GenBank-Updates@genbank.bio.net (03/05/91)
LOCUS HSSTK 2880 bp ds-DNA VRL 05-MAR-1991 DEFINITION Herpesvirus saimiri thymidine kinase (TK) gene, complete cds; and glycoprotein H gene, 5' end. ACCESSION D00543 KEYWORDS glycoprotein H; thymidine kinase. SOURCE Herpesvirus saimiri (strain 11[Onc]), viral light (L)DNA, clone pKK102. ORGANISM Herpesvirus saimiri Viridae; ds-DNA enveloped viruses; Herpesviridae; Gammaherpesviridae. REFERENCE 1 (bases 1 to 2880) AUTHORS Honess,R.W., Craxton,M.A., Williams,L. and Gompels,U.A. TITLE A comparative analysis of the sequence of the thymidine kinase gene of a gammaherpesvirus, herpesvirus saimiri JOURNAL J. Gen. Virol. 70, 3003-3013 (1989) STANDARD full staff_entry COMMENT This region is very compact, using overlapping coding sequences and with nucleotides shared by initiation and termination codons of neighbouring reading frames. FEATURES Location/Qualifiers misc_signal 398..403 /note="poly(A) signal" misc_signal 1045..1050 /note="poly(A) signal" misc_signal 1066..1071 /note="poly(A) signal" CDS 1121..2704 /note="thymidine kinase" misc_signal 1244..1249 /note="poly(A) signal" misc_signal 1751..1756 /note="poly(A) signal" misc_signal 2304..2309 /note="poly(A) signal" CDS 2701..>2880 /note="glycoprotein H" misc_signal 2778..2783 /note="poly(A) signal" misc_signal 2782..2787 /note="poly(A) signal" BASE COUNT 897 a 521 c 531 g 931 t ORIGIN 1 bp upstream of EcoRI site. 1 gaattctggt aattcaaagt gcctcttaat tctttcggga atactcgtct ctgcatagct 61 atatctgtga gactggaata ccaaggccca taagaaggaa gccactgttg ctggttggtg 121 taaagacttg atacaagttc aatcttgaag ttagattcaa cggtgaatcc gggatcccct 181 ggagctacag taattgtata gacatttgtt ttaaagtttg tgggttgaga ctgggtagtt 241 ggagaaagcg gcttcggagg agaaggaagt agttgtggtg agtcttgaaa cttttccacc 301 atgttttcta ttatttctaa gtctcttgtt attatgctgc ttctttttac atggtcttgc 361 attagcttgt ctagctcgta gttgatcatt gcttttttta tttggtctgt ctctaaattt 421 agaagtctgg ttctgtagag tgaagcattt ttttttgttt ctctcaatga gtttctgtct 481 atatgcagaa tgttctgtgg atgtggagtc caaaaggctg tcccatttaa aaatacgctt 541 gggttttggc gcaagatgta ttttttttct aatttccaca tctgccctag accataaaaa 601 gcaactaagt ttttcttcac ttgtgtgtgt aagatttaca ggaaactttg gggtttctat 661 atgtaatgtt ttaagagtct tttggctctt aaatataaga ataggaagca ctgtccatgc 721 ttgccgtcct aaaggagcat aattatgtat aaagttaact gtgtctgcta gttggcacaa 781 cccctgagac ctttgtgact ttctaatgtc actgattaga tctaagttgc tagtcatgca 841 cgttttaagc tctatgacat agcatattct agtttctccg caacttgtca gcataacaca 901 gtctgctatt ctgtttccaa gactgacttc aaaaaaaagc cgagtttttg ctcgtagagg 961 gcacggatga ctaatgctta aaaatttaaa aatagaagct gatacagtgt acttagctag 1021 ttttttgtaa gtttccaagt gtgctttatt gcctgcaatt tttcttttat ttggaaggtg 1081 tgctaacact tccttgtctc tttgtttaat aacagatagc atgacaggaa gaggacagcc 1141 tccaaaaaag aatgacacct atgactatcc aagaaaacaa ccgccaaaga atggcagtta 1201 tgacaattat gactatccta cgtctacaaa aacgcggtca actaataaac agcgaaaaga 1261 ttcaaactat cctcctagag aaacaatttt tgaaccagat ctagctgctg acccgatata 1321 cagcgtccct cgcccacctt ctagagttcc tcataaactt gttaaagtga actataagtc 1381 taacctcgtt cctataactg cttctaatag tgtgtccgag cttttaagtc tacatgatga 1441 gacgcaagta acagaatgtg tagaagctcc attaattgct aaatcaccag acataacagt 1501 ttatgaaaaa atgttttctg ttagaccaaa acatacttta actaaattag aaggtaaaca 1561 aaaaatgttt actagaaaaa agaaaggatc ttttgttaaa atagggagca atatgttaga 1621 atttggagag tcactcaagt caaagcttca caatgactct aaaaagtcac ctgatgaacc 1681 agatgggctt gtacatgtac cagtacacct attataccct cctaagcatc aagatccagt 1741 gccagcattt tttatttttc tagaaggttc tattggtgtc ggaaaaacta cccttttaaa 1801 gtctatgaat ggaatacttg gcggtaagaa tgtattggcg tttcacgagc ccattgctta 1861 ttggacagat gtgttttcta acagtttaga agaagtatac aaactaactt tacctgcaaa 1921 ggtgggccgc acttctaatt ctgctaagct tttagcatgt caactcaagt ttgcttcccc 1981 actcttagct cttaaaactg caactgaccg tctctcaagc cctaaaaatt ctcttttgtc 2041 ttcagacatg tgggtaatgt ttgacaggca cccgttatca gcaactgttg tatttccata 2101 catgcacttt cagaatgggt ttttatcatt tagtcatcta atacagcttt ggagctcgtt 2161 taaagcttca cgaggagata atataatact tttaaattta aacagtcaag aaaatcttaa 2221 aagagtcaaa aaaagaaaca gaaaagaaga aaaatctgta tctatagagc atatcagact 2281 gcttaacaac tgttatcatg cagtttattg cgcttggcta ttagttcaga attttacgcc 2341 tgaagaaatt gtagaagtct gttttaatgc aaaacacata acagatctaa gttcctcaaa 2401 gccttctttt ttagcaaaac atgtttctac agaagatatg ctcaaaagta gcatatttaa 2461 tacgtggata gaaatgacta aagcccacag agacagctgc acattaatgg aatgtctgtt 2521 aacattttgt aaagaacttg aaaaagttca attaatacat gttaacgtgt caccatttac 2581 tgatgacatt ccaggacttt gggcaagcat ttacactagt ataagaagaa atagtgctat 2641 caaaccaaat agagtcaact ggctagctct tgaagactta gctcgcacat ttaactctca 2701 atgacaattt tacagctgtt tttagttttt ttaaatattt tagaagcatt atgtgattat 2761 cagttaccta agcctagaat aaataaacct cctgcagaag aaaggctaaa actgcgcaat 2821 ggatacaaca ctactttaat tgagtttgat gatggagttc aatcttttaa cttaaactgg //