GenBank-Updates@genbank.bio.net (03/05/91)
LOCUS PLVGR 5987 bp ss-RNA VRL 05-MAR-1991 DEFINITION Potato leafroll luteovirus genomic RNA. ACCESSION D00530 X14600 KEYWORDS RNA-dependent RNA polymerase; coat protein; readthrough.. SOURCE Potato leafroll luteovirus (strain 1, a field isolate obtained from infected tubers of the potato variety Cara grown in Scotland), cDNA to viral RNA. ORGANISM Potato leaf roll virus Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Luteovirus. REFERENCE 1 (bases 1 to 5987) AUTHORS Mayo,M.A., Robinson,D.J., Jolly,C.A. and Hyman,L. TITLE Nucleotide sequence of potato leafroll luteovirus RNA JOURNAL J. Gen. Virol. 70, 1037-1051 (1989) STANDARD full staff_entry COMMENT Submitted in computer readable form by M. A. Mayo on 24-Jan-1990. In [J. Gen. Virol. 70, 1037-1051 (1989)], they suggested that the viral polymerase was translated by frameshift readthrough near the end of the 70K polypeptide, and 53K protein was translated by readthrough of the amber termination codon of the coat protein gene. In the sequence, 5' end may not be the extreme end (discussed in [J. Gen. Virol. 70, 1037-1051 (1989)]). FEATURES Location/Qualifiers CDS <1645..3495 /note="ORF2b (put. RNA-dependent RNA polymerase) (see comment)" CDS <4320..5846 /note="ORF5 (53K protein) (see comment)" virion 1..5987 /note="potato leafroll luteovirus genome RNA (see comment)" CDS 175..918 /note="ORF1 (28K protein)" CDS 308..2227 /note="ORF2a (70K protein)" variation 479..479 /note="t in cloned cDNA from first RNA preparation ( first clones); c in cloned cDNA from second RNA preparation (second clones)" variation 521..521 /note="c in first clones; t in second clones" variation 571..571 /note="c in first clones; t in second clones" variation 937..937 /note="c in first clones; t in second clones" variation 1474..1474 /note="g in first clones; a in second clones" variation 1611..1611 /note="a in first clones; g in second clones" variation 1755..1755 /note="t in first clones; c in second clones" variation 1774..1774 /note="t in first clones; c in second clones" variation 1969..1969 /note="g in first clones; a in second clones" variation 2004..2004 /note="g in first clones; a in second clones" variation 2020..2020 /note="a in first clones; g in second clones" variation 2031..2031 /note="c in first clones; t in second clones" variation 2083..2083 /note="c in first clones; a in second clones" variation 2085..2085 /note="c in first clones; t in second clones" variation 2118..2118 /note="c in first clones; a in second clones" variation 2125..2125 /note="c in first clones; a in second clones" variation 2169..2169 /note="t in first clones; g in second clones" variation 2470..2470 /note="g in first clones; a in second clones" variation 2565..2565 /note="g in first clones; a in second clones" variation 2583..2583 /note="g in first clones; a in second clones" variation 2586..2586 /note="a in first clones; g in second clones" variation 2649..2649 /note="c in first clones; t in second clones" variation 2898..2898 /note="t in first clones; c in second clones" variation 3000..3000 /note="t in first clones; c in second clones" variation 3009..3009 /note="t in first clones; c in second clones" variation 3186..3186 /note="t in first clones; c in second clones" variation 3282..3282 /note="c in first clones; t in second clones" variation 3525..3525 /note="a in first clones; g in second clones" variation 3572..3572 /note="t in first clones; a in second clones" CDS 3693..4319 /note="ORF3 (put. coat protein)" CDS 3718..4188 /note="ORF4 (17K protein)" variation 3748..3748 /note="t in first clones; g in second clones" variation 3930..3930 /note="g in first clones; a in second clones" variation 3939..3939 /note="a in first clones; t in second clones" variation 4501..4501 /note="t in first clones; g in second clones" variation 4510..4510 /note="g in first clones; c in second clones" variation 4511..4511 /note="t in first clones; a in second clones" variation 4697..4697 /note="t in first clones; c in second clones" variation 4817..4817 /note="t in first clones; c in second clones" variation 4883..4883 /note="c in first clones; t in second clones" variation 4886..4886 /note="t in first clones; c in second clones" variation 4895..4895 /note="t in first clones; c in second clones" variation 4898..4898 /note="c in first clones; t in second clones" variation 5038..5038 /note="c in first clones; t in second clones" variation 5042..5042 /note="g in first clones; a in second clones" variation 5071..5071 /note="a in first clones; g in second clones" variation 5199..5199 /note="c in first clones; t in second clones" variation 5215..5215 /note="g in first clones; a in second clones" variation 5247..5247 /note="t in first clones; c in second clones" variation 5339..5339 /note="c in first clones; t in second clones" variation 5341..5341 /note="c in first clones; t in second clones" variation 5352..5352 /note="t in first clones; c in second clones" variation 5393..5393 /note="c in first clones; t in second clones" variation 5426..5426 /note="t in first clones; c in second clones" variation 5477..5477 /note="c in first clones; t in second clones" variation 5490..5490 /note="a in first clones; g in second clones" variation 5495..5495 /note="t in first clones; c in second clones" variation 5511..5511 /note="a in first clones; t in second clones" variation 5741..5741 /note="t in first clones; g in second clones" variation 5767..5767 /note="c in first clones; t in second clones" BASE COUNT 1665 a 1514 c 1447 g 1361 t ORIGIN 5' end of viral RNA. 1 ctttatgata ctatgcaaat tgtgctacca gaaatccgta cagtatgcgt aggattagcc 61 gcttcaatgg gatctgttat cctggtcgga ggagaaatta ccaaacgtct agcattcccg 121 agaaattgca gctttagcgc ataaactcta cactcattgc aaacgttata gcatatgatt 181 gtattgaccc agtctggaac cttgcttttt gaccaaagat ttaaactctc aaagtttctc 241 ttcgttgtca ttgcaacagg ctttcctctt ctcctgcagc aagcgagctt aatttacggc 301 tataatcatg aacagattta ccgcatatgc cgctcttttc ttcatgttct ccctttgctc 361 aactgcaaaa gaggcaggat ttctacatcc ggccttcaac ttccgaggca cctccactat 421 gagtgcctcg agtggggatt actctgcggc acccaccccg ctatacaaat cgtgggcctt 481 accatcgtca ttaaacttga cgacccaacc accgccgccg cttacagatc ggagctacta 541 cgagttagtt caagctctta catccaaaat gcggctggat tgtcaaacgg ttggggacat 601 gacatggagg catttgtcag aaatgctatt tgcctcctgg aactccgtga aagaagtatc 661 cctcaaagcg gcctccgtga ccttatgggc aattatcaac atttggttcg gtctctattg 721 gacgcttgca aggttgatca ctttgttcct ctggactttc agcatagaag ccttatgctt 781 aattttgctc ggttgtataa ccagcttgat ctacaagggc gcgctaagtc tttcagagca 841 cttaccggtt ttcctgttta tgtcccctct gaagattatt tggagggcag ctttctccaa 901 aaggaattac aagaatgaga gggctgtgga aggatacaaa gggttttcgg tcccacagaa 961 accgccaaag tctgccgtaa ttgaactaca acatgaaaac ggcagccatc tcgggtacgc 1021 gaactgcatt cgcttgtaca gtggagagaa cgccttggtg acagctgaac actgtctaga 1081 aggcgctttc gcaacgtcgt tgaaaactgg aaacaggatt ccgatgtcga ctttctttcc 1141 cattttcaaa agtgcccgta atgatatctc catactagta ggtccaccca actgggaagg 1201 tctactatca gtcaaaggag ctcatttcat tacagctgac aaaatcggca aaggtcctgc 1261 ctctttctac actcttgaga aaggggagtg gatgtgccat agtgccacca tagatggagc 1321 ccatcaccag ttcgtgtctg ttttatgcaa cactggaccc ggatattccg gaacagggtt 1381 ttggtcttca aagaatctgc ttggtgtgct taaaggcttc ccactggaag aggagtgtaa 1441 ctacaatgtt atgtctgtta taccctcgat cccgggaatc acttccccaa attatgtgtt 1501 tgagtcgacc gccgtaaaag gccgcgtctt ctcggatgaa gctgtgaaag agctagagcg 1561 ggaagcatcc gaagccgtca agaagcttgc cagatttaaa tcacttaccg acaagaactg 1621 ggctgatgat tatgactccg atgaggatta cggtctggag agagaggctg caacaaatgc 1681 gcccgcagag aaaactgctc aaacaaactc agcagagaag actgctccat caacttcagc 1741 agagaaaact gctctaacaa acaagccttt aaatgggcaa gcggcaccgt ccgccaaaac 1801 aaacggcaac tccgacatcc ccgacgccgc tacaagcgca ccaccaatgg acaaaatggt 1861 cgaacagatc atcacagcta tggtggggag aatcaatctc tcggagatag aggagaagat 1921 agtgagcagg gtgtctcaga aagccctgca gaagcccaaa caaaagaagc gcggaaggcg 1981 tggagggaag aacaagcaaa acagtttacc tcctacttca acgcaatcta caagtggggc 2041 gcccaagaag gaggctgccc cccaggcttc aggaagtgcg ggcacatccc gcgctactac 2101 cacccccgca ccagaggcga aacccagtgg gggcaaaaac tctgccaagt tcaccccgag 2161 ctggcggata aaacagcagg attcggctgg ccaaaagccg gatctgaagc tgaactccaa 2221 agcctgaatc tacaggctgc caggtggctc caacgcgcgg agtcagccac tatccctggc 2281 gcggaagcaa gaaagcgcgt gattgagaaa acagttgagg catacagaaa ttgtgtaact 2341 aacgccccac tgtgctccct taaatccaaa ctggattggg ctggctttca acaagatatc 2401 cgtgaagcag tccagtccct tgagctagac gctggtgtag gcattcccta tatcgcgtat 2461 ggcctccccg cacaccgagg atgggttgag gaccataagc ttctcccagt gctcactcag 2521 ctgacctttg accgactaca gaagatgtcg gaggccagct ttgaggatat gagcgcagaa 2581 gagctagttc aagaagggct ctgtgatcct atcagactat ttgtcaaagg agagccccac 2641 aaacagagca aactcgatga aggccgctac cgcctcatca tgtctgtttc cttggtggat 2701 caactggtag cccgggttct gttccaaaat cagaacaaaa gggaaatttc cctgtggagg 2761 tctgtgcctt ccaaacccgg ttttggcctt tcaactgaca ctcaaactgc tgaattcttg 2821 gagtgtcttc aaaaggtgtc tggagcgcca tctgtggaag aattgtgtgc aaatcacaag 2881 gagtacacgc gcccaactga ctgttccggt ttcgactggt cagtcgcgta ttggatgctg 2941 gaggatgata tggaggtgag aaatcgcctg acatttaata acacccagct caccaagcgt 3001 cttcgggctg cctggttgaa gtgcatagga aactccgtcc tgtgcctgtc cgatggcact 3061 ttacttgccc aaactgttcc cggtgtgcaa aagagcggaa gttacaatac aagttcctcc 3121 aactctagaa tccgggttat ggctgcctat cactgtggcg ccgactgggc aatggccatg 3181 ggggatgatg ctctcgaagc ccccaactcc gacctggagg agtataaaac actaggtttc 3241 aaagtcgagg taggtcgaga actcgaattc tgttcacaca tcttcagaaa tccgaccctc 3301 gccgttccgg tcaacaccaa caaaatgctt tacaagttga tccatggtta taatccggaa 3361 tgtggcaatc cagaagtgat tcaaaactat ctggctgcag tattctctgt gctgcaggaa 3421 ctccgacacg atcgtgagct cgttgccaag ctccaccagt ggttggttcc gagtgccacc 3481 acaaaagaac actgaaggag ctcactaaaa ctagccaagc atacacgagt tgcaagcatt 3541 ggaagttcaa gcctcgttac atcaaccgga ctaaatagat tataaattct tagcgggatt 3601 tgctttagga ttctcatccg caatcccatt ttcagtagcc ggtttatatt ttgtttacct 3661 aaagatttcc tcccacgtgc gatcaattgt taatgagtac ggtcgtggtt aaaggaaatg 3721 tcaatggtgg tgtacaacaa ccaagaatgc gaagaaggca atcccttcgc aggcgcgcta 3781 acagagttca gccagtggtt atggtcacgg cccctgggca acccaggcgc cgaagacgca 3841 gaagaggagg caatcgccgc tcaagaagaa ctggagttcc ccgaggacga ggctcaagcg 3901 agacattcgt gtttacaaag gacaacctcg tgggcaacac ccaaggaagt ttcaccttcg 3961 ggccgagtct atcagactgt ccggcattca aggatggaat actcaaggcc taccatgagt 4021 ataagatcac aagcatctta cttcagttcg tcagcgaggc ctcttccacc tcctccggtt 4081 ccatcgctta tgagttggac ccccattgca aagtatcatc cctccagtcc tacgtcaaca 4141 agttccaaat tacgaagggc ggcgccaaaa cttatcaagc gcggatgata aacggggtag 4201 aatggcacga ttcttctgag gatcagtgcc ggatactgtg gaagggaaat ggaaaatctt 4261 cagattccgc aggatccttc agagtcacca tcaaggtagc tttgcaaaac cccaaatagg 4321 tagactccgg atcagagcct agtccaagcc cacaaccaac acccactcca actccccaga 4381 agcacgagcg atttattgct tacgttggca tacctatgct aaccattcag gccagggaga 4441 acgacgacca aatcatattg ggttccttag ggagccaaag gatgaaatat atagaggacg 4501 agaaccagaa ttatacaaag tttagttctg agtattactc tcaatcgagc atgcaagccg 4561 tccctatgta ttacttcaat gtcccgaaag ggcaatggtc agtcgacatc agctgcgaag 4621 ggtatcaacc cactagcagc acctcggatc caaaccgggg taggagtgac gggatgatcg 4681 cgtattcaaa cgcggattcc gattattgga atgttggtga agcggatggt gtcaaaattt 4741 cgaagctacg caacgataac acctaccgcc aaggtcaccc agaacttgaa attaactcgt 4801 gtcattttcg cgagggtcaa ctccttgaac gggacgctac aattagcttc cacgttgaag 4861 cgcctactga tgggcgattc ttccttgttg gtcctgccat ccagaaaacc gcaaagtata 4921 actatactat ctcatacggt gactggacgg accgagacat ggaactgggg ctgatcaccg 4981 tggtgcttga tgaacattta gaaggcactg gttcggctaa cagagtgcgg cggcccccac 5041 gggagggcca cacctatatg gcctcgccgc acgaaccgga aggaaaaccg gttggaaata 5101 aaccaaggga cgaaaccccg atacaaacgc aggaaagaca acctgatcaa actccgtctg 5161 acgacgtatc cgatgctggt tcggtaaaca gcggcggccc aactgagtcg ctgcgattgg 5221 agttcggggt aaactcagat agtacctacg atgctacagt cgatggtaca gactggccca 5281 gaattcctcc accaaggcac ccacctgaac ctagagtttc cggcaattca agaactgtca 5341 ctgacttttc ttcgaaagcc gatctattgg agaattggga tgccgaacac ttcgaccctg 5401 gttattccaa agaagatgtc gctgctgcta ctattatagc gcacggcagt attcaagatg 5461 ggcgaagtat gttggagaag agagaggaaa atgtcaagaa caaaacctcc tcctggaagc 5521 ccccgtcact taaagcggtg agcccagcca tagccaaatt gcgctcgatt cgcaaatccc 5581 aaccccttga gggagggacc cttaataaag acgccactga tggtgtctca tctattggca 5641 gtggttctct aacaggtggc acgcttaaga ggaaggcaac tattgaagaa cgtttactgc 5701 agaccttaac aactgaacaa aggctgtggt acgagaattt taagaaaact aaccctccag 5761 ctgctaccca atggctgttt gaatatcagc cacctcccca agtagataga aacatagctg 5821 aaaagccatt ccaagggagg aaatgagtcg actcacgact taaaactgag tgtccgccgg 5881 acattaagcg gaacgaaagc cgaaaggtga ttaggctctc aacgtctgct agagaccgtc 5941 gaaagacgcg actgtgtagc caggatcctc ttacagggtt gtgtagt //