GenBank-Updates@genbank.bio.net (03/13/91)
LOCUS TSWSRS 2916 bp ss-RNA VRL 13-MAR-1991 DEFINITION Tomato spotted wilt virus S RNA segment, complete sequence. ACCESSION D00645 KEYWORDS non-structural protein; nucleocapsid protein. SOURCE Tomato spotted wilt virus (isolate CPNH9), cDNA to viral RNA. ORGANISM Tomato spotted wilt virus Viridae; ss-RNA enveloped viruses; Negative strand RNA viruses; Bunyaviridae. REFERENCE 1 (bases 2 to 72; 2848 to 2915) AUTHORS De Haan,P., Wagemakers,L., Peters,D. and Goldbach,R. TITLE Molecular cloning and terminal sequence determination of the S and M RNAs of tomato spotted wilt virus JOURNAL J. Gen. Virol. 70, 3469-3473 (1989) STANDARD full staff_entry REFERENCE 2 (bases 1 to 2916) AUTHORS De Haan,P., Wagemakers,L., Peters,D. and Goldbach,R. TITLE The S RNA segment of tomato spotted wilt virus has an ambisense character JOURNAL J. Gen. Virol. 71, 1001-1007 (1990) STANDARD full staff_entry COMMENT These data kindly submitted in computer readable form by: Peter De Haan Department of Virology Agricultural University Wageningen Binnenhaven 11 6709 PD Wageningen The Netherlands Phone: 08370-83094 Email: molvir@rcl.wan.nl Fax: 08370-84820 FEATURES Location/Qualifiers repeat_region 1..70 /note="inverted complementary sequence" variation 16..16 /note="g in [J. Gen. Virol. 71, 1001-1007 (1990)]; c in [J. Gen. Virol. 70, 3469-3473 (1989)]" CDS 89..1483 /note="non-structural protein" misc_feature 483..491 /note="pot. N-glycosylation site" misc_feature 716..724 /note="pot. N-glycosylation site" misc_feature 896..904 /note="pot. N-glycosylation site" misc_feature 959..967 /note="pot. N-glycosylation site" misc_feature 1229..1237 /note="pot. N-glycosylation site" repeat_region 1583..1835 /note="hairpin structure" CDS complement(1987..2763) /note="nucleocapsid protein" repeat_region 2850..2916 /note="inverted complementary sequence" BASE COUNT 922 a 563 c 468 g 963 t ORIGIN 5' end of S RNA segment. 1 agagcaattg tgtcagaatt ttgttcataa tcaaacctca cttagaaaat cacaatactg 61 taataagaac acagtaccaa taaccataat gtcttcaagt gtttatgagt cgatcattca 121 gacaagagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 181 gattcatgaa cttggtactg gttctcaact agttcagacc cagctgtatt ctgattcaag 241 aagcaaagta gtcctttggc tatactgcaa agtagggatc ttccctgtga agaagaagag 301 atttctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcatcaatat 361 tgataactct gttctggcac tatctgtttg ctcaaataca gtcaatgcta acggagtgaa 421 acatcaaggt catttgaagg ttttgtctcc tgcccagctc cactctattg aatctatcat 481 gaacagatct gatattacag accgattcca gctccaagaa aaagacataa ttcccaatga 541 caaatacatt gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa 601 gatcgagatg tgctataatc aggctttagg caaagtgaat gttctatctc ctaacagaaa 661 tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 721 aactgtaaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 781 taactctcaa gcttccactg attctcattt caagctgagc ctctggctaa gggttccaaa 841 ggttttgaag caggtttcca ttcagaaatt gttcaaggtt gcaggagatg aaacaaacaa 901 aacattttat ttatctattg cctgcattcc aaaccataac agtgttgaga cagctttaaa 961 cattactgtt atttgcaagc atcagctccc aattcgcaaa tgcaaagctc cttttgaatt 1021 atcaatgatg ttttctgatt taaaggagcc ttacaacatt gttcatgacc cttcataccc 1081 caaaggatcg gttccaatgc tctggctcga aactcacaca tctttgcaca agttctttgc 1141 aactaacttg caagaagatg taatcatcta cactttgaac aaccttgagc taactcctgg 1201 aaagttagat ttaggtgaaa gaaccttgaa ttacagtgaa gatgcctaca aaaggaaata 1261 tttcctttca aaaacacttg aatgtcttcc atctaacaca caaactatgt cttacttaga 1321 cagcatccaa atcccttcat ggaagataga ctttgccaga ggagaaatta aaatttctcc 1381 acaatctatt tcagttgcaa aatctttgtt aaagcttgat ttaagcggga tcaaaaagaa 1441 agaatctaag gttaaggaag cgtatgcttc aggatcaaaa taatcttgct ttgtccagct 1501 ttttctaatt atgttatgtt tattttcttt ctttacttat aattatttct ctgtttgtca 1561 tctctttcaa attcctcctg tctagtagaa accataaaaa caaaaaataa aaatgaaaat 1621 aaaattaaaa taaaataaaa tcaaaaaatg aaataaaaac aacaaaaaat taaaaaacga 1681 aaaaccaaaa agacccgaaa gggaccaatt tggccaaatt tgggttttgt ttttgttttt 1741 tgttttttgt tttttatttt ttattttatt tttattttat tttattttta ttttattttt 1801 attttattta ttttttgttt tcgttgtttt tgttatttta ttatttatta agcacaacac 1861 acagaaagca aactttaatt aaacacactt atttaaaatt taacacacta agcaagcaca 1921 agcaataaag ataaagaaag ctttatatat ttataggctt ttttataatt taacttacag 1981 ctgctttcaa gcaagttctg cgagttttgc ctgcttttta accccgaaca tttcatagaa 2041 cttgttaaga gtttcactgt aatgttccat agcaacactc cctttagcat taggattgct 2101 ggagctaagt atagcagcat actctttccc cttcttcacc tgatcttcat tcatttcaaa 2161 tgctttgctt ttcagcacag tgcaaacttt tcctaaggct tccttggtgt catacttctt 2221 tgggtcgatc ccgaggtcct tgtattttgc atcctgatat atagccaaga caacactgat 2281 catctcaaag ctatcaactg aagcaataag aggtaagcta cctcccagca ttatggcaag 2341 tctcacagac tttgcatcat cgagaggtaa tccataggct tgaatcaaag gatgggaagc 2401 aatcttagat ttgatagtat tgagattctc agaattccca gtttcttcaa caagcctgac 2461 cctgatcaag ctatcaagcc ttctgaaggt catgtcagtg cctccaatcc tgtctgaagt 2521 tttctttatg gtaattttac caaaagtaaa atcgctttgc ttaataacct tcattatgct 2581 ctgacgattc tttaggaatg tcagacatga aataacgctc atcttcttga tctggtcgat 2641 gttttccaga caaaaagtct tgaagttgaa tgctaccaga ttctgatctt cctcaaactc 2701 aaggtctttg ccttgtgtca acaaagcaac aatgctttcc ttagtgagct taaccttaga 2761 catgatgatc gtaaaagttg ttatatgctt tgaccgtatg taactcaagg tgcgaaagtg 2821 caactctgta tcccgcagtc gtttcttagg ttcttaatgt gatgatttgt aagactgagt 2881 gttaaggtat gaacacaaaa ttgacacgat tgctct //