GenBank-Updates@genbank.bio.net (03/07/91)
LOCUS MTYCGA 6362 bp ss-RNA VRL 07-MAR-1991
DEFINITION Kennedya yellow mosaic virus genome, complete sequence.
ACCESSION D00637
KEYWORDS complete genome; overlapping protein; replicase protein; virion
protein.
SOURCE Kennedya yellow mosaic virus, Jervis Bay isolate, cDNA to viral
RNA.
ORGANISM Kennedya yellow mosaic virus
Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses;
Tymovirus.
REFERENCE 1 (sites)
AUTHORS van Belkum,A., Bingkun,J., Rietveld,K., Pleij,C.W. and Bosch,L.
TITLE Structural similarities among valine-accepting tRNA-like structures
in tymoviral RNAs and elongator tRNAs
JOURNAL Biochemistry 26, 1144-1151 (1987)
STANDARD full staff_review
REFERENCE 2 (bases 1 to 6362)
AUTHORS Ding,S., Keese,P. and Gibbs,A.
TITLE The nucleotide sequence of the genomic RNA of kennedya yellow
mosaic tymovirus-Jervis Bay isolate: relationships with potex- and
carlaviruses
JOURNAL J. Gen. Virol. 71, 925-931 (1990)
STANDARD full staff_review
REFERENCE 3 (bases 5666 to 5713)
AUTHORS Ding,S., Howe,J., Keese,P., Mackenzie,A., Meek,D., Osorio-Keese,M.,
Skotnicki,M., Srifah,P., Torronen,M. and Gibbs,A.
TITLE The tymobox, a sequence shared by most tymoviruses: its use in
molecular studies of tymoviruses
JOURNAL Nucleic Acids Res. 18, 1181-1187 (1990)
STANDARD full staff_review
COMMENT
[Biochemistry 26, 1144-1151 (1987)] sites.
These data kindly submitted in computer readable form by:
Shou-wei Ding
Molecular & Evolutionary Systematics
Research School of Biological Sciences
Australian National University
GPO Box 475
Canberra, A.C.T., 2601
Australia
Phone: +61-62-49-4211
Email: shouwei@RSBS.ANU.OZ.AU
Fax: +61-62-49-4437
Telex: AA62219
The 3'-terminal sequence (6261-6362 nt) of the genome reported
in [J. Gen. Virol. 71, 925-931 (1990)] can be folded into a
five-stem secondary structure,
so-called tRNA-like structure.
FEATURES Location/Qualifiers
CDS 79..2340
/note="ORF for overlapping protein"
CDS 86..5710
/note="ORF for replicase protein"
misc_signal 5678..5693
/note="tymobox"
misc_signal 5702..5705
/note="initiation box"
misc_feature 5703..5703
/note="virion protein mRNA start site"
CDS 5711..6277
/note="ORF for virion protein"
variation 6285..6285
/note="c in [J. Gen. Virol. 71, 925-931 (1990)]; t in
[Biochemistry 26, 1144-1151 (1987)]"
variation 6320..6321
/note="tg in [J. Gen. Virol. 71, 925-931 (1990)]; deletion
in [Biochemistry 26, 1144-1151 (1987)]"
variation 6338..6338
/note="t in [J. Gen. Virol. 71, 925-931 (1990)]; tc in
[Biochemistry 26, 1144-1151 (1987)]"
variation 6342..6343
/note="tc in [J. Gen. Virol. 71, 925-931 (1990)]; ct in
[Biochemistry 26, 1144-1151 (1987)]"
variation 6349..6349
/note="c in [J. Gen. Virol. 71, 925-931 (1990)]; cg in
[Biochemistry 26, 1144-1151 (1987)]"
BASE COUNT 1433 a 2508 c 958 g 1463 t
ORIGIN 5' end of viral genome.
1 gtaacattac cagatcagcc ctcttaacag acaactgatc tttcctcaat taatctgtca
61 tctagtttgt gaaaactgat gtcaaatggc tttccaacta gctctcgatg ctctagcgtc
121 gacttcacac aaggacccct ccttgcaccc agtcctagag tcggttcacg actccttaac
181 ggactccctc caaacctacc cctggatggt cccacaagac ctccaaccct tccttctcaa
241 atcgggaatc ccgatcaact ccttcggaag ttccccccac ccccacccag cgcacaagac
301 gctggaaacc cacctactct tcacccactg gatgcatctt tgcacccagc cttcatctgt
361 cctcttcatg aagcctcaaa aattcatgaa gctccaaagg aagaacaagt tcttccaaca
421 tctccacaac taccgcctga ctcccaccga ttcagtgcgt tttccttcaa cctctcccca
481 cctcccaaac acccctttcg tgttcatgca cgatgctctg atgtactacc aacccgaaca
541 gatccttcat ctgtttcacc aagttccgca gttgaccaac ctcttctgct ctcttgtgac
601 cccaccagaa tcccacttca cccacctctc cctcatgccc gacctctaca ccttcaccct
661 gaaaggtcaa accctccatt acaccccaga gggacactcc gccggttcat acaaccagcc
721 cataacagcc ctctcctggc tgaaaatcaa ctccatcctc tccccaaatc tcaacctctc
781 catcacaatt ctggaatcct ggggacctct ccattccata ctgatacaaa gaggtctccc
841 cctcccagat ccgaagctgc tagttcgcag tcttcctcca ttctcccgct cccccgaccc
901 ggaaaccgac ctggtgtcct tccaggtccc aaagtccgtg gagctccctc aagcaacctt
961 cctctcccaa cccctcaggc accgcctcgt gccagagagc gtctacaacg ctctcttcac
1021 ctacacgcga gccgtcagaa cgctccgcgt ctccgacccc gcaggcttcg ttcggaccca
1081 atccaacaaa cccgaacaca agtgggtcac ccccagtgcg tgggacaacc tacaaacctt
1141 cgcgctgctc aactgccctc tccgaccaaa cgtggtgtac cacgttctcc tcaacccact
1201 ccagaaaatg aagctgtact tctcacagca ctggcgccgc ctcggcgtca tagccgctcc
1261 tggcctcttc tgcctttccc tccttcttcg ctcccagaag tggtctttgc ctcttccaaa
1321 ggcaaagtcc atctccgtct ttcgacgcaa cctccttctt ccccccaaac ctcatcgtcc
1381 ccccctcctc cctcacccag aacagatgct tcaggaattc aaactcccct ggcatcgccc
1441 ccctccaaaa ggaaagagaa atcccttcct cacccttctc atcaacctcc ttcacattcc
1501 aagagaaatc tgcgccggca ttcggcgcta cccctcttac taccaatcca tccaaccaaa
1561 accactcaac cccatccagc agttccgcaa ccaactgctg gcccaactcc acaccctccc
1621 cctaccaaaa aaattcctct ccatcctccc aagagccagg aaagacatcc ctctcctccc
1681 ccggatgtct ttcacgactg tcaaccttcc tctccaacct cccatgtggt tggctatcgg
1741 cgcctccttg gttccggaat tagccttcct tttaagctgg ctttctggag acgtcgatct
1801 ccaaacccag cacgacatct accaccacca cctccacccc gaaaacttca ctctgagctg
1861 gactcgaact ccttatctcg ctctagctcc ttctcccttt ctcccctatg ctcactcccc
1921 ccttccccct ctcccagtga acagctcccc actgtttccg ccccccccac cccttccccc
1981 atcccagcca cccctctccc agggtcccgc cacccaagcc ccatccgccc aaccaacccc
2041 cggcgaacca ctccttgctc ctccaaccac cgaactcaaa ccagagagtt ccaacccaaa
2101 caaccccaac ccaagctcct cggcaggttc aaacccccca ccgaagagtt cctccagcga
2161 caatcccccc gctcccaaca aacctacgcc tacctcctca agtactacac cccccagccc
2221 caacctccct ctccaattcg gatcgattca ctcacccttt ctgagcgatg ggcagctgaa
2281 ttattccgct ctccctcccc ctcaagatcc taccaacacc accctttctc ttctccctga
2341 accaaagccg ccaaccgaag ttcagtcccc cctaatggcg gatccgactt gcgtcggccc
2401 cgctgtttcc ttttccagcc tctacccaag agacttcttc cccaacaccg cctctttcct
2461 caccagactc agactttctc cacccactcc ccttccaatg cccaagaaca actgccttct
2521 caccgcagtc gccccttccc tccatataaa ccctcaccgt ctctggactt ccctccagga
2581 agtcctccca gattccctcc tctccaactc tgagatagac tcagtcggca tgtccaccga
2641 tcttctcaca gctctctccc acctcttcaa cttccaagcc gtcgtccaca gtgaacgtgg
2701 tgacatcctc tttggccttc agtccgccaa gactgtcatc cacatctacc acaccaacgg
2761 cccccccgct cattactccc ccccccccaa aatcatcggc tcgaactccc ctccttcaag
2821 ccaacaacat cccttggaac aagctgctct tcgcttcaag taccaaggct cccaccttcc
2881 tttctcttcc ttccactcct tcaccacctc ggttcaacac gccaagaacc tcatttctaa
2941 catgaaaaat ggttttgacg gcgtcatgtc aacaatcgaa ccgagcatca ggcatcaacc
3001 tggccactcc cccagagaaa aattcattgc acttgatgca atgatagatc tggccagacc
3061 caaaaccgtc tccatgttcc acttggccgg ctttgccggc tgtggaaaga ccaaaccact
3121 ccaatccctc ctctccactc gacctttcca ttcattccgc gtctctactc ccaccactga
3181 gctgcgaaac gaatggaaaa aagacatgaa cctccccgcc tcccaggcct tccgattctg
3241 cacctgggaa tcttctctcc tcaaacagac caagattctc gtcatagacg agatctataa
3301 gctcccccgt ggttacctcg acctctgcat tttggcagac ccctgtcttg aactggtcat
3361 cattctcggc gaccctctac aaggcgagta ccactccact tcccctcact cttctaacca
3421 tcagctgcag tccgagacca cccgacttct ccccttcatt gatcactact gttggtggac
3481 ttatcgtgtc ccctctcaca tagctgatct tttctccgtc ccaagcttca atcgaagcga
3541 gggacattac caaatggccg tccgcacagc agactcctac acccccggcc atttcaatct
3601 tgtcaacagc gttgccacag ccaacgccgt cattcaactt ggcttccctg caaccaccat
3661 cagcgccagt caaggagtca ctcaccacaa ccgagtgacc attttgctag acaagcactc
3721 tcgtcttctc tcccccagca acaccttggt tgccctcacc cgctccacag tcggagtcga
3781 gtttcttggt gacattggct ctttgtcagg caccaacaac tcatccgaca tgttctccag
3841 ggccatatac cgacagccca tcaacctctc ttcttctttc ccaagaattt tccaccttct
3901 ccctcttctg aacaaaccaa tttcccggag atccacccgc ctcatagggt ctcattcacc
3961 catcttccac aaccctaggc tcaccaacat ccatcttccc ccccacatcc ctacatccta
4021 ctctcaagac ttcgtcgtct ccaaccctat tttccagggc caggccgacc cccgtcttga
4081 cacccacttc ctccctccaa cccgtcttcc tcttcagtcc gagcttctcc cagctcaatt
4141 gagtcagact accaaaccca ctgactcttt caccaacaac acccctttca ccccggtcta
4201 ccctggcgaa aactttgaaa atctcgccgc cttcttcctc cccgctcacg accccgagtt
4261 aaaggaagtg accaggcgcg accaaacaag cgcccaattc ccttggttcg accgcccttt
4321 ctccctttcc tgtcagccct cctctctcat cgcagcaaaa cactcccctt cccaagaccc
4381 cactttgctg cctttctcaa ttccaaaaag actccgattc cggaagtctg acaaccccca
4441 cgtcctttcc gccatcgacg tcttgctagg caaccaactt ttcttcaatc tttgcaaggc
4501 ttaccgtcgt aaccccaccc acgtaggtcc ctttaacccg gctctgtttg ctgagtgcat
4561 cgccctcaac gattacgccc agctctcctc aaaaacccaa gccactctcg tggccaacca
4621 ctcccgttct gaccccgact ggcgccacac agcagtcaaa atttttgcga agtcccaaca
4681 taaagtcaac gacgcctcta tctttggcaa ctggaaagct tgtcaaactc tggctctcat
4741 gcacgacttc gtaattctca gcctaggccc agttaaaaaa tatcaacgca tctttgatgc
4801 tcttgaccgg cccccccacc tttacaccca ctgtggaaaa agcccagccg acctctccgc
4861 ttggtgccaa acccacctca caggtcaaat taagctaacc aacgactaca cagcttttga
4921 ccagtcccag catggagagt cagtaatctt agaagccctc aaaatgaaac gtctctccat
4981 tccttctcac ctcatccaac tgcacgttca cctcaaaacg aacgttgcaa cgcagttcgg
5041 ccctctgacc tgcatgcgcc tcactggcga acctggcacc tacgacgaca actcagacta
5101 caaccttgct gtcatccact ctcagtttga catgaaggac atacccgtca tggtgtctgg
5161 ggatgactct ctcatcgacc gtcaaccccc tttagctcag tcttgggaag caaccaaacg
5221 tcttctccat ctgcgattca agactgagaa gaccacccac cctctcttct gcgggtacta
5281 cactggctct gccggtgcca tccgtaatcc tctcgctctt ttttccaaac tcatgatcgc
5341 catcgacgat gaagcgatcc acgaccgccg cctaagttac cttacagaat tctccacagg
5401 ccatcaacta ggcgacgccc tctggactct tcttccagaa tccacccaaa tttaccagtc
5461 ggcatgtttt gactacttct gccgtcattc tccccctcat gaaaaggctc ttctatcatc
5521 ctttgaactg cctgactctg tcatctccaa aatctcttcc tccaccaagt ggctctcaaa
5581 gaacgctttc tatgctctgc cttcaaaaat acgcaaagcc gtgatcgcct cccgccactc
5641 ttcctccttc ccggaaaacc ctgacgtctc ccaactagag tttgaattgc ttcaatcctt
5701 tcaattctag atggccacca atcacgtcct cgcttcccaa ctcccagtga acaccaagtc
5761 ctctgaaatt cctcttcaga gtggcactcc accccccaca ataatctacc ctttccaaat
5821 cgagatggcc agccttggca cggccgatgc ttctgattcc atcagcatcg cctccaactc
5881 tctcctcgcc tccgtaacca ccttgtaccg gcatgccaaa ttgacctccc tcaaagctac
5941 catccaccca accggccaag ccccagcctt cccaaccacc gttgccctgg cctgggttcc
6001 ctacaactcc accgccacct ctgctcagat tctctccgtc tacggcggcc agatgttctg
6061 catcggcggc tccatcaact ctctctcccc aatcgacgtt ccctgtaacc tcaccaacgt
6121 caaccccatc atcaaagact cagtcactta ctctgacacc cccaagctcc tcctctattc
6181 catcgcccag gagacagctc ccaccctcgc tacctgttcc gtaaccatca ccggaaccct
6241 cactcttcat tctcctctcc ttcaggccac agcctgattc aggtcgccag tgcgacaccc
6301 gttcccacac aacgggcatt ggggtgcaac tcccccgtcc atcctggacg tcaccaggac
6361 ca
//