GenBank-Updates@genbank.bio.net (03/06/91)
LOCUS ZYMCP 1963 bp ss-RNA VRL 06-MAR-1991
DEFINITION Zucchini yellow mosaic virus, nuclear inclusion protein and coat
protein genes.
ACCESSION D00593
KEYWORDS coat protein; nuclear inclusion protein.
SOURCE Zucchini yellow mosaic virus, cDNA to viral RNA, clone pTYMV.15.
ORGANISM Zucchini yellow mosaic virus
Viridae; ss-RNA nonenveloped viruses; Rod-shaped ss-RNA viruses;
Potyvirus.
REFERENCE 1 (bases 1 to 1963)
AUTHORS Quemada,H., Sieu,L.C., Siemieniak,D.R., Gonsalves,D. and
Slightom,J.L.
TITLE Watermelon mosaic virus II and zucchini yellow mosaic virus:
Cloning of 3'-terminal regions, nucleotide sequence, and phylogenic
comparisons
JOURNAL J. Gen. Virol. (1990) In press
STANDARD full staff_entry
COMMENT These data kindly submitted in computer readable form by:
Jerry L. Slightom
The Upjohn Company
Molecular Biology Unit 7242
Kalamazoo, MI 49007
U.S.A
Phone: 616-385-5304
Fax: 616-385-7373
In the longest ORF, there is a reading frame shift that probably
occurs between position 335 and 345. They suggests that it is most
likely an artifact of the recombinant DNA cloning procedure in [J.
Gen. Virol. (1990) In press].
FEATURES Location/Qualifiers
CDS <346..1733
/note="polyprotein (AA at 3)"
mat_peptide <1..893
/note="nuclear inclusion b"
misc_feature 335..345
/note="reading frame shift region in translation (put.)"
mat_peptide 894..1730
/note="coat protein"
misc_feature 1945..1963
/note="poly(A) stretch"
BASE COUNT 618 a 359 c 465 g 521 t
ORIGIN 512 bp upstream of BglII site.
1 cggttgggca atgacaaaat tttatggtgg ctgggataaa ttgatgaaag cattacctga
61 tggttggtta tattgtcatg ctgatggatc acagtttgat agttcattaa ccccagcctt
121 attgaacgca gttcttataa tcaggtcatt ttatatggag gattggtggg ttggccaaga
181 gatgcttgaa aatctttatg ctgaaattgt gtacactcca attcttgctc cggatggaac
241 aattttcaag aaatttagag gtaacaacag tgggcaaccc tcaacagtgg tggataacac
301 actaatggtt gtgatctcta tttactatgc gtgcatgaaa attcggttgg aattgcgagg
361 aaattgagaa taaacttgtc ttctttgcaa atggagatga tctgatactt gcagtcaaag
421 atgaggatag cggcttactt gataacatgt catcctcttt ttccgaactt ggattaaatt
481 atgatttttc agaacgtaca cacaaaagag aagatctttg gttcatgtcc caccaagcaa
541 tactagttga tggaatgtac attccaaaac tcgagaaaga gagaattgtt tcaattctag
601 agtgggatag aagcaaagaa attatgcacc gaacagaggc gatttgcgct gcaatgattg
661 aggcatgggg gcacactgag cttttgcaag aaatcagaaa gttttaccta tggttcgttg
721 aaaaagaaga agtgcgagaa ttggctgccc tcggaaaagc tccatacata gctgagacag
781 cacttcgtaa gttatatact gacaagggag cggagacaag tgaactggca cgatacctac
841 aagccctcca ccaagatatc ttctttgaac aaggagacac tgtaatgctc caatcaggca
901 ctcaaccaac tgtggcagac gctagagtta caaagaaaga taaagaagat gacaaagggg
961 aaaacaagga tttcacaggc tccggctcag gtgagaaaac agtagtagct gccaagaaag
1021 acaaggatgt gaatgctggt tctcatggga aaattgtgcc gcgtctttcg aagatcacaa
1081 agaaaatgtc attgccacgc gtgaaaggga atgtgatact cgatatcgat catttgctgg
1141 aatataagcc ggatcaaatt gagttataca acacacgagc gtctcatcag caatttgcct
1201 cttggttcaa ccaagttaag acagaatatg atctgaatga tcaacagatg ggagttgtga
1261 tgaacggttt catggtttgg tgtattgaaa atggcacctc acctgacatt aatggagtgt
1321 ggtttatgat ggacggaaat gaacaagttg agtatccttt gaaaccgata gttgaaaatg
1381 caaagccaac gctgcggcaa ataatgcatc atttttcaga tgcagcggag gcatatatag
1441 agatgagaaa tgcagaggca ccatacatgc cgaggtatgg tttgcttcga aacctacggg
1501 ataggagttt agcacgatac gctttcgatt tctatgaagt caattctaaa actcctgaaa
1561 gagcccgtga agctgttgcg cagatgaaag cagcagctct tagcaatgtt tcttcaaggt
1621 tgtttggcct tgatggaaat gttgccacca ctagcgaaga cactgaacgg cacactgcac
1681 gtgatgttaa tagaaacatg cacaccttac taggtgtgaa tacaatgcag taaagggtag
1741 gccgcctacc taggttatcg cttcgctgcc gacgtaattc taatatttac cgctttattt
1801 gatatcttta gatttccaga gtgggcctcc cacctttaaa gcgtagagtt tatgttagtt
1861 gtccaggagt gccgtagtcc tgtcggaagc tttagtgtga gcctctcacg aataagctcg
1921 agattagact ccgtttgcaa gcctaaaaaa aaaaaaaaaa aaa
//