GenBank-Updates@genbank.bio.net (03/05/91)
LOCUS GFLRNA3 1114 bp ss-RNA VRL 05-MAR-1991
DEFINITION Grapevine fanleaf virus, satellite RNA (RNA3), complete sequence.
ACCESSION D00442
KEYWORDS satellite RNA.
SOURCE Grapevine fanleaf virus (strain F13), satellite RNA (RNA3), cDNA to
RNA3, clone pA4 and pA5.
ORGANISM Grapevine fanleaf virus
Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses;
Nepovirus.
REFERENCE 1 (bases 1 to 1114)
AUTHORS Fuchs,M., Pinck,M., Serghini,M.A., Ravelonandro,M., Walter,B. and
Pinck,L.
TITLE The nucleotide sequence of satellite RNA in grapevine fanleaf
virus, strain F13
JOURNAL J. Gen. Virol. 70, 955-962 (1989)
STANDARD full staff_entry
COMMENT The satellite RNA has a polyadenylated 3' end, and probably a
protein (VPg) linked to the 5' terminus, and produces 39K protein
in a wheatgerm translation system. Furthermore there is the weaker
upper band. It may be readthrough product of 39K protein.
FEATURES Location/Qualifiers
misc_feature 3..10
/note="consensus sequence at the 5' end of nepovirus RNAs"
CDS 15..1040
/note="39K product, P3"
variation 720..720
/note="t in clone pA5; c in clone pA4"
BASE COUNT 246 a 295 c 313 g 260 t
ORIGIN 5' end of satellite RNA.
1 tatgaaaaat ttctatggac tcttacgtta ccgtggatcc atcttttcac tctcccagaa
61 tctcacttga gattctggtc cctaccaagt atgcgaagct gtttaccctt aagcagctct
121 ctcgcatgct tgcattgtcg tgtaagcacc gtgcacggca agccgctaac ccggtaagca
181 aacggacctc ccgagaccga aatgggagta aaacaatggg tcagggtcct tctgctgtgg
241 ccccgcaagt gtcgaaggga cacaatcagc aagtagatgg aggggtttgt ctagccccgg
301 tgaagtcaaa gcgtgcggta cggcgtgaaa agcgccgtac tgccgctaag aaggccacta
361 ataaggccaa gaccgagacc aaactcgtta aaaagggtgg gtctagtatc cacgccccaa
421 aggcaccgaa gcggacgtcg tatttgtcta gtctgctttc gagtccttct ggggcgaaag
481 ccaaaatggg ggctctgagc aagccccccc aaacaaaaaa tgctcccgac gccaacgagg
541 gtggtttcac cctcactgct atcacaccgg ctgagtgccg ggcggaagct aggcgcagat
601 tccaccccat cacaggatcc tctcgtggtc cttatgggtt ctgcacccgc tcccgtgagg
661 gttgtggcgt gtgtgccgat tgtgtggaaa agaaggcaca cctggacttc aaccggagtt
721 ttgacactat tggcacttcg cgtgtcattc gtgtcgactc gatgatggaa gaagtggccg
781 aagacttggc cagccctagt gtcctagaac cctctgggtt ctgggctcct gctgaaaagc
841 aggctccttc tggagagggg cattcccgta gaaggtgcga cgtggtgaca ctcgcacgcg
901 taactccggt tctccggatg ttgcgtaagg tcgatcccac tcttgtggac aaccgacttt
961 tatgggaggc cgcgtttagg acggtctttc ctcagcgcaa gtgcgtgtat ccccacggtt
1021 gcttctgtga ccgtgggtag ggaagattgc agcgggacat cgtttgttta tagtctggcg
1081 taagctggga ttttggttgc tcattagcca actc
//