GenBank-Updates@genbank.bio.net (03/13/91)
LOCUS POIRNA3 1367 bp ss-mRNA VRL 13-MAR-1991 DEFINITION Porcine respiratory coronavirus mRNA 3, 5' end. ACCESSION D00658 KEYWORDS peplomer gene; subgenomic mRNA. SOURCE Porcine respiratory coronavirus (strain 86/137004, 86/135308), British Isolates, cDNA to mRNA, from viral infected LLC-PK1 cell lines. ORGANISM Porcine respiratory coronavirus Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Coronaviridae. REFERENCE 1 (bases 1 to 1367) AUTHORS Page,K.W., Mawditt,K.L. and Britton,P. TITLE Sequence comparison of the 5'-end of mRNA 3 from transmissible gastroenteritis virus and porcine respiratory coronavirus JOURNAL Unpublished (1990) STANDARD full staff_entry COMMENT These data kindly submitted in computer readable form by: Paul Britton Division of Molecular Biology Agricultural and Food Research Council Institute for Animal Health Compton Laboratory Compton, Newbury Berkshire, RG16 ONN U.K. Phone: +44-635-578411 x211 Email: britton@irad.afrc.ac.uk Fax: +44-635-578844 It is reported that the nucleotide sequences (474-480 and 1168- 1173) potentially involve in the subgenomic mRNA synthesis in [J. Gen. Virol. (1990) In press]. FEATURES Location/Qualifiers CDS <1..185 /note="peplomer gene (AA at 3)" /codon_start=3 variation 282..282 /note="g in strain 86/137004; t in strain 86/135308" CDS 490..1224 /note="ORF-3" /codon_start=490 misc_feature 553..555 /note="pot. N-glycosylation site" misc_feature 883..885 /note="pot. N-glycosylation site" CDS 1211..>1367 /note="ORF-4" /codon_start=1211 BASE COUNT 413 a 215 c 261 g 478 t ORIGIN 1 ggccttggta tgtgtggcta ctaataggct tagtagtaat attttgcata ccattactgc 61 tattttgctg ttgtagtaca ggttgctgtg gatgcatagg ttgtttagga agttgttgtc 121 actctatatt cagtagaaga caatttgaaa attatgaacc tattgaaaaa gtgcacgtcc 181 attaaattta aaatgttaat tttatctgct ataatatcat ttgttgttaa ggatgatgaa 241 taaagaactt tcaagtcagt caaatttact aatacatccg tggacgttgt acttgacgaa 301 cttgattgtg tatactttgc tgtaaccctt aaagtagaat ttaagacttg taaattactt 361 gtgtgcatag gttttggtga catacttctt gcggctattg aagaagtaaa cacacaaaat 421 ccaaagcatt aagtgttaca aaacaattaa agagagacta tagaaaaact cgaactaaac 481 tttgtgaaaa tgattggtgg actttttctt aatactctga gttttgtaat tgttagtaac 541 catcctatcg ttaataacac agcaaatgtg catcatatac aacaagaacg tgttatagta 601 caacagcacc atgttgttag tgctagaaca caaaactatt acccagagtt cagcatcgct 661 gtactttttg tatcttttct agctttgtac cgtagtacaa actttaagac gtgtgtcggc 721 atcttaatgt ttaagatttt atcaatgaca cttttaggac ctatgcttat agcatacggt 781 tactacattg atggcattgt tacaacaact gtcttatctt taagattcgc ctacttagca 841 tacttttggt atgttaatag taggtttgaa tttattttat acaatacaac gacactcatg 901 tttgtacatg gcagagctgc accgtttaag agaagttctc acagctctat ttatgtcaca 961 ttgtatggtg gcataaatta tatgtttgtg aatgacctca cgttgcattt tgtagaccct 1021 atgcttgtaa gcatagcaat acgtggctta gctcatgctg atctaactgt agttagagca 1081 gttgaacttc tcaatggtga ttttatttat gtattttcac aggagcccgt agtcggtgtt 1141 tacaatgcag ccttttctca ggcggttcta aacgaaattg acttaaaaga agaagaggga 1201 gaccgtacct atgacgtttc ctagggcatt gactgtcata gatgacaacg gaatggtcat 1261 tagcatcatt ttttggttcc tgttgataat tatattgata ttattttcaa tagcattgct 1321 aaatataatt aagctatgca tggtgtgttg caatttagga aggacag //