GenBank-Updates@genbank.bio.net (03/05/91)
LOCUS MCVRNA3C 1255 bp ss-RNA VRL 05-MAR-1991
DEFINITION Cucumber mosaic virus RNA 3, coat protein gene and flanks.
ACCESSION D00462
KEYWORDS coat protein.
SOURCE Cucumber mosaic virus (strain C) propagated in Nicotiana tabacum
cv. Xanthi, cDNA to viral RNA, clone pC9.9.
ORGANISM Cucumber mosaic virus
Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses;
Cucumovirus.
REFERENCE 1 (bases 1 to 1255)
AUTHORS Quemada,H., Kearney,C., Gonsalves,D. and Slightom,J.L.
TITLE Nucleotide sequences of the coat protein genes and flanking regions
of cucumber mosaic virus strains C and WL RNA 3
JOURNAL J. Gen. Virol. 70, 1065-1073 (1989)
STANDARD full staff_entry
COMMENT Submitted in computer readable form by H.D. Quemada on 15-Aug-1989.
In [J. Gen. Virol. 70, 1065-1073 (1989)], they compare these
sequences of C and WL strains to those
published for other cucumber mosaic virus strains, and present
evidence that C strain belongs to the WT group while WL strain
belongs to the S group.
FEATURES Location/Qualifiers
misc_feature 224..224
/note="start site of subgenomic RNA 4 (putative)"
CDS 298..954
/note="coat protein"
BASE COUNT 285 a 311 c 298 g 361 t
ORIGIN 342 bp upstream of AatII site.
1 cactttggtg cgtattagta tataagtatt tgtgagtctg tacataatac tatatctata
61 gagtcctgtg tgagttgata cagtagacat ctgtgacgcg atgccgtgtt gagaagggat
121 cacatctggt tttagtaagc ctacatcata gttttgaggt tcaattcctc ttactccctg
181 ttgagtacct tactttctca tggatgcttc tccgcgagat tgcgttattg tctactgact
241 atatagagag tgtgtgtgct gtgttttctc ttttgtgtcg tagaattgag tcgagtcatg
301 gacaaatctg aatcaaccag tgctggtcgt aaccatcgac gtcgtccgcg tcgtggttcc
361 cgctccgccc cctcctccgc ggatgctaac tttagagtct tgtcgcagca gctttcgcga
421 cttaataaga cgttagcagc tggtcgtcca actattaacc acccaacctt tgtagggagt
481 gaacgctgta gacctgggta cacgttcaca tctattaccc taaagccacc aaaaatagac
541 cgtgagtctt attacggtaa aaggttgtta ctacctgatt cagtcacgga atatgataag
601 aagcttgttt cgcgcattca aattcgagtt aatcctttgc cgaaatttga ttctaccgtg
661 tgggtgacag tccgtaaagt tcctgcctcc tcggacttat ccgttgccgc catctctgct
721 atgttcgcgg acggagcctc accggtactg gtttatcagt atgccgcatc tggagtccaa
781 gccaacaaca aactgttgtt tgatctttcg gcgatgcgcg ctgatatagg tgacatgaga
841 aagtacgccg tcctcgtgta ttcaaaagac gatgcgctcg agacggacga gctagtactt
901 catgttgaca tcgagcacca acgcattccc acatctggag tgctcccagt ctgattccgt
961 gttcccagaa ccctccctcc gatctctgtg gcgggagctg agttggcagt tctactacaa
1021 actgtctgga gtcactaaac gttttacggt gaacgggttg tccatccagc ttacggctaa
1081 aatggtcagt cgtggagaaa tccacgccag cagatttaca aatctctgag gcgcctttga
1141 aaccatctcc taggtttctt cggaagggct tcggtccgtg tacctctagc gcaacgtgct
1201 agtttcaggg tacgggtgcc cccccacttt cgtgggggcc tccaaaagga gacca
//GenBank-Updates@genbank.bio.net (03/05/91)
LOCUS MCVRNA3WL 1267 bp ss-RNA VRL 05-MAR-1991
DEFINITION Cucumber mosaic virus RNA 3, coat protein gene and flanks.
ACCESSION D00463
KEYWORDS coat protein.
SOURCE Cucumber mosaic virus (strain WL) propagated in Nicotiana tabacum
cv. Xanthi, cDNA to viral RNA, clones pWL3.4.1, pWL3.4.2 and
pWL3Z8.1.
ORGANISM Cucumber mosaic virus
Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses;
Cucumovirus.
REFERENCE 1 (bases 1 to 1267)
AUTHORS Quemada,H., Kearney,C., Gonsalves,D. and Slightom,J.L.
TITLE Nucleotide sequences of the coat protein genes and flanking regions
of cucumber mosaic virus strains C and WL RNA 3
JOURNAL J. Gen. Virol. 70, 1065-1073 (1989)
STANDARD full staff_entry
COMMENT Submitted in computer readable form by H.D. Quemada on 15-Aug-1989.
In [J. Gen. Virol. 70, 1065-1073 (1989)], they compare these
sequences of C and WL strains to those
published for other cucumber mosaic virus strains, and present
evidence that C strain belongs to the WT group while WL strain
belongs to the S group.
FEATURES Location/Qualifiers
misc_feature 232..232
/note="start site of subgenomic RNA 4 (putative)"
CDS 285..941
/note="coat protein"
BASE COUNT 282 a 303 c 299 g 383 t
ORIGIN 588 bp upstream of HindIII site.
1 tgttttgtta cgttgtatcc atgtatatat atatcacgtt tatcttccgt atgtaaatac
61 atgtgagtct agagttccgt gtgagttgta acggtagaca tctgtgacgc gaagccgctt
121 gaagacttcc catctggggt tagtaagtcc acatcacagt tttaagattc aattcctttt
181 gctccctgtt gggcccctta ctttctcatg gatgcctctc cgcgagttag cgtttagttg
241 ttcacctgag tcgtgtgttt tgtattttgc gtcttagtgt gcctatggac aaatctggat
301 ctcccaatgc tagtagaacc tcccggcgtc gtcgcccgcg tagaggttct cggtccgctt
361 ctggtgcgga tgcagggttg cgtgctttga ctcagcagat gctgaaactc aatagaaccc
421 tcgccattgg tcgtcccact cttaaccacc caaccttcgt gggtagtgaa agctgtaaac
481 ccggttacac tttcacatct attaccctga aaccgcctga aattgagaaa ggttcatatt
541 ttggtagaag gttgtctttg ccagattcag tcacggacta tgataagaag cttgtttcgc
601 gcattcaaat cagggttaat cctttgccga aatttgattc taccgtgtgg gttacagttc
661 ggaaagtacc ttcatcatcc gatctttccg tcgccgccat ctctgctatg tttggcgatg
721 gtaattcacc ggttttggtt tatcagtatg ctgcgtccgg agttcaggcc aacaataagt
781 tactttatga cctgtccgag atgcgtgctg atatcggcga catgcgtaag tacgccgtcc
841 tggtttactc gaaagacgat aaactagaga aggacgagat tgcacttcat gtcgacgtcg
901 agcatcaacg aattcctatc tcacggatgc tcccgactta gtccgtgtgt ttaccggcgt
961 ccgagaacgt taaactacac tctcaatcgc gagtgctgac ttggtagtat tgcttcaaac
1021 tgcctgaagt ccctaaacgt gttgttgcgc ggggaacggg tgtccatcca gcttacggct
1081 aaaatggtcg tgtctttcac acgccgatgt cttacaagat gtcgagatac ccttgaaatc
1141 atctcctaga tttcttcgga agggcttcgt gagaagctcg tgcacggtaa tacacttgat
1201 attaccaaga gtgcgggtat cgcctgtggt tttccacagg ttctccaggt tctccataag
1261 gagacca
//