GenBank-Updates@genbank.bio.net (03/05/91)
LOCUS RICGLUTE 5494 bp ds-DNA PLN 05-MAR-1991
DEFINITION Rice prepro-glutelin gene, complete cds.
ACCESSION D00584
KEYWORDS glutelin; multigene family; storage protein.
SOURCE Oryza sativa L. (cultivar Nipponbare) DNA, clones lambda OGg[1, 11,
15, and 17].
ORGANISM Oryza sativa
Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida;
Commelinidae; Cyperales; Poaceae.
REFERENCE 1 (sites)
AUTHORS Takaiwa,F., Ebinuma,H., Kikuchi,S. and Oono,K.
TITLE Nucleotide sequence of a rice glutelin gene
JOURNAL FEBS Lett. 221, 43-47 (1987)
STANDARD full staff_review
REFERENCE 2 (bases 127 to 5257)
AUTHORS Abe,K., Emori,Y., Kawasaki,H., Kondo,H., Suzuki,K. and Arai,S.
TITLE Organization and primary sequence of multiple genes encoding type
II mRNA species of rice prepro-glutelin
JOURNAL Agric. Biol. Chem. 53, 2969-2973 (1989)
STANDARD full staff_entry
REFERENCE 3 (bases 1 to 5494)
AUTHORS Abe,K.
JOURNAL Unpublished (1990)
STANDARD full staff_entry
COMMENT
[FEBS Lett. 221, 43-47 (1987)] sites.
These data kindly submitted in computer readable form by:
Keiko Abe
Department of Agricultural Chemistry
The University of Tokyo
Yayoi-cho, Bunkyo-ku
Tokyo 113
Japan
Phone: 03-812-2111 x5130
Fax: 03-812-0544
Only type II clones were obtained from the library by using type I
cDNA probe, and type I and type III genomic clones were not
isolated as yet, although they are expressed to be found in the
cDNA library.
FEATURES Location/Qualifiers
CDS join(2407..2737,2827..3101,3205..3684,3768..4181)
/note="prepro-glutelin ("
repeat_region 158..168
/note="repeated sequence"
repeat_region 236..245
/note="repeated sequence"
variation 304..398
/note="cattagctctctgtagtccttgctgtactctccttggtattccatg
ctgtcctactacttgcttcatccccttctacattttgttctggttt ttg in
lambda OGg15;
ggcgcgctccggcgggcaggtctcgtttggtgagcggtgcatgcag
gtggatgcggctcatatcgataacgtgatatccgccttgtagccaa cct in
lambda OGg11"
repeat_region 546..555
/note="repeated sequence"
repeat_region 814..821
/note="repeated sequence"
repeat_region 1370..1375
/note="repeated sequence"
repeat_region 1391..1396
/note="repeated sequence"
repeat_region 1429..1436
/note="repeated sequence"
repeat_region 1496..1503
/note="repeated sequence"
repeat_region 1586..1591
/note="repeated sequence"
repeat_region 1837..1847
/note="repeated sequence"
repeat_region 1900..1905
/note="repeated sequence"
repeat_region 1956..1961
/note="repeated sequence"
repeat_region 2063..2073
/note="repeated sequence"
variation 2117..2117
/note="t in lambda OGg15; c in lambda OGg17 and [FEBS
Lett. 221, 43-47 (1987)]"
repeat_region 2121..2130
/note="repeated sequence"
repeat_region 2162..2172
/note="repeated sequence"
misc_signal 2205..2208
/note="CAAT box"
repeat_region 2243..2252
/note="repeated sequence"
variation 2271..2271
/note="t in lambda OGg15; taa in [FEBS Lett. 221, 43-47
(1987)]"
variation 2283..2283
/note="t in lambda OGg15; c in [FEBS Lett. 221, 43-47
(1987)]"
misc_signal 2340..2345
/note="TATA box"
exon 2407..2737
/note="prepro-glutelin (exon 1)"
intron 2738..2826
/note="glutelin gene intron 1"
exon 2827..3101
/note="prepro-glutelin (exon 2)"
intron 3102..3204
/note="glutelin gene intron 2"
variation 3128..3128
/note="t in lambda OGg15; c in [FEBS Lett. 221, 43-47
(1987)]"
exon 3205..3684
/note="prepro-glutelin (exon 3)"
variation 3489..3489
/note="a in lambda OGg15; t in lambda OGg17"
variation 3557..3557
/note="a in lambda OGg15; t in lambda OGg[1,11]"
variation 3623..3623
/note="c in lambda OGg15; g in [FEBS Lett. 221, 43-47
(1987)]"
intron 3685..3767
/note="glutelin gene intron 3"
exon 3768..4181
/note="prepro-glutelin (exon 4)"
variation 4042..4042
/note="a in lambda OGg15; c in lambda OGg11"
variation 4154..4154
/note="c in lambda OGg15; g in lambda OGg17"
misc_signal 4209..4226
/note="polyadenylation signal"
misc_signal 4235..4239
/note="poly(A) site consensus sequence common in higher
plant genes"
misc_signal 4323..4329
/note="poly(A) site consensus sequence common in higher
plant genes"
misc_signal 4438..4442
/note="poly(A) site consensus sequence common in higher
plant genes"
variation 4553..4553
/note="g in lambda OGg15; a in [FEBS Lett. 221, 43-47
(1987)]"
variation 4716..4716
/note="g in lambda OGg15; deletion in [FEBS Lett. 221,
43-47 (1987)]"
variation 4828..4828
/note="a in lambda OGg15; deletion in [FEBS Lett. 221,
43-47 (1987)]"
BASE COUNT 1652 a 1109 c 1074 g 1659 t
ORIGIN
1 agttcatgca caattcaaga tgagaccgat catgtgatgt gtgttgccag ccttctggag
61 caaggtatac ttcatgtgat tactatctga gcattccccg agaattttct ggtcgttctt
121 tgcagcttga tgtcaatgga aacaatatgt tccactacat attgcaaagt tcttgtatgc
181 tctttactca accctcacgt gcggagcact tcctgggtta agtgtggttc tcatgctctg
241 ttttgcctcc tccatttctc ctccgttgca tttaaagtca catccccctc ctcaggtttt
301 ctccattagc tctctgtagt ccttgctgta ctctccttgg tattccatgc tgtcctacta
361 cttgcttcat ccccttctac attttgttct ggtttttggc ctgcatttcg gatcatgatg
421 tatgtgattt ccaatctgct gcaatatgaa tggagactct gtgctaacca tcaacaacat
481 gaaatgctta tgaggccttt gctgagcagc caatcttgcc tgtgtttatg tcttcacaga
541 attcctctgt tttgtttttc accctcaata tttggaaaca tttatctagg ttgtttgtgt
601 ccaggcctat aaatcataca tgatgttgtc gtattggatg tgaatgtggt ggcgtgttca
661 gtgccttgga tttgagtttg atgagagttg cttctgggtc accactcacc attatcgatg
721 ctcctcttca gcataaggta aaagtcttcc ctgtttacgt tattttaccc actatggttg
781 cttgggttgg ttttttcctg attgcttatg ccatggaaag tcatttgata tgttgaactt
841 gaattaactg tagaattgta tacatgttcc atttgtgttg tacttccttc ttttctatta
901 gtagcctcag atgagtgtga aaaaaacaga ttatataact tgccctataa atcatttgaa
961 aaaaatattg tacagtgaga aattgatata tagtgaattt ttaagagcat gttttcctaa
1021 agaagtatat attttctatg tacaaagcca ttgaagtaat tgtagataca ggtaattaga
1081 ctttttggac ttacactgct acctttaagt aacaatcatg agcaatagtg ttgcaatgat
1141 atttaggctg cattcgttta ctctcttgat ttccatgagc acgcttccca aactgttaaa
1201 ctctgtgttt tttgccaaaa aaaaatgtat aggaaagttg cttttaaaaa atcatatcaa
1261 tccatttttt aagttatagc taatacttaa ttaatcatgc gctaataagt cactctgttt
1321 ttcgtactag agagattgtt ttgaaccagc actcaagaac acagccttaa cccagccaaa
1381 taatgctaca acctaccagt ccacacctct tgtaaagcat ttgttgcatg gaaaagctaa
1441 gatgacagca acctgttcag gaaaacactg acaaggtcat agggagaggg agcttttgga
1501 aaggtgccgt gcagttcaaa caattagtta gcagtagggt gttggttttt gctcacagca
1561 ataagaagtt aatcatggtg taggcaaccc aaataaaaca ccaaaatatg cacaaggcag
1621 tttgttgtat tctgtagtac agacaaaact aaaagtaatg aaagaagatg tggtgttaga
1681 aaaggaaaca atatcatgag taatgtgtga gcattatggg accacgaaat aaaaagaaca
1741 ttttgatgag tcgtgtatcc tcgatgagcc tcaaaagttc tctcaccccg gataagaaac
1801 ccttaagcaa tgtgcaaagt ttgcattctc cactgacata atgcaaaata agatatcatc
1861 gatgacatag caactcatgc atcatatcat gcctctctca acctattcat tcctactcat
1921 ctacataagt atcttcagct aaatgttaga acataaaccc ataagtcacg tttgatgagt
1981 attaggcgtg acacatgaca aatcacagac tcaagcaaga taaagcaaaa tgatgtgtac
2041 ataaaactcc agagctatat gtcatattgc aaaaagagga gagcttataa gacaaggcat
2101 gactcacaaa aattcatttg cctttcgtgt caaaaagagg agggctttac attatccatg
2161 tcatattgca aaagaaagag agaaagaaca acacaatgct gcgtcaatta tacatatctg
2221 tatgtccatc attattcatc cacctttcgt gtaccacact tcatatatca tgagtcactt
2281 catgtctgga cattaacaaa ctctatctta acatttagat gcaagagcct ttatctcact
2341 ataaatgcac gatgatttct cattgtttct cacaaaaagc attcagttca ttagtcctac
2401 aacaacatgg catccataaa tcgccccata gttttcttca cagtttgctt gttcctcttg
2461 tgcgatggct ccctagccca gcagctatta ggccagagca ctagtcaatg gcagagttct
2521 cgtcgtggaa gtccgagagg atgtagattt gataggttgc aagcatttga gccaattcgg
2581 agtgtgaggt ctcaagctgg cacaactgag ttcttcgatg tctctaatga gttgtttcaa
2641 tgtaccggag tatctgttgt ccgccgagtt attgaaccta gaggcctact actaccccat
2701 tacactaatg gtgcatctct agtatatatc atccaaggtt tgtgtaacaa tttaagtgca
2761 taatgaatta atgattggct gcgatattta cattgcttgt aattaacatg catgccatac
2821 tttcagggag aggtataaca gggccgactt tcccaggctg tcctgagacc taccagcagc
2881 agttccaaca atcagggcaa gcccaattga ccgaaagtca aagccaaagc cataagttca
2941 aggatgaaca tcaaaagatt caccgtttca gacaaggaga tgttatcgcg ttgcctgctg
3001 gtgtagctca ttggtgctac aatgatggtg aagtgccggt tgttgccata tatgtcactg
3061 atatcaacaa cggtgctaat caacttgacc ctcgacagag ggtaattaag caaaacttat
3121 ccaaaactaa acattttact attattttga cctttttatt ccacttttct tagacaatga
3181 tttaacctcg taatcaattg ttaggatttc ttgttagctg gaaataagag aaaccctcaa
3241 gcatacaggc gtgaagttga ggagtggtca caaaacatat ttagtggctt tagcactgaa
3301 ctgcttagcg aggcttttgg cataagcaac caagttgcaa ggcagctcca gtgtcaaaat
3361 gaccaaagag gagaaattgt ccgcgttgaa cgcgggctca gtttgctgca accatatgca
3421 tcattgcaag agcaggaaca aggacaaatg caatcaagag agcattatca agaaggagga
3481 tatcagcaaa gtcaatatgg gagtggctgc cctaacggtt tggatgagac cttttgcacc
3541 atgagggtaa ggcaaaacat cgataatcct aaccgtgctg atacatacaa cccaagagct
3601 ggaagggtta caaatctcaa cacccagaat ttccccattc ttaatcttgt acagatgagc
3661 gccgttaaag taaatctata ccaggtaaat gaacagcaca ttttttttct tggcaaaagc
3721 tttaatgcac acaatatgct taatgatgtg tatctgttct attgcagaat gcactccttt
3781 caccgttctg gaacatcaac gctcacagca tcgtgtatat tactcaaggc cgagcccagg
3841 ttcaagttgt caacaacaat ggaaagacgg tgttcaacgg agagcttcgt cgtggacagc
3901 tacttattgt accacaacac tatgtagttg taaagaaggc acaaagagaa ggatgtgctt
3961 acattgcatt caagacaaac cctaactcta tggtaagcca cattgcagga aagagttcca
4021 tcttccgtgc tctcccaact gatgttctag caaatgcata tcgcatctca agagaagagg
4081 ctcagaggct caagcataac agaggagatg agttcggtgc attcactccc ctccaataca
4141 agagctacca agacgtttat aatgtggcgg aatcctctta agttggcaat gcggataaag
4201 aataactaaa taaataaata aataaattgc aagcaattgc gttgctgcta tgtactgtaa
4261 aagtttctta taatatcagt tctgaatgct aaggacatcc ctcaagatgg tctttctatt
4321 tttgtgttcc cgttccaatg tactgttggt atcctcttgg agattcatca atatgagaaa
4381 acagagaatg gacaaccctc ccttatctta tggaaaaaaa aggttctcac ctgccagaat
4441 tggattctgt tgatattatt ctactacatt ttgataggaa tgaataaaag aagcttgctc
4501 aagcaaatgg cataaagttc ctttgccgtg gccccccatc ttgaagaata tgggcatcta
4561 agtttcttat catacattgt catcagctcc acaaattttc ttattctact gatagcagct
4621 gatatgtatc agaaactttg agtaatttat ataattctag acacgattaa agtattttct
4681 ggatacgagg aaggtgccct accagtcaag tctcaggctt gcaccagagt acttagaaga
4741 ttaaggttca gagttcaggc agtcaactaa gcagggttac aaaaatcacc agtgatcaaa
4801 tttgtcagat ggaataggta ttccacgaac tgggtgtccc agcatatggc ttgtatgttc
4861 tttacttctt ttttacagca tatggcttgt aagtgagctt ccgaattcag ataagatgtc
4921 caatatgcat atagctcaca tcctgacaag tgcagttcct atccttggct gatggtatga
4981 gatcccaagg tcttttggcc ttctcaacct ctccttttca tcacaaaatg ataggtgctc
5041 ttctggactt agatttagtg ctgcagaacc tgcgtgagag aacaacgaac atattagatt
5101 ctcattaaag atatgtgcaa atatgcgagt aacttgtacg gcgaagcaag agacatacat
5161 cttttgagaa tgttggcatg aaaggctcca gcaaacatgc caggaggtac acaattccaa
5221 ctgaggtttt catcacagtt gcgcaactgg ctggatcttg tttgtaaagc ttccaaaact
5281 gactctcctg catattaatg gaaaatttta gacagttcca ctcgaaagta tatttagtgt
5341 acaattagga gcataaggga agaaaagaag aataaagact tacttgtagg tatgcatttc
5401 cttcgctaga aatggccatt gcaatcttca gcccttgttt tattttgacc tgttaatgga
5461 aatggttgtt agcacgattc ttcagatcct agag
//