GenBank-Updates@genbank.bio.net (03/05/91)
LOCUS HSSTK 2880 bp ds-DNA VRL 05-MAR-1991
DEFINITION Herpesvirus saimiri thymidine kinase (TK) gene, complete cds; and
glycoprotein H gene, 5' end.
ACCESSION D00543
KEYWORDS glycoprotein H; thymidine kinase.
SOURCE Herpesvirus saimiri (strain 11[Onc]), viral light (L)DNA, clone
pKK102.
ORGANISM Herpesvirus saimiri
Viridae; ds-DNA enveloped viruses; Herpesviridae;
Gammaherpesviridae.
REFERENCE 1 (bases 1 to 2880)
AUTHORS Honess,R.W., Craxton,M.A., Williams,L. and Gompels,U.A.
TITLE A comparative analysis of the sequence of the thymidine kinase gene
of a gammaherpesvirus, herpesvirus saimiri
JOURNAL J. Gen. Virol. 70, 3003-3013 (1989)
STANDARD full staff_entry
COMMENT This region is very compact, using overlapping coding sequences and
with nucleotides shared by initiation and termination codons of
neighbouring reading frames.
FEATURES Location/Qualifiers
misc_signal 398..403
/note="poly(A) signal"
misc_signal 1045..1050
/note="poly(A) signal"
misc_signal 1066..1071
/note="poly(A) signal"
CDS 1121..2704
/note="thymidine kinase"
misc_signal 1244..1249
/note="poly(A) signal"
misc_signal 1751..1756
/note="poly(A) signal"
misc_signal 2304..2309
/note="poly(A) signal"
CDS 2701..>2880
/note="glycoprotein H"
misc_signal 2778..2783
/note="poly(A) signal"
misc_signal 2782..2787
/note="poly(A) signal"
BASE COUNT 897 a 521 c 531 g 931 t
ORIGIN 1 bp upstream of EcoRI site.
1 gaattctggt aattcaaagt gcctcttaat tctttcggga atactcgtct ctgcatagct
61 atatctgtga gactggaata ccaaggccca taagaaggaa gccactgttg ctggttggtg
121 taaagacttg atacaagttc aatcttgaag ttagattcaa cggtgaatcc gggatcccct
181 ggagctacag taattgtata gacatttgtt ttaaagtttg tgggttgaga ctgggtagtt
241 ggagaaagcg gcttcggagg agaaggaagt agttgtggtg agtcttgaaa cttttccacc
301 atgttttcta ttatttctaa gtctcttgtt attatgctgc ttctttttac atggtcttgc
361 attagcttgt ctagctcgta gttgatcatt gcttttttta tttggtctgt ctctaaattt
421 agaagtctgg ttctgtagag tgaagcattt ttttttgttt ctctcaatga gtttctgtct
481 atatgcagaa tgttctgtgg atgtggagtc caaaaggctg tcccatttaa aaatacgctt
541 gggttttggc gcaagatgta ttttttttct aatttccaca tctgccctag accataaaaa
601 gcaactaagt ttttcttcac ttgtgtgtgt aagatttaca ggaaactttg gggtttctat
661 atgtaatgtt ttaagagtct tttggctctt aaatataaga ataggaagca ctgtccatgc
721 ttgccgtcct aaaggagcat aattatgtat aaagttaact gtgtctgcta gttggcacaa
781 cccctgagac ctttgtgact ttctaatgtc actgattaga tctaagttgc tagtcatgca
841 cgttttaagc tctatgacat agcatattct agtttctccg caacttgtca gcataacaca
901 gtctgctatt ctgtttccaa gactgacttc aaaaaaaagc cgagtttttg ctcgtagagg
961 gcacggatga ctaatgctta aaaatttaaa aatagaagct gatacagtgt acttagctag
1021 ttttttgtaa gtttccaagt gtgctttatt gcctgcaatt tttcttttat ttggaaggtg
1081 tgctaacact tccttgtctc tttgtttaat aacagatagc atgacaggaa gaggacagcc
1141 tccaaaaaag aatgacacct atgactatcc aagaaaacaa ccgccaaaga atggcagtta
1201 tgacaattat gactatccta cgtctacaaa aacgcggtca actaataaac agcgaaaaga
1261 ttcaaactat cctcctagag aaacaatttt tgaaccagat ctagctgctg acccgatata
1321 cagcgtccct cgcccacctt ctagagttcc tcataaactt gttaaagtga actataagtc
1381 taacctcgtt cctataactg cttctaatag tgtgtccgag cttttaagtc tacatgatga
1441 gacgcaagta acagaatgtg tagaagctcc attaattgct aaatcaccag acataacagt
1501 ttatgaaaaa atgttttctg ttagaccaaa acatacttta actaaattag aaggtaaaca
1561 aaaaatgttt actagaaaaa agaaaggatc ttttgttaaa atagggagca atatgttaga
1621 atttggagag tcactcaagt caaagcttca caatgactct aaaaagtcac ctgatgaacc
1681 agatgggctt gtacatgtac cagtacacct attataccct cctaagcatc aagatccagt
1741 gccagcattt tttatttttc tagaaggttc tattggtgtc ggaaaaacta cccttttaaa
1801 gtctatgaat ggaatacttg gcggtaagaa tgtattggcg tttcacgagc ccattgctta
1861 ttggacagat gtgttttcta acagtttaga agaagtatac aaactaactt tacctgcaaa
1921 ggtgggccgc acttctaatt ctgctaagct tttagcatgt caactcaagt ttgcttcccc
1981 actcttagct cttaaaactg caactgaccg tctctcaagc cctaaaaatt ctcttttgtc
2041 ttcagacatg tgggtaatgt ttgacaggca cccgttatca gcaactgttg tatttccata
2101 catgcacttt cagaatgggt ttttatcatt tagtcatcta atacagcttt ggagctcgtt
2161 taaagcttca cgaggagata atataatact tttaaattta aacagtcaag aaaatcttaa
2221 aagagtcaaa aaaagaaaca gaaaagaaga aaaatctgta tctatagagc atatcagact
2281 gcttaacaac tgttatcatg cagtttattg cgcttggcta ttagttcaga attttacgcc
2341 tgaagaaatt gtagaagtct gttttaatgc aaaacacata acagatctaa gttcctcaaa
2401 gccttctttt ttagcaaaac atgtttctac agaagatatg ctcaaaagta gcatatttaa
2461 tacgtggata gaaatgacta aagcccacag agacagctgc acattaatgg aatgtctgtt
2521 aacattttgt aaagaacttg aaaaagttca attaatacat gttaacgtgt caccatttac
2581 tgatgacatt ccaggacttt gggcaagcat ttacactagt ataagaagaa atagtgctat
2641 caaaccaaat agagtcaact ggctagctct tgaagactta gctcgcacat ttaactctca
2701 atgacaattt tacagctgtt tttagttttt ttaaatattt tagaagcatt atgtgattat
2761 cagttaccta agcctagaat aaataaacct cctgcagaag aaaggctaaa actgcgcaat
2821 ggatacaaca ctactttaat tgagtttgat gatggagttc aatcttttaa cttaaactgg
//