GenBank-Updates@genbank.bio.net (03/05/91)
LOCUS HSSGII 1378 bp ds-DNA VRL 05-MAR-1991
DEFINITION Pseudorabies virus (Phylaxia strain) glycoprotein gII gene and
3'-flanking region.
ACCESSION D00464
KEYWORDS glycoprotein; repeat sequence.
SOURCE Pseudorabies virus (Phylaxia strain) BamHI fragment 1, SalI
subfragment 1G, clone MPG3.
ORGANISM Pseudorabies virus
Viridae; ds-DNA enveloped viruses; Herpesviridae;
Alphaherpesvirinae.
REFERENCE 1 (bases 1 to 1378)
AUTHORS Simon,A., Mettenleiter,T.C. and Rziha,H.-J.
TITLE Pseudorabies virus displays variable numbers of a repeat unit
adjacent to the 3'end of the glycoprotein gII gene
JOURNAL J. Gen. Virol. 70, 1239-1246 (1989)
STANDARD full staff_entry
COMMENT Sequence was done by the dideoxy chain termination method using
deoxy-7-deazaguanosine triphosphate instead of dGTP to avoid
sequencing artifacts.
FEATURES Location/Qualifiers
repeat_region 288..296
/note="type I repeat"
repeat_region 303..311
/note="type I repeat"
repeat_region 318..326
/note="type I repeat"
repeat_region 333..341
/note="type I repeat"
repeat_region 348..356
/note="type I repeat"
repeat_region 363..371
/note="type I repeat"
repeat_region 378..386
/note="type I repeat"
repeat_region 393..401
/note="type I repeat"
repeat_region 408..416
/note="type I repeat"
repeat_region 423..431
/note="type I repeat"
repeat_region 438..448
/note="type II repeat"
repeat_region 455..463
/note="type I repeat"
repeat_region 470..478
/note="type I repeat"
repeat_region 485..495
/note="type II repeat"
repeat_region 502..510
/note="type I repeat"
repeat_region 517..527
/note="type II repeat"
repeat_region 534..542
/note="type I repeat"
repeat_region 549..557
/note="type I repeat"
repeat_region 564..572
/note="type I repeat"
repeat_region 579..587
/note="type I repeat"
repeat_region 594..602
/note="type I repeat"
repeat_region 609..617
/note="type I repeat"
repeat_region 624..634
/note="type II repeat"
repeat_region 641..649
/note="type I repeat"
repeat_region 656..666
/note="type II repeat"
repeat_region 673..681
/note="type I repeat"
repeat_region 688..696
/note="type I repeat"
repeat_region 703..711
/note="type I repeat"
repeat_region 718..726
/note="type I repeat"
repeat_region 733..741
/note="type I repeat"
repeat_region 748..756
/note="type I repeat"
repeat_region 763..771
/note="type I repeat"
repeat_region 778..788
/note="type II repeat"
repeat_region 795..803
/note="type I repeat"
repeat_region 810..820
/note="type II repeat"
repeat_region 827..835
/note="type I repeat"
repeat_region 842..850
/note="type I repeat"
repeat_region 857..865
/note="type I repeat"
repeat_region 872..880
/note="type I repeat"
repeat_region 887..895
/note="type I repeat"
repeat_region 902..910
/note="type I repeat"
repeat_region 917..925
/note="type I repeat"
repeat_region 932..940
/note="type I repeat"
repeat_region 947..955
/note="type I repeat"
repeat_region 962..970
/note="type I repeat"
repeat_region 977..985
/note="type I repeat"
repeat_region 992..1000
/note="type I repeat"
repeat_region 1007..1015
/note="type I repeat"
repeat_region 1022..1030
/note="type I repeat"
repeat_region 1037..1045
/note="type I repeat"
repeat_region 1052..1060
/note="type I repeat"
repeat_region 1067..1075
/note="type I repeat"
repeat_region 1082..1090
/note="type I repeat"
repeat_region 1097..1105
/note="type I repeat"
misc_feature 1131..1135
/note="3'-end of glycoprotein gII mRNA"
misc_signal complement(1151..1156)
/note="polyA signal"
CDS complement(1175..>1378)
/note="glycoprotein gII, carboxyl terminus"
BASE COUNT 280 a 264 c 737 g 97 t
ORIGIN 1 bp upstream of SalI site.
1 gtcgactcgg ccgcggcccc cgccaccccc gcggtccccg cccagggcga gcccgaccac
61 gtgtaccagc acccccgccc gcggacccgc gcggacgacg gcctgtacca gcacccccga
121 cccgtcatcg acctcaccgg ccaccgcgcg tcgcgccgca agagctggcg cgtgtgacgg
181 ccccgcggac cccccgttgt atggtttccc cccgttgccc ccgtgtgtgg aaataaagtt
241 tttttctaat tctgtacaca cggcgtgcgt gtcatcgtgg tcgcgggacg gaggggagag
301 ggacggaggg gagagggacg gaggggagag ggacggaggg gagagggacg gaggggagag
361 ggacggaggg gagagggacg gaggggagag ggacggaggg gagagggacg gaggggagag
421 ggacggaggg gagagggacg ggggggggag agggacggag gggagaggga cggaggggag
481 agggacgggg gggggagagg gacggagggg agagggacgg gggggggaga gggacggagg
541 ggagagggac ggaggggaga gggacggagg ggagagggac ggaggggaga gggacggagg
601 ggagagggac ggaggggaga gggacggggg ggggagaggg acggagggga gagggacggg
661 ggggggagag ggacggaggg gagagggacg gaggggagag ggacggaggg gagagggacg
721 gaggggagag ggacggaggg gagagggacg gaggggagag ggacggaggg gagagggacg
781 ggggggggag agggacggag gggagaggga cggggggggg agagggacgg aggggagagg
841 gacggagggg agagggacgg aggggagagg gacggagggg agagggacgg aggggagagg
901 gacggagggg agagggacgg aggggagagg gacggagggg agagggacgg aggggagagg
961 gacggagggg agagggacgg aggggagagg gacggagggg agagggacgg aggggagagg
1021 gacggagggg agagggacgg aggggagagg gacggagggg agagggacgg aggggagagg
1081 gacggagggg agagggacgg aggggagagg gacgagacgg acgcgagacg tgttgccaaa
1141 caagcgcatc tttattgttt cccgcgggag ggggctacag ggcgtcgggg tcctcgctct
1201 cgaggcgctg gtagtgccgg cggcgcgtgg ccatcgcccc gacgcggctg gccagcagcg
1261 cgggcccgct gttcttcttg cgcgccttgt gctcctgctg ctcgagggcc gacacgatgg
1321 acatgtaccg gatcatgtcc cgggcctggt ccagcttggc ctcgtccacg tcgccctc
//