GenBank-Updates@genbank.bio.net (03/07/91)
LOCUS ILACPTK 5665 bp ds-DNA VRL 07-MAR-1991
DEFINITION Infectious laryngotracheitis virus (ILTV) gene for capsid p40 and
thymidine kinase (EC 2.7.1.21).
ACCESSION D00565
KEYWORDS capsid p40; thymidine kinase.
SOURCE Infectious laryngotracheitis virus (strain Thorne), genomic DNA,
isolate V882, propagated in chicken kidney cells.
ORGANISM Infectious laryngotracheitis virus
Viridae; ds-DNA enveloped viruses; Herpesviridae;
Alphaherpesvirinae.
REFERENCE 1 (bases 265 to 5665)
AUTHORS Griffin,A.M. and Boursnell,M.E.
TITLE Analysis of the nucleotide sequence of DNA from the region of the
thymidine kinase gene of infectious laryngotracheitis virus;
potential evolutionary relationships between the herpesvirus
subfamilies
JOURNAL J. Gen. Virol. 71, 841-850 (1990)
STANDARD full staff_entry
REFERENCE 2 (bases 1 to 1980)
AUTHORS Griffin,A.M.
TITLE The complete sequence of the capsid p40 gene from infectious
laryngotracheitis virus
JOURNAL Nucleic Acids Res. 18, 3664-3664 (1990)
STANDARD full staff_entry
COMMENT These data kindly submitted in computer readable form by:
Annette M. Griffin
Houghton Laboratory
Institute for Animal Health
Houghton
Huntingdon
Cambridgeshire
PE17 2DA
U.K.
Phone: 0480 64101
Email: GRIFFINA@UK.AC.AFRC.IRAD
Fax: 0480 67870
Telex: 329154 HPRS
Comparisons of the amino acid sequences for thymidine kinase among
11 different herpesviruses are shown in [J. Gen. Virol. 71, 841-850
(1990)].
FEATURES Location/Qualifiers
CDS complement(59..1819)
/note="ORF1 for capsid p40"
variation 270..271
/note="c in [J. Gen. Virol. 71, 841-850 (1990)]; cc in
[Nucleic Acids Res. 18, 3664-3664 (1990)]"
misc_signal complement(1885..1888)
/note="put. TATA box for capsid p40"
CDS complement(1997..3715)
/note="ORF2"
CDS complement(3688..4551)
/note="ORF3"
misc_signal 4326..4329
/note="put. TATA box for thymidine kinase"
CDS 4440..5534
/note="ORF4 for thymidine kinase"
CDS 5568..>5665
/note="ORF"
BASE COUNT 1534 a 1342 c 1244 g 1545 t
ORIGIN Approx. 3 genome % units.
1 aagacgaata agtttaaatg cagtttattt aataaaatga cattactatt cacatgactc
61 agtctgccat catttgcgca aatgcggctg cttctttctt tcttttcaat tttgtctgag
121 catctttcag tcgttttggc atagaagcat cgactgtctc ccgagcagac tcttgattac
181 tattttctag ttcctctttt ctctctgaag acgaatcggc attggaagct gatttaagac
241 cggcaacctc tttttgaagg gtcagaattc cttgtaaaat atcattaatt ccgctaccaa
301 cgggttcctt tttttcacat agctgctgct ccgtagttat cttttttgct ggaaccattt
361 ccccagggaa gtacgggtca ttctcagaaa tggtcctagc ggatctcttc cgagggttat
421 tctccgagta ttcgctatcc cgtttattat ttttctcaag agccgaaatc aaggcatcta
481 agcgtgaaac aacagtctgc tcatgtaatg atggatactg tataggatac gttccagccc
541 caggaaactg gccgaagttc gaactataat aatttggatg cacggggtaa gtagatgcgg
601 ggctttgata aggaatatat gggaaacgcc cgcagaaatt tgggtcttcg taaagagccg
661 gtctgtaagt gtggttcatc cccggaccca taaaagattc taggcgaggg tgtcgttcga
721 atccacgcgg ccaaatatca cgtcctggtg aacattcgtg agtagagtcc cgcgacctac
781 gggaaaactc tcgtgatggc gacacgggtc tccggtcgtt atctctgcgg gctgatgccg
841 caagaagact cgcatacttc tcgaatggga catagaccat atcttcacga gatgcggacg
901 gtgaagctcc gttttttgtt tgcaagaact ggccggagca tgtcgccgac tccatggctg
961 gaacgtgtgt ttgcccggac ggttgctgac tctcgcttat atcgaagctt ggggccgttt
1021 gcgtagaaac tgaacggtct ttaatagcat tctcaggagt ctcttcggag tgttccttaa
1081 tccctatggt tattacctca ttcgcttgta aatatttcgg gttgtaaaca gctgccatct
1141 cgcgtcgcgt tttcaaacag gtacccctat ccatcaaaaa cgccccgtga ataaatttct
1201 tcatcaggac tcgcgtaatt tctggtcgcg acaactctct agggacttct gcacatttct
1261 cacgtgtagc tatttcatac agctgttctt taattggtgc gctcaaatca tcaaatgctc
1321 caatagcttc cgaagcggtg gccccgtaaa ttgctaccgt gccttcacgt ctacccaact
1381 cacagagcgc cacgtgtgca aaaaaatctt ttccgggcac ttcgttcttt tcaagccgcc
1441 ttgaagagag cgatagagaa ggtagaatgt tgctgagaag atagagaaat ttctctgtct
1501 ccgtcaaaac catcccctct tcggcattcg caaaaagagc atcatcttgc acgtagctta
1561 aaaaaatagg tgcaagagca gttgacacga cacccaaaca aaacagtcct ctcggcaggt
1621 ctaagatcgt cagcactgta cctaccacgc aggatgactc gtggtcaatg tttatcggaa
1681 ttgttccagg caaaactggt aaagccgatt tgctttgctc gcgagtaagc tcatattctc
1741 gcccggcact ttcttggtgg tcatatacta ccaaatagcc ggcaacgaag atatatttga
1801 tgtcgacgtt ctccgacata gcgagaccga ctcgacccgc aaagtatcaa cacactgaca
1861 aaacagacgg actgatcaga aagatataac ccttttattg tctaaacaga gacgcgatcg
1921 cgaaaatact aagcattatc catatgtcac gtgatgtggc aagcatccaa gacacataaa
1981 atagatcagg tcagaatcag actccacgtt gaatgtcctc aatattcctt tcaaatgctt
2041 tttttgcatc aaatacctca agtaacctgg acactccctc ttcaacgtca cctgtcaatg
2101 aatcgtgtac cgccaaaaca gcagctgccc cgctacccac atgtgacgtt tttctgagat
2161 caagctcaat tagattacag agggaggaat agtactcccc caaccgtacc gctgtcggta
2221 ttcctttaac gcgccccgtt atgcagagtg cagctaaacc aggaaagaaa ccagtaactt
2281 cacatctgtt gtcatatcta tacataggta caacatattt ctcgaataaa aagaacaagt
2341 tgttgtcgcg actggccata tcttgtccat tgtcatcaaa tgtgcttgcg gtggcttgag
2401 gtcttgaccc aggggcgacg ggccatttag ctgcctcctg ttccgattgg gttccaagtg
2461 gcaattcaaa gaacgcagat ggctgaaatc gattgagatg tgtgctcgta tagacattac
2521 tattaaacat tagcttttgc aagactagga gcagagatat cgagtctata accgttcgca
2581 caagcggatc atcttcatga agaattaacg gcgttcgtct cgaagggaaa aatgaaatgg
2641 agagagcagc aatggggtca tcaaaacgaa caaaatctgg atctattgga agcagagttt
2701 ctttcgttat atctcgtact gtggtggaaa gggtcccagt acgctttagc aattgataca
2761 ctatgtgagg atcgaacact ccattcgaat attttctgcc gtcaattggg gaaaaaaagt
2821 ttacggggag ttttgaccgg tcaaatgaaa atgtaactga gccccactcg gcccgaatat
2881 cttccagcat ataatttaaa tacgttggaa catgtcttaa tgcatcttca aatatagaaa
2941 catcaagacc atgtctaatg tttgaagcag attgtctaga ccgcgagtag tgcagtaagc
3001 ataaaacagt agcctcgaat ccgctatatt gtcgagtccc agcataaatt tccatcgccg
3061 atcgcagcgc tcgaatagcc gttttcataa accgccccga gatgcgcgtg tctcccatta
3121 cattcaaaac cctagcgata gctttattgt tatctaggag ctgagtctgt agcgcgcgaa
3181 accaagaccc gaatcccagc cggccattgc cagcaatagc aaacgaagtt gtcagaaaat
3241 ctacttgaaa atctgtatta aaagttaatg gttctccatt cttaactatc caaattacgt
3301 tcgcagggac atcctcgcca ggcgcacgga tgtctagtgt tttataagac ccaacaatgt
3361 ccttctcctg cacggcccgc tgggctaaat catccaagac atcaattaca gtctctaggg
3421 gatattcaat agtttgcaat gccgatgaga catgtacggg aacagtagcg ctcatatttt
3481 ccagttgctc taaagctgcc ttggcagccc tgttccgcct ttccagatct tcaatccttg
3541 cacgattggt catgatttct gcgtctatta gagttccttc gaaaagctta gatgcatatt
3601 tactcgagcc ttccgcgcag gagataaagt ttaaacgatc ggctaaaacc atcaaggtag
3661 acggcttgtt gctgtccttt ggtaaattca taggttcgaa tctgggtcga aacatggttc
3721 ggacaagttt ttggactcct ccgtagaagt ggaatagctc gcgggtttgg ttgcggactc
3781 ttttcccacg cgcgacgaaa acaatgcagc tacggtttgt aaggctgaag gggcgggaga
3841 cgctagatcc gcattctttg cactttcttg ttgatactta ctgcgcgcat gcgacacgcg
3901 tggctctaat ttcgcgcaga aagtctttaa atactggctt ctggtagcta gagtgacaaa
3961 gaaaagctca gacgatacat ttataaccgt ttccccaacc gtttttaccg ccaagatgtt
4021 catcccccgt tgagcaacaa ataccagtag agaaagaatc tttactttct cagtgccagg
4081 aacagccaga ttctccaaca atcgtgcaga atcgcgaagt tggagagtgc cagtatatcc
4141 ttgtcttaat ttactttcag tcatcaaaga tttggaaaaa cgacatgttt tcagttcaat
4201 cacaatacat ttcatttcat gttgtgtctc cagcaaacaa atgcaatcag gtttccgcaa
4261 ccctaggttc acttcaaaca tgactacaat tttgcccccg gcaggtttgc attggggaat
4321 tatcgtatag gccagccttc cgtctccacc cccttcaaag acttcctcca gtgatctgac
4381 gagagctcgg taaaagcgat tatggcaacg gattccggca tttagtctag cccgcagaga
4441 tggccgtagc tggcgccgtg aaaacttccg gtggtgtgca gttttgctcc gagttcgaga
4501 acgatgactc cgactttcgc cgcgttgtac ttctttacgt cgacgggcca ttcggagtcg
4561 gtaaaacagt cactgcaaag acgttgatgc aaatgccaaa ttggagaggt tgccgtctat
4621 acttagcgga acctatgcaa gcatggcgcc aatggtttgg cggagcggat atgatcaaag
4681 aaattaatga aatacaaacc ctaaaggctt ccggaaaact tgaatgtcgg gaggcgtctc
4741 cggttgccgt agcggaagtt cagatgacta ttgctgcccc actaagaata atgaaccacg
4801 tcatttataa ttatttggga tctgaacgct gctacagcgc agctgcatcc ggaccagatg
4861 atgtcttatt cctcgtagat aggcacccac tcgcggcatg tttgtgtttc cctgttgcac
4921 aatatctaag cggagcgctc gaatttggag atttaataac tttattgtca ggaattcctg
4981 acattccaac acactccaac attgttttaa tggatttgga tatttgcgaa caggcacggc
5041 gtataataca aagggggcgc ccaggggaaa cggtcgactg gacgtatttg tgtgcattac
5101 gtaactcgta catctgcctc atgaatacta ccacctacct ccaacgtaca tcttatccag
5161 cattgttgaa ggagcaagaa gccttaacaa gtgccacgct cttaaaattc aagagagagt
5221 gcttagaaac tgctactgtt ccagaaatca atccttcaat cgaccagacg ctatttgcaa
5281 tattagcttt tgatcagcaa aatgttcacg gggaaagatt aaaaactgta ctttcatttg
5341 tggttcaaaa actcgcgacg gtattgaaaa acttgtgcat tttttactta ccagcacatg
5401 gcctcacccc ggaggcatgt gcactgaaat gtttagagtt tgccgagacg gcaagttctc
5461 ttacaaccaa acgagcggcg atcgcgagct taattgacgc agtagagcgc tacaatgctg
5521 atatgggttc gtaatgttcc gcttccataa tccttcacaa taagagtatg tcctttactc
5581 atttccttgc tttgtactca ttcttactcg agagagcgtg gcttcaccag caacccgcgc
5641 cgatgggaca cgcgagagaa atatt
//