GenBank-Updates@genbank.bio.net (03/05/91)
LOCUS PAYP 2241 bp ss-RNA VRL 05-MAR-1991
DEFINITION Papaya ringspot virus nuclear inclusion protein (NIb protein) gene,
coat protein gene and 3' untranslated region.
ACCESSION D00595
KEYWORDS coat protein; nuclear inclusion protein.
SOURCE Papaya ringspot virus (strain P), cDNA to genome RNA, clone PRV117.
ORGANISM Papaya ringspot virus
Viridae; ss-RNA nonenveloped viruses; Rod-shaped ss-RNA viruses;
Potyvirus.
REFERENCE 1 (bases 1 to 2241)
AUTHORS Quemada,H., L'Hostis,B., Gonsalves,D., Reardon,I.M., Heinrikson,R.,
Hiebert,E.L., Sieu,L.C. and Slightom,J.L.
TITLE The nucleotide sequences of the 3'-terminal regions of papaya
ringspot virus strains W and P
JOURNAL J. Gen. Virol. 71, 203-210 (1990)
STANDARD full staff_entry
COMMENT These data kindly submitted in computer readable form by:
Jerry L. Slightom
The Upjohn Company
Molecular Biology Unit 7242
Kalamazoo
MI 49007
U.S.A.
Phone: 616-385-5304
Fax: 616-385-7373
Confirmation of this sequence is provided by amino acid analysis
and partial amino acid sequencing.
FEATURES Location/Qualifiers
CDS <1..2016
/note="polyprotein"
mat_peptide <1..1152
/note="nuclear inclusion protein (NIb protein)"
mat_peptide 1153..2013
/note="coat protein"
BASE COUNT 700 a 403 c 551 g 587 t
ORIGIN 811 bp upstream of HindIII site.
1 cgctgtgagc gtctctacga agggagaatg ggcgtctgga acggttcgct gaaggcagaa
61 ctgagaccag ctgagatagt gctcgcgaaa aagacaaggt catttacagc agcccctctt
121 gacacactat taggagccaa agtctgcgtt gatgatttca acaactggtt ttacagtaag
181 aatatggagt gcccatggac cgtcgggatg acaaaatttt acaaaggctg ggatgagttc
241 ctgaggaaat ttcctgacgg ctgggtgtac tgtgatgcag atggttccca gttcgatagc
301 tcattaacac catacttgtt gaatgctgtg ctatcaattc ggttatgggc gatggaggat
361 tgggatattg gagagcaaat gcttaagaac ttgtatgggg aaatcactta cacgccaata
421 ttgacaccag atggaacaat tgtcaagaaa ttcaagggca ataatagtgg ccaaccttcg
481 acagttgttg ataatacatt aatggtttta atcacaatgt attacgcact acggaaggct
541 ggttacgata cgaagactca agaagatatg tgtgtatttt atatcaatgg tgatgatctc
601 tgtattgcca ttcacccgga tcatgagcat gttcttgact cattctctag ttcatttgct
661 gagcttgggc ttaagtatga tttcgcacaa aggcatcgga ataaacagaa tttgtggttt
721 atgtcgcatc gaggtattct gattgatgac atttacattc caaaacttga acctgagcga
781 attgtcgcaa ttcttgaatg ggacaaatct aagcttccgg agcatcgatt ggaggcaatc
841 acagcggcaa tgatagagtc atggggtcat ggtgatctaa cacaccagat tcgcagattt
901 taccaatggg ttcttgagca agctccattc aatgagttgg cgaaacaagg aagggcccca
961 tacgtctcgg aagttggatt aagaagattg tacacaagtg aacgtggatc aatggacgaa
1021 ttagaagcgt atatagataa atactttgag cgtgagagag gagactcgcc cgaattacta
1081 gtgtaccatg aatcaaggag cactgatgat tatcaacttg tttgtagcaa caatacgcat
1141 gtgtttcatc agtccaagaa tgaagctgtg gatgctggtt tgaatgaaaa actcaaagag
1201 aaggaaaatc agaaagaaaa agaaaaagaa aaacaaaaag agaaagaaaa agacggtgct
1261 agtgacggaa atgatgtgtc aactagcaca aaaactggag agagagatag agatgtcaat
1321 gttgggacca gtggaacttt cactgttccg agaattaaat catttactga taagatggtt
1381 ctaccgagaa ttaaggggaa gactgtcctt aatttaaatc atcttcttca gtacaatccg
1441 caacaaattg acatttctaa cactcgtgcc actcattcac aatttgagaa gtggtatgag
1501 ggagtgagga atgattatgg ccttaatgat aatgaaatgc aagtgatgct aaatggtttg
1561 atggtttggt gtatcgagaa tggtacatct ccagacatat ctggtgtctg ggttatgatg
1621 gatggggaaa cccaagttga ttatccaatc aagcctttga ttgagcatgc tactccgtca
1681 tttaggcaaa ttatggctca ctttagtaac gcggcagaag catacattgc gaagagaaat
1741 gctactgaga ggtacatgcc gcggtatgga atcaagagaa atttgactga cattagcctc
1801 gctagatacg ctttcgactt ctatgaggtg aattcgaaaa cacctgatag ggctcgcgaa
1861 gctcacatgc agatgaaggc tgcagcgctg cgaaacacca gtcgcaaaat gtttggtatg
1921 gacggcagtg ttagtaacaa ggaagaaaac acggagagac acacagtgga agatgtcaat
1981 agagacatgc actctctcct gggtatgcgc aactaaatac ctgcgcttgt gtgtttgttg
2041 agtctgactc gaccctgttt caccttatgg tactatataa gcattagaat acagagtggc
2101 tgcgccaccg cttctatttt acagtgaggg tagccctccg tgcttttagt attattcgag
2161 ttctctgagt ctccatacag tgtgggtggc ccacgtgata ttcgagcctc ttagaatgag
2221 agaaaaaaaa aaaaaaaaaa a
//GenBank-Updates@genbank.bio.net (03/05/91)
LOCUS PAYW 2250 bp ss-RNA VRL 05-MAR-1991
DEFINITION Papaya ringspot virus nuclear inclusion protein (NIb protein) gene,
coat protein gene and 3' untranslated region.
ACCESSION D00594
KEYWORDS coat protein; nuclear inclusion protein.
SOURCE Papaya ringspot virus (strain W), cDNA to genome RNA, clones W1-18,
and W1-77.
ORGANISM Papaya ringspot virus
Viridae; ss-RNA nonenveloped viruses; Rod-shaped ss-RNA viruses;
Potyvirus.
REFERENCE 1 (bases 1 to 2250)
AUTHORS Quemada,H., L'Hostis,B., Gonsalves,D., Reardon,I.M., Heinrikson,R.,
Hiebert,E.L., Sieu,L.C. and Slightom,J.L.
TITLE The nucleotide sequences of the 3'-terminal regions of papaya
ringspot virus strains W and P
JOURNAL J. Gen. Virol. 71, 203-210 (1990)
STANDARD full staff_entry
COMMENT These data kindly submitted in computer readable form by:
Jerry L. Slightom
The Upjohn Company
Molecular Biology Unit 7242
Kalamazoo
MI 49007
U.S.A.
Phone: 616-385-5304
Fax: 616-385-7373
Confirmation of this sequence is provided by amino acid analysis
and partial amino acid sequencing.
FEATURES Location/Qualifiers
CDS <1..2029
/note="polyprotein"
mat_peptide <1..1165
/note="nuclear inclusion protein (NIb protein)"
mat_peptide 1166..2026
/note="coat protein"
BASE COUNT 715 a 400 c 542 g 593 t
ORIGIN 824 bp upstream of HindIII site.
1 tcttgtacgg aaaagctgtg agcgtctcta cgaagggaga atgggcgttt ggaacggttc
61 gttgaaggca gaactgagac cagctgaaaa agtgctcgcg aaaaagacaa ggtcatttac
121 agcagctcct cttgacacac tattaggagc caaagtctgc gttgatgatt ttaacaactg
181 gttttacagt aagaatatgg agtgcccatg gaccgtcgga atgacaaaat tttacaaagg
241 ctgggacgag ttcctgagga aatttcctga cggctgggtg tactgtgatg cagatggttc
301 ccagttcgat agctcattaa caccatactt gttgaatgct gtgctatcaa ttcggttatg
361 ggcgatggag gattgggata ttggagagca aatgcttaag aacttgtatg gggaaatcac
421 ttacacgcca atattgacac cagatggaac aattgtcaag aaattcaagg gcaataatag
481 tggccaacct tcgacagttg ttgataatac attgatggtt ttaatcacaa tgtattacgc
541 actacggaag gctggttacg atacgaagac tcaagaagat atgtgtgtat tttatatcaa
601 tggtgatgat ctctgtattg ccattcaccc ggatcatgag catgttcttg actcattctc
661 tagatcgttt gctgagcttg ggcttaagta tgatttcaca caaaggcatc ggaataaaca
721 gaatttgtgg tttatgtcgc atcgaggtat tctgattgat gacatttaca ttccaaaact
781 tgaacctgag cgaattgtcg caattcttga atgggacaaa tctaagcttc cggagcatcg
841 attggaagca atcacagcgg caatgataga gtcatggggt tatggtgatc taacacacca
901 gattcgcaga ttttaccaat gggttcttga gcaagctcca ttcaatgagt tggcgaaaca
961 aggaagggcc ccatacgtct cggaagttgg attaagaaga ttgtacacaa gtgaacgtgg
1021 atcaatggat gaattagaag cgtatataga taaatacttt gagcgtgaga gaggagactc
1081 acccgaatta ctagtgtacc atgaatcaag gagcactgat gattatcaac ttgtttgcag
1141 taacaataca catgtgtttc atcagtccaa aaatgaagct gtggatactg gtttgaatga
1201 aaaattcaaa gaaaaggaaa aacagaaaga aaaagaaaaa gaaaaacaaa aagagaaaga
1261 aaaagacgat gctagtgacg gaaatgatgt gtcaactagc acaaaaactg gagagagaga
1321 tagagatgtc aatgttggga ccagtggaac tttcactgtt ccgagaatta aatcatttac
1381 tgataagatg attctaccga gaattaaggg aaagtctgtc cttaatttaa atcacctact
1441 tcagtataat ccgcaacaaa ttgacatttc taacactcgt gccactcagt cacaatttga
1501 gaagtggtat gagggagtga ggaatgatta tggccttaat gataatgaaa tgcaagtgat
1561 gctaaatggt ttgatggttt ggtgtatcga gaatggtaca tctccagaca tatctggtgt
1621 ctgggttatg atggatgggg aaacccaagt tgattatcca atcaagcctt taattgagca
1681 tgctactccg tcatttaggc aaattatggc tcactttagt aacgcggcag aagcatacat
1741 tgcgaaaaga aatgctactg agaggtacat gccgcggtat ggaatcaaga gaaatttgac
1801 tgacattagc ctcgctagat acgctttcga cttctatgag gtgaattcga aaacacctga
1861 tagggctcgc gaagcccaca tgcagatgaa ggctgcagca ctgcgaaaca ctagtcgcag
1921 aatgtttggt atggacggca gtgttagtaa caaggaagaa aacacggaga gacacacagt
1981 ggaagacgtc aatagagaca tgcactctct cctgggtatg cgcaactaaa tacttgcgct
2041 tgtgtgtttg tcgagcttga ctcgaccctg tttcacctta tagtactata taagcattag
2101 aatacagtgt ggctgcgcca ccgcttctat tttacagtga gggtagccct ccgtgctttt
2161 agtattattc gagttctctg agtctccata cagtgtgggt ggcccacgtg ctattcgagc
2221 ctcttagaat gagagaaaaa aaaaaaaaaa
//