GenBank-Updates@genbank.bio.net (03/15/91)
LOCUS HUMCOLII 6723 bp ds-DNA PRI 15-MAR-1991 DEFINITION Human alpha-1 collagen type II gene, exons 1, 2 and 3. ACCESSION M60299 KEYWORDS collagen type II alpha-1. SOURCE Human DNA. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 6723) AUTHORS Ryan,M.C., Sieraski,M. and Sandell,L.J. TITLE The human type II procollagen gene: Identification of an additional protein-coding domain and location of potential regulatory sequences in the promoter and first intron JOURNAL Genomics 8, 41-48 (1990) STANDARD full staff_entry FEATURES Location/Qualifiers CDS join(852..936,5010..5216,6707..6723) /product="alpha-1 collagen type II" /gene="COL2A1" /codon_start=852 /partial TATA_signal 667..672 /gene="COL2A1" intron 937..5009 /number=1 /gene="COL2A1" exon 5010..5216 /number=2 /gene="COL2A1" intron 5217..6706 /number=2 /gene="COL2A1" BASE COUNT 1357 a 1865 c 1820 g 1681 t ORIGIN 1 cattcccaac ttcggcctgt gctccagagg aagccttcaa cgcagagctg gatgggggag 61 gggtggaggg cagtcgctgt gaacgtccag gtgggagtct ggggaccagg tactgcaggg 121 aagggctaaa agataggtcg gggtaaccct tcagatctgg ctcagctagc ctgtctccaa 181 gatttaggac tctgaatctc tgtgggctcc tccctgtccc cactcccaaa cgcctgacgc 241 ggtgccccct cgccctccgc tgctccttct accgctttcc ctcctccctc ccatgtcttt 301 tccgtccttg gtctagggct ctcggcctgc gcctctgcaa acaccccctc ccctccaact 361 ccggcagaac tccgagggga ggggccggca cgcccttccc gcctgtggtc agagggggca 421 gccgcagccc cgggtttggg gggcaggggc catctctgcg ccccgcccga tcaggccact 481 cggcgcacta ggggtggagg gcgggaagcg tgactcccag agaggggggt ccggcttggg 541 caggtgcggg cactggcagg gcccaggcgg gctccggggg cgggcggttc aggttacagc 601 ccagctgggg gcagggggcg gcccgcggtt tgggcgagtt cgccagcctc gaaaggggcc 661 gggcgcatat aacgggcgcc gcggcgggga gaagacgcag agcgctgctg ggctgccggg 721 tctcccgctt cctcctcctg ctccaagggc ctcctgcatg agggcgcggt agagacccgg 781 acccgcgccg tgctcctgcc gtttcgctgc gctccgcccg ggcccggctc agccaggccc 841 cgcggtgagc catgattcgc ctcggggctc cccagtcgct ggtgctgctg acgctgctcg 901 tcgccgctgt ccttcggtgt cagggccagg atgtccgtaa gtcttccccc gccgctgcct 961 gcctgcctgc tttccatgcg tccctcagca tccttctccc cggcccgctc cagctctgga 1021 gcccgcggct ccgggctaaa acggctcccg gggtcgtagc gcgccgactt aggcacagga 1081 cacgcagaag ttcaccaaga agagttctgc caatcaagac tctgtcccag ggtcctcggt 1141 gccctacgca gttgcaagta tttgcaggtc cctacgttgc gctagaatac tgaacttgca 1201 aagtgttggc tcggagaagt ttgcgcacag atataaatgg gctcttttcc accagctttg 1261 ataattaggc gcacatgcac acagctcgcc tcttcgaagc acttcgagtt cagcaaaaac 1321 agatctcaac tcatcgaact taggtgaagt aggaaagaga gagcgcgagc gagggagcaa 1381 gcaaacgcca aagggttgac ttcacagcct gtccaaggct tggtggctgg tgggctcaaa 1441 gcagagttag acaaagggga ctaacactct gacactggtg ggctgaaatc ccaggccaca 1501 aagaacggct tccgataggc cctctgagac ctcagcgcct ctttaggtac cctccccctc 1561 ccagctggcc ctggagcaag gtgcagccct agcgctcatc tcgacttccc tccgtccgcc 1621 tgcgcctctc ttctgataaa gggtacagaa acttccagta ggagaggcca tctgaaagac 1681 gataacattc caaccagacc gtgcttttca aatgcccccg aaaatagcgc ccccttcccc 1741 gcggtcttac cccattcccc gccgccccga ggtactacaa tgagttactt ttctaaattc 1801 tggaactcac cgagccaggc tgcgtggtgt gtgtgtgtgt gcgtgtgtgt gtgtgtatgt 1861 gtgtgtaggg aaggggagca ggctggtcga ttggctacgg ttgctacaac tatttcaacc 1921 ggtatagtta gagatggctc ttgtagtcgg tcaatgctgt tcggactgca cctttctacc 1981 ctcttgaagg tcactgtctg ggattatatt caggacaaac gaagcctgga aagtgtatta 2041 ggtagagagg attttttttc cacgtgtttg ggcacgtttc cgacggctgg gattccagcc 2101 tgtctttgta tgttacagat tgtaaatcaa tcgcagaggg aaactcttcg gcgggggaaa 2161 taaaagttct ctgccttcga ggctctgtgg gccctctcct gccaccaggc tgtttccagg 2221 gatagcgtgg aaggcggcgg gctcaggcgg gctttccggt cattagcgcg acggggcagg 2281 gctggagctg cgcgcagctg cgaggagccg ggagcaggag actctggccg gtcacccggt 2341 agtgcgctaa gctggaggcc gctcctgggc atttgaggaa tacagcgtga ctatacgtgg 2401 cctggactca gactgactat atttttgtac taaatttaca agcacacgcc cacaaagctg 2461 tcttcttgac tgacccctgc cttagtgagc aatggaatta gctgggtggc tttaaaataa 2521 ttctcaaatt ctccatccgg tattagggtc gcttgcttaa ttaggcggta gaggtctctc 2581 atcgccgcat ctttcctggg agggagtgat tccacagctt ctccggccca aaccttccag 2641 tcgctcctcc tcccaagagg gagtgtgatt ctgcatccga gaggctgatt ttgcgccctg 2701 gagcatccca ccttttataa cttcccccgc ctgggtcagc ggacccaaag gtgtgacgtg 2761 gggaaatgcg cagtctgcgt ggacgtcagg aatgtcagac acctagagct cggccacacc 2821 cctcctctcc atctttccac gagtttgaga aacttactgg cggcggggtc tttgaccctc 2881 atctgcattc agagccctcg cctccgaaag tgccctggct cagggagaga tctcaatcct 2941 cctttgtgag gcttgtttgc attgggagat tggcagcgat ggcttccaga tggggctgaa 3001 acgctgcccg tatttattta aactggttcc tcgcagagac ctgtgaatcg ggctctgtgt 3061 gcgctcgaga aaagccccat tcatgagaga cgaggtccag tgggttctct cgtactccca 3121 gaccccctct cccacaatgc ccccctgtgc ccagcgccgc cgcctctctc gctccagccc 3181 tggccagagc ggcggtgaag caaaacagtt ccccgaaaga ggtagctttt taattggctt 3241 gccacaaaga atcacttata cggcctgcgg taatgagggg aaccggatca ggcgggccgg 3301 gatgctatcg gcagccgttt tggagcagca attatggtgg tgctgggctc ctccgtccac 3361 acctagggga tcctaggccg gttacgccct ggctcctttc tggggcagtc atttaatccc 3421 acttttcact ctcccggtgt ctgtgagcga gccgtgtcca gagccgcagc caacagagtc 3481 actcagcggc tcttacaccc agcgcccagt ggccccgccc tgcgccggcc gttcccgggc 3541 cgcccttccc cgggaaatct gatccgcacg gggagtggcc cctctcctag catttccccc 3601 tctcctccct gggtcctcat gggcgagggt gggctctcct gtagtctggg ctggagcgca 3661 ttaaccgatg ccccctctcc cacaccttcc tcaccgcctg cattccactg ctccagctat 3721 tttaacaggc gggtgtgtcc ccgcaacttc tgtattttcc ctggaatccc tcaccctcct 3781 gtgattatct tgcccaaagg ctaggcggat ttcttctagt gggaaagtaa aaaggaacgt 3841 ttatcttttg gattttcact ctctttaaag agcagtgggc aggctcgttt ctttctccgc 3901 ctctgggttt gtggctcttt cctattattc atcccctgct gctgctattg ccttggggat 3961 tttgatgaga aaaaccaggc tgggcgctcc ctacgacgtg gtggcctcta acgccttggc 4021 tgctaaggag cgctcttgtc agcacaggtt tcatttgcag catgaattcc agacggcagg 4081 gcgctggtgg aggagactag tccctgctat tcttcctctg cagtcttgga ggaggccagg 4141 cctggactgg caatcttagc cctagccagg tattcaacga cccctgctcc ccaaactggg 4201 gtggcctgtt ttcagatgga ggcagggcct ctccaggcag ggctacaggt ggaggtgagc 4261 actgggggga ctttggctcc actggcctcc taagcagttt attagcctgc ccaagcccaa 4321 gtgtattgtt tgaatgggtc tatcccctcc caattggtcc taatctaata tggtcaaaga 4381 atgagacaag atcctaattc ttataggctc cgtcttttca ccccctttca tttatatacc 4441 tattttggga ggcctcagcg tgcttcatag gattcccaat tttgtaggta gaattttcta 4501 cattccctct tgaatgttag ttgtcaggtg tagtttggct aatccccata attccccaga 4561 ggaaagggca gaagaaggaa gacttctctg ctcctgggcg gtggaggagg tctcgcctct 4621 ccgaattcaa atgctgaaca atgtaggctg gggccacctg gacatataga acttaaaaat 4681 tattttccta aaacatcatt gatttttcca tgtattcaac aaatatttat tatgcacctt 4741 gcaccatgtt gtctattcac cagtgaaaat cttgacccag caatgaaggt ggggggttac 4801 tatactatat tctctttacc cacctaatac gggggagacc aggtgatgga gtgggtggag 4861 ggagttggag ggtgagccgg aagggaggag accaggatat ctgaatagga attctgtcaa 4921 gttgactgca acctctctct ttttctctct ggctccccac cccctccttc ccttggctct 4981 ctgcttctcc ctccccaccc ttggtgcaga ggaggctggc agctgtgtgc aggatgggca 5041 gaggtataat gataaggatg tgtggaagcc ggagccctgc cggatctgtg tctgtgacac 5101 tgggactgtc ctctgcgacg acataatctg tgaagacgtg aaagactgcc tcagccctga 5161 gatccccttc ggagagtgct gccccatctg cccaactgac ctcgccactg ccagtggttg 5221 taatttattt atttcctgtt caacataaat aaattacttg caagcactgc aaacacgctc 5281 ccatagatgc tggtcgtctc tgcaaagcag aggggctagt tatccatggg acctggtagc 5341 tggggtagaa aaggaaaagg ccacttctca cttgcaggtt gaaactgagt gaatgagcct 5401 gagacactag aggggtcctt ctttgcccaa catctccaaa aacatttgct tccaagacac 5461 atgaaggaca gatgtaattc tacaaaaaaa aaaaaaaaaa atcctctctg aaatcatctc 5521 tgcaaattac tagagccact atggagatca aatgctctgt cttggccaat ccacgaatta 5581 attcctcctc tgccaccgat accttgtctt ctccttagaa gacttctatg tatgtggtct 5641 tcagtgtgga gaaagctctg ccagctagtg gggagactgc aggggcagag gctccctctt 5701 tgagttatgg aacattggtg gtagtttcct ctctgctatt acctctcttg gagttgacca 5761 ttaattcaga agcaaaataa taagagaggg aagggctagg ctttgggagt tctagtgggg 5821 acgggtggag acagagcccc atgtatctgc actgtagtgg gtggttataa actcccagtt 5881 agatccagtg ctggtggatg atatatgtgc aggtgacccc ttccccagca ttcaatacaa 5941 gatgtcctat ctcccctgca gagtgagtgg ggacgcttgt gtaggttttt tgggtagctc 6001 ttgctgtccc cttcctgctg aagtagagaa ggccgtggca agggaagtga gaagctgcct 6061 ttccttaaca cttcaccaac actggctccc taatgtgcac attcccagat cctttctgag 6121 gggcccgtgt gagtgaagtg ttgattgcct ttactatttt gctgctactg tgaaggagag 6181 gttattgact ggggtggcac aggctatgat gctccgatgc tcttcataac tcatatgcct 6241 tgctgttttt gtgtttttat ttgtgcttgc ttcaaggaga cccagctcta atgtaagacc 6301 tttctaagta cctaactctt cctctgggag ggcttggggt tcgggaacgg ctccctacct 6361 gtggggggaa gagagactga atctgtgctt tccttcttgt ggctgattag atcttgagct 6421 cttcattgcc tttttgtgct gcccttgctc ctttcttttg catgctgcct gctttttgaa 6481 taacaaagcc tgggtcacct ccatatcctc atgggacctc agcaacccca ggccacagtg 6541 gccctaacac cccaacagag gggttcagtg gagtcacagg aacgtgccgc cttccttgat 6601 tgtgtccttt tacttgtttg atctaatgag tgtttgagtg acaagaatag gtatttttcc 6661 atctcaagat tcttaccttc ttcttctcta tattttttcc ttgcagggca accaggacca 6721 aag //