GenBank-Updates@genbank.bio.net (03/05/91)
LOCUS MCVRNA3C 1255 bp ss-RNA VRL 05-MAR-1991 DEFINITION Cucumber mosaic virus RNA 3, coat protein gene and flanks. ACCESSION D00462 KEYWORDS coat protein. SOURCE Cucumber mosaic virus (strain C) propagated in Nicotiana tabacum cv. Xanthi, cDNA to viral RNA, clone pC9.9. ORGANISM Cucumber mosaic virus Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Cucumovirus. REFERENCE 1 (bases 1 to 1255) AUTHORS Quemada,H., Kearney,C., Gonsalves,D. and Slightom,J.L. TITLE Nucleotide sequences of the coat protein genes and flanking regions of cucumber mosaic virus strains C and WL RNA 3 JOURNAL J. Gen. Virol. 70, 1065-1073 (1989) STANDARD full staff_entry COMMENT Submitted in computer readable form by H.D. Quemada on 15-Aug-1989. In [J. Gen. Virol. 70, 1065-1073 (1989)], they compare these sequences of C and WL strains to those published for other cucumber mosaic virus strains, and present evidence that C strain belongs to the WT group while WL strain belongs to the S group. FEATURES Location/Qualifiers misc_feature 224..224 /note="start site of subgenomic RNA 4 (putative)" CDS 298..954 /note="coat protein" BASE COUNT 285 a 311 c 298 g 361 t ORIGIN 342 bp upstream of AatII site. 1 cactttggtg cgtattagta tataagtatt tgtgagtctg tacataatac tatatctata 61 gagtcctgtg tgagttgata cagtagacat ctgtgacgcg atgccgtgtt gagaagggat 121 cacatctggt tttagtaagc ctacatcata gttttgaggt tcaattcctc ttactccctg 181 ttgagtacct tactttctca tggatgcttc tccgcgagat tgcgttattg tctactgact 241 atatagagag tgtgtgtgct gtgttttctc ttttgtgtcg tagaattgag tcgagtcatg 301 gacaaatctg aatcaaccag tgctggtcgt aaccatcgac gtcgtccgcg tcgtggttcc 361 cgctccgccc cctcctccgc ggatgctaac tttagagtct tgtcgcagca gctttcgcga 421 cttaataaga cgttagcagc tggtcgtcca actattaacc acccaacctt tgtagggagt 481 gaacgctgta gacctgggta cacgttcaca tctattaccc taaagccacc aaaaatagac 541 cgtgagtctt attacggtaa aaggttgtta ctacctgatt cagtcacgga atatgataag 601 aagcttgttt cgcgcattca aattcgagtt aatcctttgc cgaaatttga ttctaccgtg 661 tgggtgacag tccgtaaagt tcctgcctcc tcggacttat ccgttgccgc catctctgct 721 atgttcgcgg acggagcctc accggtactg gtttatcagt atgccgcatc tggagtccaa 781 gccaacaaca aactgttgtt tgatctttcg gcgatgcgcg ctgatatagg tgacatgaga 841 aagtacgccg tcctcgtgta ttcaaaagac gatgcgctcg agacggacga gctagtactt 901 catgttgaca tcgagcacca acgcattccc acatctggag tgctcccagt ctgattccgt 961 gttcccagaa ccctccctcc gatctctgtg gcgggagctg agttggcagt tctactacaa 1021 actgtctgga gtcactaaac gttttacggt gaacgggttg tccatccagc ttacggctaa 1081 aatggtcagt cgtggagaaa tccacgccag cagatttaca aatctctgag gcgcctttga 1141 aaccatctcc taggtttctt cggaagggct tcggtccgtg tacctctagc gcaacgtgct 1201 agtttcaggg tacgggtgcc cccccacttt cgtgggggcc tccaaaagga gacca //
GenBank-Updates@genbank.bio.net (03/05/91)
LOCUS MCVRNA3WL 1267 bp ss-RNA VRL 05-MAR-1991 DEFINITION Cucumber mosaic virus RNA 3, coat protein gene and flanks. ACCESSION D00463 KEYWORDS coat protein. SOURCE Cucumber mosaic virus (strain WL) propagated in Nicotiana tabacum cv. Xanthi, cDNA to viral RNA, clones pWL3.4.1, pWL3.4.2 and pWL3Z8.1. ORGANISM Cucumber mosaic virus Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Cucumovirus. REFERENCE 1 (bases 1 to 1267) AUTHORS Quemada,H., Kearney,C., Gonsalves,D. and Slightom,J.L. TITLE Nucleotide sequences of the coat protein genes and flanking regions of cucumber mosaic virus strains C and WL RNA 3 JOURNAL J. Gen. Virol. 70, 1065-1073 (1989) STANDARD full staff_entry COMMENT Submitted in computer readable form by H.D. Quemada on 15-Aug-1989. In [J. Gen. Virol. 70, 1065-1073 (1989)], they compare these sequences of C and WL strains to those published for other cucumber mosaic virus strains, and present evidence that C strain belongs to the WT group while WL strain belongs to the S group. FEATURES Location/Qualifiers misc_feature 232..232 /note="start site of subgenomic RNA 4 (putative)" CDS 285..941 /note="coat protein" BASE COUNT 282 a 303 c 299 g 383 t ORIGIN 588 bp upstream of HindIII site. 1 tgttttgtta cgttgtatcc atgtatatat atatcacgtt tatcttccgt atgtaaatac 61 atgtgagtct agagttccgt gtgagttgta acggtagaca tctgtgacgc gaagccgctt 121 gaagacttcc catctggggt tagtaagtcc acatcacagt tttaagattc aattcctttt 181 gctccctgtt gggcccctta ctttctcatg gatgcctctc cgcgagttag cgtttagttg 241 ttcacctgag tcgtgtgttt tgtattttgc gtcttagtgt gcctatggac aaatctggat 301 ctcccaatgc tagtagaacc tcccggcgtc gtcgcccgcg tagaggttct cggtccgctt 361 ctggtgcgga tgcagggttg cgtgctttga ctcagcagat gctgaaactc aatagaaccc 421 tcgccattgg tcgtcccact cttaaccacc caaccttcgt gggtagtgaa agctgtaaac 481 ccggttacac tttcacatct attaccctga aaccgcctga aattgagaaa ggttcatatt 541 ttggtagaag gttgtctttg ccagattcag tcacggacta tgataagaag cttgtttcgc 601 gcattcaaat cagggttaat cctttgccga aatttgattc taccgtgtgg gttacagttc 661 ggaaagtacc ttcatcatcc gatctttccg tcgccgccat ctctgctatg tttggcgatg 721 gtaattcacc ggttttggtt tatcagtatg ctgcgtccgg agttcaggcc aacaataagt 781 tactttatga cctgtccgag atgcgtgctg atatcggcga catgcgtaag tacgccgtcc 841 tggtttactc gaaagacgat aaactagaga aggacgagat tgcacttcat gtcgacgtcg 901 agcatcaacg aattcctatc tcacggatgc tcccgactta gtccgtgtgt ttaccggcgt 961 ccgagaacgt taaactacac tctcaatcgc gagtgctgac ttggtagtat tgcttcaaac 1021 tgcctgaagt ccctaaacgt gttgttgcgc ggggaacggg tgtccatcca gcttacggct 1081 aaaatggtcg tgtctttcac acgccgatgt cttacaagat gtcgagatac ccttgaaatc 1141 atctcctaga tttcttcgga agggcttcgt gagaagctcg tgcacggtaa tacacttgat 1201 attaccaaga gtgcgggtat cgcctgtggt tttccacagg ttctccaggt tctccataag 1261 gagacca //