GenBank-Updates@genbank.bio.net (03/06/91)
LOCUS ZYMCP 1963 bp ss-RNA VRL 06-MAR-1991 DEFINITION Zucchini yellow mosaic virus, nuclear inclusion protein and coat protein genes. ACCESSION D00593 KEYWORDS coat protein; nuclear inclusion protein. SOURCE Zucchini yellow mosaic virus, cDNA to viral RNA, clone pTYMV.15. ORGANISM Zucchini yellow mosaic virus Viridae; ss-RNA nonenveloped viruses; Rod-shaped ss-RNA viruses; Potyvirus. REFERENCE 1 (bases 1 to 1963) AUTHORS Quemada,H., Sieu,L.C., Siemieniak,D.R., Gonsalves,D. and Slightom,J.L. TITLE Watermelon mosaic virus II and zucchini yellow mosaic virus: Cloning of 3'-terminal regions, nucleotide sequence, and phylogenic comparisons JOURNAL J. Gen. Virol. (1990) In press STANDARD full staff_entry COMMENT These data kindly submitted in computer readable form by: Jerry L. Slightom The Upjohn Company Molecular Biology Unit 7242 Kalamazoo, MI 49007 U.S.A Phone: 616-385-5304 Fax: 616-385-7373 In the longest ORF, there is a reading frame shift that probably occurs between position 335 and 345. They suggests that it is most likely an artifact of the recombinant DNA cloning procedure in [J. Gen. Virol. (1990) In press]. FEATURES Location/Qualifiers CDS <346..1733 /note="polyprotein (AA at 3)" mat_peptide <1..893 /note="nuclear inclusion b" misc_feature 335..345 /note="reading frame shift region in translation (put.)" mat_peptide 894..1730 /note="coat protein" misc_feature 1945..1963 /note="poly(A) stretch" BASE COUNT 618 a 359 c 465 g 521 t ORIGIN 512 bp upstream of BglII site. 1 cggttgggca atgacaaaat tttatggtgg ctgggataaa ttgatgaaag cattacctga 61 tggttggtta tattgtcatg ctgatggatc acagtttgat agttcattaa ccccagcctt 121 attgaacgca gttcttataa tcaggtcatt ttatatggag gattggtggg ttggccaaga 181 gatgcttgaa aatctttatg ctgaaattgt gtacactcca attcttgctc cggatggaac 241 aattttcaag aaatttagag gtaacaacag tgggcaaccc tcaacagtgg tggataacac 301 actaatggtt gtgatctcta tttactatgc gtgcatgaaa attcggttgg aattgcgagg 361 aaattgagaa taaacttgtc ttctttgcaa atggagatga tctgatactt gcagtcaaag 421 atgaggatag cggcttactt gataacatgt catcctcttt ttccgaactt ggattaaatt 481 atgatttttc agaacgtaca cacaaaagag aagatctttg gttcatgtcc caccaagcaa 541 tactagttga tggaatgtac attccaaaac tcgagaaaga gagaattgtt tcaattctag 601 agtgggatag aagcaaagaa attatgcacc gaacagaggc gatttgcgct gcaatgattg 661 aggcatgggg gcacactgag cttttgcaag aaatcagaaa gttttaccta tggttcgttg 721 aaaaagaaga agtgcgagaa ttggctgccc tcggaaaagc tccatacata gctgagacag 781 cacttcgtaa gttatatact gacaagggag cggagacaag tgaactggca cgatacctac 841 aagccctcca ccaagatatc ttctttgaac aaggagacac tgtaatgctc caatcaggca 901 ctcaaccaac tgtggcagac gctagagtta caaagaaaga taaagaagat gacaaagggg 961 aaaacaagga tttcacaggc tccggctcag gtgagaaaac agtagtagct gccaagaaag 1021 acaaggatgt gaatgctggt tctcatggga aaattgtgcc gcgtctttcg aagatcacaa 1081 agaaaatgtc attgccacgc gtgaaaggga atgtgatact cgatatcgat catttgctgg 1141 aatataagcc ggatcaaatt gagttataca acacacgagc gtctcatcag caatttgcct 1201 cttggttcaa ccaagttaag acagaatatg atctgaatga tcaacagatg ggagttgtga 1261 tgaacggttt catggtttgg tgtattgaaa atggcacctc acctgacatt aatggagtgt 1321 ggtttatgat ggacggaaat gaacaagttg agtatccttt gaaaccgata gttgaaaatg 1381 caaagccaac gctgcggcaa ataatgcatc atttttcaga tgcagcggag gcatatatag 1441 agatgagaaa tgcagaggca ccatacatgc cgaggtatgg tttgcttcga aacctacggg 1501 ataggagttt agcacgatac gctttcgatt tctatgaagt caattctaaa actcctgaaa 1561 gagcccgtga agctgttgcg cagatgaaag cagcagctct tagcaatgtt tcttcaaggt 1621 tgtttggcct tgatggaaat gttgccacca ctagcgaaga cactgaacgg cacactgcac 1681 gtgatgttaa tagaaacatg cacaccttac taggtgtgaa tacaatgcag taaagggtag 1741 gccgcctacc taggttatcg cttcgctgcc gacgtaattc taatatttac cgctttattt 1801 gatatcttta gatttccaga gtgggcctcc cacctttaaa gcgtagagtt tatgttagtt 1861 gtccaggagt gccgtagtcc tgtcggaagc tttagtgtga gcctctcacg aataagctcg 1921 agattagact ccgtttgcaa gcctaaaaaa aaaaaaaaaa aaa //