47 (1987) STANDARD full staff_review REFERENCE 2 (bases 127 to 5257) AUTHORS Abe,K., Emori,Y., Kawasaki,H., Kondo,H., Suzuki,K. and Arai,S. TITLE Organization and primary sequence of multiple genes encoding type II mRNA species of rice prepro-glutelin JOURNAL Agric. Biol. Chem. 53, 2969-2973 (1989) STANDARD full staff_entry REFERENCE 3 (bases 1 to 5494) AUTHORS Abe,K. JOURNAL Unpublished (1990) STANDARD full staff_entry COMMENT [FEBS Lett. 221, 43-47 (1987)] sites. These data kindly submitted in computer readable form by: Keiko Abe Department of Agricultural Chemistry The University of Tokyo Yayoi-cho, Bunkyo-ku Tokyo 113 Japan Phone: 03-812-2111 x5130 Fax: 03-812-0544 Only type II clones were obtained from the library by using type I cDNA probe, and type I and type III genomic clones were not isolated as yet, although they are expressed to be found in the cDNA library. FEATURES Location/Qualifiers CDS join(2407..2737,2827..3101,3205..3684,3768..4181) /note="prepro-glutelin (" repeat_region 158..168 /note="repeated sequence" repeat_region 236..245 /note="repeated sequence" variation 304..398 /note="cattagctctctgtagtccttgctgtactctccttggtattccatg ctgtcctactacttgcttcatccccttctacattttgttctggttt ttg in lambda OGg15; ggcgcgctccggcgggcaggtctcgtttggtgagcggtgcatgcag gtggatgcggctcatatcgataacgtgatatccgccttgtagccaa cct in lambda OGg11" repeat_region 546..555 /note="repeated sequence" repeat_region 814..821 /note="repeated sequence" repeat_region 1370..1375 /note="repeated sequence" repeat_region 1391..1396 /note="repeated sequence" repeat_region 1429..1436 /note="repeated sequence" repeat_region 1496..1503 /note="repeated sequence" repeat_region 1586..1591 /note="repeated sequence" repeat_region 1837..1847 /note="repeated sequence" repeat_region 1900..1905 /note="repeated sequence" repeat_region 1956..1961 /note="repeated sequence" repeat_region 2063..2073 /note="repeated sequence" variation 2117..2117 /note="t in lambda OGg15; c in lambda OGg17 and [FEBS Lett. 221, 43-47 (1987)]" repeat_region 2121..2130 /note="repeated sequence" repeat_region 2162..2172 /note="repeated sequence" misc_signal 2205..2208 /note="CAAT box" repeat_region 2243..2252 /note="repeated sequence" variation 2271..2271 /note="t in lambda OGg15; taa in [FEBS Lett. 221, 43-47 (1987)]" variation 2283..2283 /note="t in lambda OGg15; c in [FEBS Lett. 221, 43-47 (1987)]" misc_signal 2340..2345 /note="TATA box" exon 2407..2737 /note="prepro-glutelin (exon 1)" intron 2738..2826 /note="glutelin gene intron 1" exon 2827..3101 /note="prepro-glutelin (exon 2)" intron 3102..3204 /note="glutelin gene intron 2" variation 3128..3128 /note="t in lambda OGg15; c in [FEBS Lett. 221, 43-47 (1987)]" exon 3205..3684 /note="prepro-glutelin (exon 3)" variation 3489..3489 /note="a in lambda OGg15; t in lambda OGg17" variation 3557..3557 /note="a in lambda OGg15; t in lambda OGg[1,11]" variation 3623..3623 /note="c in lambda OGg15; g in [FEBS Lett. 221, 43-47 (1987)]" intron 3685..3767 /note="glutelin gene intron 3" exon 3768..4181 /note="prepro-glutelin (exon 4)" variation 4042..4042 /note="a in lambda OGg15; c in lambda OGg11" variation 4154..4154 /note="c in lambda OGg15; g in lambda OGg17" misc_signal 4209..4226 /note="polyadenylation signal" misc_signal 4235..4239 /note="poly(A) site consensus sequence common in higher plant genes" misc_signal 4323..4329 /note="poly(A) site consensus sequence common in higher plant genes" misc_signal 4438..4442 /note="poly(A) site consensus sequence common in higher plant genes" variation 4553..4553 /note="g in lambda OGg15; a in [FEBS Lett. 221, 43-47 (1987)]" variation 4716..4716 /note="g in lambda OGg15; deletion in [FEBS Lett. 221, 43-47 (1987)]" variation 4828..4828 /note="a in lambda OGg15; deletion in [FEBS Lett. 221, 43-47 (1987)]" BASE COUNT 1652 a 1109 c 1074 g 1659 t ORIGIN 1 agttcatgca caattcaaga tgagaccgat catgtgatgt gtgttgccag ccttctggag 61 caaggtatac ttcatgtgat tactatctga gcattccccg agaattttct ggtcgttctt 121 tgcagcttga tgtcaatgga aacaatatgt tccactacat attgcaaagt tcttgtatgc 181 tctttactca accctcacgt gcggagcact tcctgggtta agtgtggttc tcatgctctg 241 ttttgcctcc tccatttctc ctccgttgca tttaaagtca catccccctc ctcaggtttt 301 ctccattagc tctctgtagt ccttgctgta ctctccttgg tattccatgc tgtcctacta 361 cttgcttcat ccccttctac attttgttct ggtttttggc ctgcatttcg gatcatgatg 421 tatgtgattt ccaatctgct gcaatatgaa tggagactct gtgctaacca tcaacaacat 481 gaaatgctta tgaggccttt gctgagcagc caatcttgcc tgtgtttatg tcttcacaga 541 attcctctgt tttgtttttc accctcaata tttggaaaca tttatctagg ttgtttgtgt 601 ccaggcctat aaatcataca tgatgttgtc gtattggatg tgaatgtggt ggcgtgttca 661 gtgccttgga tttgagtttg atgagagttg cttctgggtc accactcacc attatcgatg 721 ctcctcttca gcataaggta aaagtcttcc ctgtttacgt tattttaccc actatggttg 781 cttgggttgg ttttttcctg attgcttatg ccatggaaag tcatttgata tgttgaactt 841 gaattaactg tagaattgta tacatgttcc atttgtgttg tacttccttc ttttctatta 901 gtagcctcag atgagtgtga aaaaaacaga ttatataact tgccctataa atcatttgaa 961 aaaaatattg tacagtgaga aattgatata tagtgaattt ttaagagcat gttttcctaa 1021 agaagtatat attttctatg tacaaagcca ttgaagtaat tgtagataca ggtaattaga 1081 ctttttggac ttacactgct acctttaagt aacaatcatg agcaatagtg ttgcaatgat 1141 atttaggctg cattcgttta ctctcttgat ttccatgagc acgcttccca aactgttaaa 1201 ctctgtgttt tttgccaaaa aaaaatgtat aggaaagttg cttttaaaaa atcatatcaa 1261 tccatttttt aagttatagc taatacttaa ttaatcatgc gctaataagt cactctgttt 1321 ttcgtactag agagattgtt ttgaaccagc actcaagaac acagccttaa cccagccaaa 1381 taatgctaca acctaccagt ccacacctct tgtaaagcat ttgttgcatg gaaaagctaa 1441 gatgacagca acctgttcag gaaaacactg acaaggtcat agggagaggg agcttttgga 1501 aaggtgccgt gcagttcaaa caattagtta gcagtagggt gttggttttt gctcacagca 1561 ataagaagtt aatcatggtg taggcaaccc aaataaaaca ccaaaatatg cacaaggcag 1621 tttgttgtat tctgtagtac agacaaaact aaaagtaatg aaagaagatg tggtgttaga 1681 aaaggaaaca atatcatgag taatgtgtga gcattatggg accacgaaat aaaaagaaca 1741 ttttgatgag tcgtgtatcc tcgatgagcc tcaaaagttc tctcaccccg gataagaaac 1801 ccttaagcaa tgtgcaaagt ttgcattctc cactgacata atgcaaaata agatatcatc 1861 gatgacatag caactcatgc atcatatcat gcctctctca acctattcat tcctactcat 1921 ctacataagt atcttcagct aaatgttaga acataaaccc ataagtcacg tttgatgagt 1981 attaggcgtg acacatgaca aatcacagac tcaagcaaga taaagcaaaa tgatgtgtac 2041 ataaaactcc agagctatat gtcatattgc aaaaagagga gagcttataa gacaaggcat 2101 gactcacaaa aattcatttg cctttcgtgt caaaaagagg agggctttac attatccatg 2161 tcatattgca aaagaaagag agaaagaaca acacaatgct gcgtcaatta tacatatctg 2221 tatgtccatc attattcatc cacctttcgt gtaccacact tcatatatca tgagtcactt 2281 catgtctgga cattaacaaa ctctatctta acatttagat gcaagagcct ttatctcact 2341 ataaatgcac gatgatttct cattgtttct cacaaaaagc attcagttca ttagtcctac 2401 aacaacatgg catccataaa tcgccccata gttttcttca cagtttgctt gttcctcttg 2461 tgcgatggct ccctagccca gcagctatta ggccagagca ctagtcaatg gcagagttct 2521 cgtcgtggaa gtccgagagg atgtagattt gataggttgc aagcatttga gccaattcgg 2581 agtgtgaggt ctcaagctgg cacaactgag ttcttcgatg tctctaatga gttgtttcaa 2641 tgtaccggag tatctgttgt ccgccgagtt attgaaccta gaggcctact actaccccat 2701 tacactaatg gtgcatctct agtatatatc atccaaggtt tgtgtaacaa tttaagtgca 2761 taatgaatta atgattggct gcgatattta cattgcttgt aattaacatg catgccatac 2821 tttcagggag aggtataaca gggccgactt tcccaggctg tcctgagacc taccagcagc 2881 agttccaaca atcagggcaa gcccaattga ccgaaagtca aagccaaagc cataagttca 2941 aggatgaaca tcaaaagatt caccgtttca gacaaggaga tgttatcgcg ttgcctgctg 3001 gtgtagctca ttggtgctac aatgatggtg aagtgccggt tgttgccata tatgtcactg 3061 atatcaacaa cggtgctaat caacttgacc ctcgacagag ggtaattaag caaaacttat 3121 ccaaaactaa acattttact attattttga cctttttatt ccacttttct tagacaatga 3181 tttaacctcg taatcaattg ttaggatttc ttgttagctg gaaataagag aaaccctcaa 3241 gcatacaggc gtgaagttga ggagtggtca caaaacatat ttagtggctt tagcactgaa 3301 ctgcttagcg aggcttttgg cataagcaac caagttgcaa ggcagctcca gtgtcaaaat 3361 gaccaaagag gagaaattgt ccgcgttgaa cgcgggctca gtttgctgca accatatgca 3421 tcattgcaag agcaggaaca aggacaaatg caatcaagag agcattatca agaaggagga 3481 tatcagcaaa gtcaatatgg gagtggctgc cctaacggtt tggatgagac cttttgcacc 3541 atgagggtaa ggcaaaacat cgataatcct aaccgtgctg atacatacaa cccaagagct 3601 ggaagggtta caaatctcaa cacccagaat ttccccattc ttaatcttgt acagatgagc 3661 gccgttaaag taaatctata ccaggtaaat gaacagcaca ttttttttct tggcaaaagc 3721 tttaatgcac acaatatgct taatgatgtg tatctgttct attgcagaat gcactccttt 3781 caccgttctg gaacatcaac gctcacagca tcgtgtatat tactcaaggc cgagcccagg 3841 ttcaagttgt caacaacaat ggaaagacgg tgttcaacgg agagcttcgt cgtggacagc 3901 tacttattgt accacaacac tatgtagttg taaagaaggc acaaagagaa ggatgtgctt 3961 acattgcatt caagacaaac cctaactcta tggtaagcca cattgcagga aagagttcca 4021 tcttccgtgc tctcccaact gatgttctag caaatgcata tcgcatctca agagaagagg 4081 ctcagaggct caagcataac agaggagatg agttcggtgc attcactccc ctccaataca 4141 agagctacca agacgtttat aatgtggcgg aatcctctta agttggcaat gcggataaag 4201 aataactaaa taaataaata aataaattgc aagcaattgc gttgctgcta tgtactgtaa 4261 aagtttctta taatatcagt tctgaatgct aaggacatcc ctcaagatgg tctttctatt 4321 tttgtgttcc cgttccaatg tactgttggt atcctcttgg agattcatca atatgagaaa 4381 acagagaatg gacaaccctc ccttatctta tggaaaaaaa aggttctcac ctgccagaat 4441 tggattctgt tgatattatt ctactacatt ttgataggaa tgaataaaag aagcttgctc 4501 aagcaaatgg cataaagttc ctttgccgtg gccccccatc ttgaagaata tgggcatcta 4561 agtttcttat catacattgt catcagctcc acaaattttc ttattctact gatagcagct 4621 gatatgtatc agaaactttg agtaatttat ataattctag acacgattaa agtattttct 4681 ggatacgagg aaggtgccct accagtcaag tctcaggctt gcaccagagt acttagaaga 4741 ttaaggttca gagttcaggc agtcaactaa gcagggttac aaaaatcacc agtgatcaaa 4801 tttgtcagat ggaataggta ttccacgaac tgggtgtccc agcatatggc ttgtatgttc 4861 tttacttctt ttttacagca tatggcttgt aagtgagctt ccgaattcag ataagatgtc 4921 caatatgcat atagctcaca tcctgacaag tgcagttcct atccttggct gatggtatga 4981 gatcccaagg tcttttggcc ttctcaacct ctccttttca tcacaaaatg ataggtgctc 5041 ttctggactt agatttagtg ctgcagaacc tgcgtgagag aacaacgaac atattagatt 5101 ctcattaaag atatgtgcaa atatgcgagt aacttgtacg gcgaagcaag agacatacat 5161 cttttgagaa tgttggcatg aaaggctcca gcaaacatgc caggaggtac acaattccaa 5221 ctgaggtttt catcacagtt gcgcaactgg ctggatcttg tttgtaaagc ttccaaaact 5281 gactctcctg catattaatg gaaaatttta gacagttcca ctcgaaagta tatttagtgt 5341 acaattagga gcataaggga agaaaagaag aataaagact tacttgtagg tatgcatttc 5401 cttcgctaga aatggccatt gcaatcttca gcccttgttt tattttgacc tgttaatgga 5461 aatggttgtt agcacgattc ttcagatcct agag //