GenBank-Updates@genbank.bio.net (03/05/91)
LOCUS NPOHIM 4200 bp ds-DNA VRL 05-MAR-1991 DEFINITION Orgyia pseudotsugata polyhedrosis virus HindIII M region. ACCESSION D00508 KEYWORDS . SOURCE Orgyia pseudotsugata polyhedrosis virus DNA. ORGANISM Orgyia pseudotsugata polyhedrosis virus Viridae; ds-DNA enveloped viruses; Baculoviridae; Baculovirus; Nuclear polyhedrosis viruses. REFERENCE 1 (bases 1 to 4200) AUTHORS Gombart,A.F., Blissard,G.W. and Rohrmann,G.F. TITLE Characterization of the genomic organization of the HindIII M region of the multicapsid nuclear polyhedrosis virus of Orgyia pseudotsugata reveals major differences among baculoviruses JOURNAL J. Gen. Virol. 70, 1815-1828 (1989) STANDARD full staff_entry COMMENT The transcription initiation sites were determined by primer extension analysis. FEATURES Location/Qualifiers misc_signal 34..38 /note="putative promoter element" CDS 51..629 /note="ORF1" misc_signal 622..626 /note="putative promoter element" misc_feature 624..625 /note="mRNA start site" CDS 641..952 /note="ORF2" misc_feature 753..753 /note="mRNA start site" misc_feature 772..772 /note="mRNA start site" misc_feature 874..875 /note="mRNA start site" misc_feature 948..949 /note="mRNA start site" misc_signal 949..953 /note="putative promoter element" misc_feature 953..953 /note="mRNA start site" misc_feature 957..958 /note="mRNA start site" CDS 995..1888 /note="ORF3" misc_feature 1593..1593 /note="mRNA start site" misc_feature 1614..1614 /note="mRNA start site" misc_feature 1792..1793 /note="mRNA start site" misc_signal 1853..1857 /note="putative promoter element" misc_feature 1854..1855 /note="mRNA start site" CDS 1890..2576 /note="ORF4" misc_signal 2406..2410 /note="putative promoter element" misc_feature 2583..2584 /note="mRNA start site" CDS 2591..3865 /note="ORF5" misc_signal 3842..3847 /note="polyA signal" misc_feature 3900..3903 /note="mRNA termination site" CDS 4085..>4200 /note="p26, amino terminus" BASE COUNT 1006 a 1218 c 1160 g 816 t ORIGIN 3 bp upstream of HincII site. 1 gttaacaaaa cttaatactt tctccgccct aatgtaagac ggacattgac atggcgaacg 61 ccgattcgct cgacgcccgc gcgttcagtt acgcccccga cgccagcttt gaagtgatta 121 taatcacaaa cgcgcccaac gaccacgacg ggtatctgga gctgaacgcc gcggcacgct 181 tgttggcgcc gtttcaaaaa aacatatccg ccctatggac aagcgcggcg ccgtcgcaca 241 agcttgttag aaacaacaaa aactatctgc acgtttttgg gctgtttaaa tatttgcaaa 301 actacaattt caacgctaaa ccgcacccgc ccgaatacta cactgtgaaa tcggtaattt 361 gcgaccttat agcgggcgcg cagggcaaaa cgtttgaccc gctgtgtgag atcaagacgc 421 aactgtgcgc cattcaagaa agcctgaacg aggcaatagt gacgttgaac agccacgcga 481 ccgccgagcc cgcgcccggt gcgccttgcg acgcgcgcga gttggtcgaa acgctgcatt 541 cggaatacag ccaaaagctg acgtttgcta ccgacaccat tctggacaac gtgaaaagca 601 tcaaggacct ggtgtgcctc aataagtgaa aattttagcc atgaattttt gggcggcttt 661 tagcgcgtgc ttggtggggt acctggtcta ctcgggccgc ttgaacggcg aactgcagga 721 gatcaaatct attctaataa tagcgtacga ggcggcggac aagcgttaca ggggcgtgat 781 cgacgaaatt gagtcgctca aaacggacac gtttatgatg ttgtcgaact tgcaaaacaa 841 cacaattcgc acgtgggacg ccgttgcgaa aaacggcaaa aaaattgcca atttggacga 901 gcgcgtcaac gggctgctgg ccaagcacgc ggtgcccgcg ctcgtgagat aagttattat 961 caaaactttg gctgcagcta caatatcaca caatatgacg cccaacaaca acgtaatgtt 1021 cgacgacgcg tcggtgatgt ggatcgacgc cgactacatc taccaaaact ccaaaatgcc 1081 gctgtccacg ttccaacagc tgctcttctc cattccgtcc aagcatcgca aaatgatcaa 1141 cgacatcggc aacccggcgt gcaacccgcc gtcgtgctcc tttccgccca gcaacagcac 1201 ggtcaagtac atggtggaca tttacggcgc ggcggtgctg gcgctgcgct gcccgtcgct 1261 gttctccgac cagctgctaa ccacgtttac tgctaacaac tacttgagct actgcaaccg 1321 ccaacggccg tgcccgcagc cgccgtgccc gcagccgccc ttcgactgcg cgcaaaccca 1381 aatcctggac gcgttggaaa aactggcgcg ccagagcgac ctggtcgtga acagcctcaa 1441 ccagatctca ctgaaccaat ccaaccagtt tttggaactg tccaacacgc tgaacacggt 1501 gcgcgcccaa aacgcgcaga tcttggcggc gctggaaacc accaaagacg caatcttgac 1561 gcgcctcaac gcgttggtgg acgacattaa agcggcgctg cccgaccaat ccgcccaact 1621 gcaagaattg gccgacaagc tgctggacgc aatcaactcg gtcgcgcaaa cgcttcgcgg 1681 cgaaatgaac aacaccaatt cgattctaac caatttggcg tccagcatca ccaacatcaa 1741 cagcacgttg aacaacttgc tggccgccat tgagggtata ggcggcgacg gcggcggtct 1801 tggcgacgca gataggcaag cgctaaacga ggtgctcagc ctggtcaccg aaataagaaa 1861 cattttgatg ggcaccgctc gcaagtagca tgcccagaga cacgaaaccg tacagccggc 1921 cggccaacgc gccgcgcccg ggcgttaaaa ccgagcgctc aaaccagttt aaagcggcgt 1981 caaccaaata cggcaaacgc gtcaacgacg cgaacaagga aacgcgcccc gtggcgttcg 2041 tggacatcaa gctcaaccac cgcgccacgc ccgaaatgga gcaacggatg caggccgtgt 2101 acgcgcggca aaagccgtcc atattcaaca aatccgccgt agcagagttc attaaaaatc 2161 gcacgtttgt ggtggcgttt gcgcacccca cgtacacgat acagtttaac aaaattccca 2221 ccgtcgacca gctgcgtgtc tattgttcca acattaacaa ggacttgttg ttcaaagata 2281 aaaaccaaca aatgcgaaac gcgctgccca acgcggcgtc atttcgcgtg caaattaacg 2341 acgagccgct gtttaaggtg caaaccgtcg tgtacgacaa agaatccgcc caattggtgt 2401 tgacgataag gtttttgccc agacaaacaa tggagctgct gccgatgaaa aagtgcgttg 2461 tatatctgaa catattgtcg aacgcgtctg tggattgggc agtgccggcg gatttgctgc 2521 gcgcgtttgc caagctggcg ctggcgccgc ccatccccgc gccgcagaac gtttaacgcc 2581 ccgcttagcc atgcacgcgc cgctcaccgc ggagcagcgc gacgtgtacg acaagtacaa 2641 gtttgccacg tacgcgcggt cggtggcgtt gacgcgcgcg cagctcgacc agtggcgcga 2701 caacaaggtt atcgttccgg aacccgtgtc gcgcgcagag acgctgcgcg tggaggccgc 2761 cacgcgcggc cagagcaaga acgcgctgtg gaacctgctg cggctggacc gcagcaccgc 2821 gtcgcgctcg tcgggcggcg tcgcactgcg ctcgtccgcg ctggcgtttg gcaacgcgca 2881 agagaaccgg ctaaagttgg ccaacggaga gctgttcgaa cggctgggcc ggctggccgc 2941 ggagcgcgcg ggctgccccg tcgccgagac ggtgctggac tgcggcatgt ttattagcgc 3001 gtttgggctg cactcggcgt cgcccgacgc ctatttcgct atggccgacg gctcgtgcgt 3061 gcccgtggag atcaagtgcc cgttcaacta ccgcgacacc acggtggacc aaatgcgctt 3121 ggagctgggt aaggccaacc gcaagtaccg cgtcaagcac acggcgctgc tcgtcaacaa 3181 ggcgggcccc gcgcaatttg aggtggtcaa gacgcacgac cactatcggc aaatgcaacg 3241 gcagatgtac gtgatgcgca acgcgcccgt gtgtttttac gtggtgcggt ttaaacacaa 3301 cctggtggcg ctggccgtgc cgcgcgacga cgatttttgc cgaaaagaag cggccgcgga 3361 gggcgccgcg ttcgtggctt tcgcaacgga gaacgcgggg cgcgtgcagt ttaagcgcgg 3421 cgaccgccgc cgcgcgtctt ttgcccaaaa cgccgccgac cacggataca acgccgcgca 3481 ggtggacgcg ctggtgcgcc gcggactgta tttgtcgtac gggcagttgc gctgcgggca 3541 ttgcgacgcg tttgcgctgg acggcccgcg ggcgtttgag ctggccatgg cgcgcccaca 3601 cgaacaatgc gacgggctgg cgctgcagga gcacgagttc gacaatgttg cgtttctcga 3661 tttcaccaaa cgctacacca gtttggtcga caagcgctgc gacgacgccc gcgcactgcg 3721 cgtcgacggc ttctacgtgg acgacgccgg cgccgtgaaa accttttgtt gcggcgtgca 3781 cggcagcaat gcgtcacggc gccaccttcc cacgtgttcg tattatttag caatgggtgt 3841 aaataaaata caaaataata tgtgatttat ttattggtaa taattaaaaa ctgtttgcac 3901 aaacttgatt tttatttcgg caagaaccat tcgtccatgt atttgtttga cacgttcgtt 3961 ttgcattcaa ccggtttgca cgcgtcgctg ttttgcgcgc acgcaatcac acatatttgt 4021 cacatcgcta tttaaaagga aacgcggtcg caaaagctca aacgttattt gaaaccggcg 4081 cgcaatgtac ataaagatgg aggttgaatt tgacgaagac acgggcgccc ttcaaatcgg 4141 cggacaagag gtgtttgtaa tggtgttcga gcccggtcaa gaggtttttg acaaaagctt //