GenBank-Updates@genbank.bio.net (03/05/91)
LOCUS PVYE1 173 bp ss-RNA VRL 05-MAR-1991
DEFINITION Potato virus Y (PVY) genome, 5' end.
ACCESSION D00488
KEYWORDS non-coding region.
SEGMENT 1 of 2
SOURCE Potato virus Y (strain MM) genomic RNA and cDNA to genomic RNA,
clones pZO[177 and 171].
ORGANISM Potato virus Y
Viridae; ss-RNA nonenveloped viruses; Rod-shaped ss-RNA viruses;
Potyvirus.
REFERENCE 1 (bases 1 to 173)
AUTHORS Turpen,T.
TITLE Molecular cloning of a potato virus Y genome: nucleotide sequence
homology in non-coding regions of potyviruses
JOURNAL J. Gen. Virol. 70, 1951-1960 (1989)
STANDARD full staff_entry
COMMENT The 5' end of the RNA genome contains the presumptive site of
covalent linkage to the VPg. The 5' and 3' non-coding regions
contain 72% and 61% A+U nucleotides, respectively.
FEATURES Location/Qualifiers
misc_signal 164..172
/note="plant consensus sequence for translation initiation
sites"
BASE COUNT 64 a 33 c 16 g 60 t
ORIGIN 5' end of PVY genomic RNA.
1 aaattaaaac ataacataca acataaacga aagcaatcaa attttcaagc atttttcttg
61 agctctttga tttttcctgc ataaattaag cactttgatc aacaacatag tctcgatttt
121 aatatttcaa ttgtttccag ttttctctaa tagcactcca aactaaaatg gca
//GenBank-Updates@genbank.bio.net (03/05/91)
LOCUS PVYE2 276 bp ss-RNA VRL 05-MAR-1991
DEFINITION Potato virus Y (PVY) genome, 3' end.
ACCESSION D00489
KEYWORDS coat protein; non-coding region.
SEGMENT 2 of 2
SOURCE Potato virus Y (strain MM) genomic RNA and cDNA to genomic RNA,
clones pZO[171 and 174].
ORGANISM Potato virus Y
Viridae; ss-RNA nonenveloped viruses; Rod-shaped ss-RNA viruses;
Potyvirus.
REFERENCE 1 (bases 1 to 276)
AUTHORS Turpen,T.
TITLE Molecular cloning of a potato virus Y genome: nucleotide sequence
homology in non-coding regions of potyviruses
JOURNAL J. Gen. Virol. 70, 1951-1960 (1989)
STANDARD full staff_entry
COMMENT Submitted in computer readable form by T.H. Turpen on 19-Mar-1990.
The 5' end of the RNA genome contains the presumptive site of
covalent linkage to the VPg. The 5' end 3' non-coding regions
contain 72% and 61% A+U nucleotides, respectively.
FEATURES Location/Qualifiers
CDS <1..9
/note="coat protein"
misc_feature 275..275
/note="poly(A) site"
BASE COUNT 83 a 37 c 63 g 93 t
ORIGIN About 9.2 kb after segment 1.
1 gaaatgtgac tgatgtggtc tctgggatga aatattatta tatgtagtat gcaatatata
61 gtatggcttt tctcgttcca gtctttatat taatgagagt aacttaagta agtaatttgt
121 acttcaagga ttaatcaagg tgactctctg acactctcag tgaggtgact tgtttagtct
181 gagtttactt attgtgagta taaagaatct ctcagaaaac gagagtgact tctagacaca
241 ctctaggagg tgatcgtagt tggcatgaga gagaca
//