GenBank-Updates@genbank.bio.net (03/15/91)
LOCUS HUMCOLII 6723 bp ds-DNA PRI 15-MAR-1991
DEFINITION Human alpha-1 collagen type II gene, exons 1, 2 and 3.
ACCESSION M60299
KEYWORDS collagen type II alpha-1.
SOURCE Human DNA.
ORGANISM Homo sapiens
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae.
REFERENCE 1 (bases 1 to 6723)
AUTHORS Ryan,M.C., Sieraski,M. and Sandell,L.J.
TITLE The human type II procollagen gene: Identification of an additional
protein-coding domain and location of potential regulatory
sequences in the promoter and first intron
JOURNAL Genomics 8, 41-48 (1990)
STANDARD full staff_entry
FEATURES Location/Qualifiers
CDS join(852..936,5010..5216,6707..6723)
/product="alpha-1 collagen type II"
/gene="COL2A1"
/codon_start=852
/partial
TATA_signal 667..672
/gene="COL2A1"
intron 937..5009
/number=1
/gene="COL2A1"
exon 5010..5216
/number=2
/gene="COL2A1"
intron 5217..6706
/number=2
/gene="COL2A1"
BASE COUNT 1357 a 1865 c 1820 g 1681 t
ORIGIN
1 cattcccaac ttcggcctgt gctccagagg aagccttcaa cgcagagctg gatgggggag
61 gggtggaggg cagtcgctgt gaacgtccag gtgggagtct ggggaccagg tactgcaggg
121 aagggctaaa agataggtcg gggtaaccct tcagatctgg ctcagctagc ctgtctccaa
181 gatttaggac tctgaatctc tgtgggctcc tccctgtccc cactcccaaa cgcctgacgc
241 ggtgccccct cgccctccgc tgctccttct accgctttcc ctcctccctc ccatgtcttt
301 tccgtccttg gtctagggct ctcggcctgc gcctctgcaa acaccccctc ccctccaact
361 ccggcagaac tccgagggga ggggccggca cgcccttccc gcctgtggtc agagggggca
421 gccgcagccc cgggtttggg gggcaggggc catctctgcg ccccgcccga tcaggccact
481 cggcgcacta ggggtggagg gcgggaagcg tgactcccag agaggggggt ccggcttggg
541 caggtgcggg cactggcagg gcccaggcgg gctccggggg cgggcggttc aggttacagc
601 ccagctgggg gcagggggcg gcccgcggtt tgggcgagtt cgccagcctc gaaaggggcc
661 gggcgcatat aacgggcgcc gcggcgggga gaagacgcag agcgctgctg ggctgccggg
721 tctcccgctt cctcctcctg ctccaagggc ctcctgcatg agggcgcggt agagacccgg
781 acccgcgccg tgctcctgcc gtttcgctgc gctccgcccg ggcccggctc agccaggccc
841 cgcggtgagc catgattcgc ctcggggctc cccagtcgct ggtgctgctg acgctgctcg
901 tcgccgctgt ccttcggtgt cagggccagg atgtccgtaa gtcttccccc gccgctgcct
961 gcctgcctgc tttccatgcg tccctcagca tccttctccc cggcccgctc cagctctgga
1021 gcccgcggct ccgggctaaa acggctcccg gggtcgtagc gcgccgactt aggcacagga
1081 cacgcagaag ttcaccaaga agagttctgc caatcaagac tctgtcccag ggtcctcggt
1141 gccctacgca gttgcaagta tttgcaggtc cctacgttgc gctagaatac tgaacttgca
1201 aagtgttggc tcggagaagt ttgcgcacag atataaatgg gctcttttcc accagctttg
1261 ataattaggc gcacatgcac acagctcgcc tcttcgaagc acttcgagtt cagcaaaaac
1321 agatctcaac tcatcgaact taggtgaagt aggaaagaga gagcgcgagc gagggagcaa
1381 gcaaacgcca aagggttgac ttcacagcct gtccaaggct tggtggctgg tgggctcaaa
1441 gcagagttag acaaagggga ctaacactct gacactggtg ggctgaaatc ccaggccaca
1501 aagaacggct tccgataggc cctctgagac ctcagcgcct ctttaggtac cctccccctc
1561 ccagctggcc ctggagcaag gtgcagccct agcgctcatc tcgacttccc tccgtccgcc
1621 tgcgcctctc ttctgataaa gggtacagaa acttccagta ggagaggcca tctgaaagac
1681 gataacattc caaccagacc gtgcttttca aatgcccccg aaaatagcgc ccccttcccc
1741 gcggtcttac cccattcccc gccgccccga ggtactacaa tgagttactt ttctaaattc
1801 tggaactcac cgagccaggc tgcgtggtgt gtgtgtgtgt gcgtgtgtgt gtgtgtatgt
1861 gtgtgtaggg aaggggagca ggctggtcga ttggctacgg ttgctacaac tatttcaacc
1921 ggtatagtta gagatggctc ttgtagtcgg tcaatgctgt tcggactgca cctttctacc
1981 ctcttgaagg tcactgtctg ggattatatt caggacaaac gaagcctgga aagtgtatta
2041 ggtagagagg attttttttc cacgtgtttg ggcacgtttc cgacggctgg gattccagcc
2101 tgtctttgta tgttacagat tgtaaatcaa tcgcagaggg aaactcttcg gcgggggaaa
2161 taaaagttct ctgccttcga ggctctgtgg gccctctcct gccaccaggc tgtttccagg
2221 gatagcgtgg aaggcggcgg gctcaggcgg gctttccggt cattagcgcg acggggcagg
2281 gctggagctg cgcgcagctg cgaggagccg ggagcaggag actctggccg gtcacccggt
2341 agtgcgctaa gctggaggcc gctcctgggc atttgaggaa tacagcgtga ctatacgtgg
2401 cctggactca gactgactat atttttgtac taaatttaca agcacacgcc cacaaagctg
2461 tcttcttgac tgacccctgc cttagtgagc aatggaatta gctgggtggc tttaaaataa
2521 ttctcaaatt ctccatccgg tattagggtc gcttgcttaa ttaggcggta gaggtctctc
2581 atcgccgcat ctttcctggg agggagtgat tccacagctt ctccggccca aaccttccag
2641 tcgctcctcc tcccaagagg gagtgtgatt ctgcatccga gaggctgatt ttgcgccctg
2701 gagcatccca ccttttataa cttcccccgc ctgggtcagc ggacccaaag gtgtgacgtg
2761 gggaaatgcg cagtctgcgt ggacgtcagg aatgtcagac acctagagct cggccacacc
2821 cctcctctcc atctttccac gagtttgaga aacttactgg cggcggggtc tttgaccctc
2881 atctgcattc agagccctcg cctccgaaag tgccctggct cagggagaga tctcaatcct
2941 cctttgtgag gcttgtttgc attgggagat tggcagcgat ggcttccaga tggggctgaa
3001 acgctgcccg tatttattta aactggttcc tcgcagagac ctgtgaatcg ggctctgtgt
3061 gcgctcgaga aaagccccat tcatgagaga cgaggtccag tgggttctct cgtactccca
3121 gaccccctct cccacaatgc ccccctgtgc ccagcgccgc cgcctctctc gctccagccc
3181 tggccagagc ggcggtgaag caaaacagtt ccccgaaaga ggtagctttt taattggctt
3241 gccacaaaga atcacttata cggcctgcgg taatgagggg aaccggatca ggcgggccgg
3301 gatgctatcg gcagccgttt tggagcagca attatggtgg tgctgggctc ctccgtccac
3361 acctagggga tcctaggccg gttacgccct ggctcctttc tggggcagtc atttaatccc
3421 acttttcact ctcccggtgt ctgtgagcga gccgtgtcca gagccgcagc caacagagtc
3481 actcagcggc tcttacaccc agcgcccagt ggccccgccc tgcgccggcc gttcccgggc
3541 cgcccttccc cgggaaatct gatccgcacg gggagtggcc cctctcctag catttccccc
3601 tctcctccct gggtcctcat gggcgagggt gggctctcct gtagtctggg ctggagcgca
3661 ttaaccgatg ccccctctcc cacaccttcc tcaccgcctg cattccactg ctccagctat
3721 tttaacaggc gggtgtgtcc ccgcaacttc tgtattttcc ctggaatccc tcaccctcct
3781 gtgattatct tgcccaaagg ctaggcggat ttcttctagt gggaaagtaa aaaggaacgt
3841 ttatcttttg gattttcact ctctttaaag agcagtgggc aggctcgttt ctttctccgc
3901 ctctgggttt gtggctcttt cctattattc atcccctgct gctgctattg ccttggggat
3961 tttgatgaga aaaaccaggc tgggcgctcc ctacgacgtg gtggcctcta acgccttggc
4021 tgctaaggag cgctcttgtc agcacaggtt tcatttgcag catgaattcc agacggcagg
4081 gcgctggtgg aggagactag tccctgctat tcttcctctg cagtcttgga ggaggccagg
4141 cctggactgg caatcttagc cctagccagg tattcaacga cccctgctcc ccaaactggg
4201 gtggcctgtt ttcagatgga ggcagggcct ctccaggcag ggctacaggt ggaggtgagc
4261 actgggggga ctttggctcc actggcctcc taagcagttt attagcctgc ccaagcccaa
4321 gtgtattgtt tgaatgggtc tatcccctcc caattggtcc taatctaata tggtcaaaga
4381 atgagacaag atcctaattc ttataggctc cgtcttttca ccccctttca tttatatacc
4441 tattttggga ggcctcagcg tgcttcatag gattcccaat tttgtaggta gaattttcta
4501 cattccctct tgaatgttag ttgtcaggtg tagtttggct aatccccata attccccaga
4561 ggaaagggca gaagaaggaa gacttctctg ctcctgggcg gtggaggagg tctcgcctct
4621 ccgaattcaa atgctgaaca atgtaggctg gggccacctg gacatataga acttaaaaat
4681 tattttccta aaacatcatt gatttttcca tgtattcaac aaatatttat tatgcacctt
4741 gcaccatgtt gtctattcac cagtgaaaat cttgacccag caatgaaggt ggggggttac
4801 tatactatat tctctttacc cacctaatac gggggagacc aggtgatgga gtgggtggag
4861 ggagttggag ggtgagccgg aagggaggag accaggatat ctgaatagga attctgtcaa
4921 gttgactgca acctctctct ttttctctct ggctccccac cccctccttc ccttggctct
4981 ctgcttctcc ctccccaccc ttggtgcaga ggaggctggc agctgtgtgc aggatgggca
5041 gaggtataat gataaggatg tgtggaagcc ggagccctgc cggatctgtg tctgtgacac
5101 tgggactgtc ctctgcgacg acataatctg tgaagacgtg aaagactgcc tcagccctga
5161 gatccccttc ggagagtgct gccccatctg cccaactgac ctcgccactg ccagtggttg
5221 taatttattt atttcctgtt caacataaat aaattacttg caagcactgc aaacacgctc
5281 ccatagatgc tggtcgtctc tgcaaagcag aggggctagt tatccatggg acctggtagc
5341 tggggtagaa aaggaaaagg ccacttctca cttgcaggtt gaaactgagt gaatgagcct
5401 gagacactag aggggtcctt ctttgcccaa catctccaaa aacatttgct tccaagacac
5461 atgaaggaca gatgtaattc tacaaaaaaa aaaaaaaaaa atcctctctg aaatcatctc
5521 tgcaaattac tagagccact atggagatca aatgctctgt cttggccaat ccacgaatta
5581 attcctcctc tgccaccgat accttgtctt ctccttagaa gacttctatg tatgtggtct
5641 tcagtgtgga gaaagctctg ccagctagtg gggagactgc aggggcagag gctccctctt
5701 tgagttatgg aacattggtg gtagtttcct ctctgctatt acctctcttg gagttgacca
5761 ttaattcaga agcaaaataa taagagaggg aagggctagg ctttgggagt tctagtgggg
5821 acgggtggag acagagcccc atgtatctgc actgtagtgg gtggttataa actcccagtt
5881 agatccagtg ctggtggatg atatatgtgc aggtgacccc ttccccagca ttcaatacaa
5941 gatgtcctat ctcccctgca gagtgagtgg ggacgcttgt gtaggttttt tgggtagctc
6001 ttgctgtccc cttcctgctg aagtagagaa ggccgtggca agggaagtga gaagctgcct
6061 ttccttaaca cttcaccaac actggctccc taatgtgcac attcccagat cctttctgag
6121 gggcccgtgt gagtgaagtg ttgattgcct ttactatttt gctgctactg tgaaggagag
6181 gttattgact ggggtggcac aggctatgat gctccgatgc tcttcataac tcatatgcct
6241 tgctgttttt gtgtttttat ttgtgcttgc ttcaaggaga cccagctcta atgtaagacc
6301 tttctaagta cctaactctt cctctgggag ggcttggggt tcgggaacgg ctccctacct
6361 gtggggggaa gagagactga atctgtgctt tccttcttgt ggctgattag atcttgagct
6421 cttcattgcc tttttgtgct gcccttgctc ctttcttttg catgctgcct gctttttgaa
6481 taacaaagcc tgggtcacct ccatatcctc atgggacctc agcaacccca ggccacagtg
6541 gccctaacac cccaacagag gggttcagtg gagtcacagg aacgtgccgc cttccttgat
6601 tgtgtccttt tacttgtttg atctaatgag tgtttgagtg acaagaatag gtatttttcc
6661 atctcaagat tcttaccttc ttcttctcta tattttttcc ttgcagggca accaggacca
6721 aag
//