GenBank-Updates@genbank.bio.net (03/21/91)
LOCUS RABHBZ2 1859 bp ds-DNA MAM 21-MAR-1991
DEFINITION Rabbit zeta-2 globin pseudogene, complete cds.
ACCESSION J03884 M63143
KEYWORDS globin; hemoglobin; pseudogene.
SEGMENT 2 of 3
SOURCE Rabbit DNA, clones lambda-R-[zeta-G-pi-1,alpha-G-pi-20].
ORGANISM Oryctolagus cuniculus
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Lagomorpha; Leporidae.
REFERENCE 1 (bases 1 to 1859)
AUTHORS Cheng,J.-F., Krane,D.E. and Hardison,R.C.
TITLE Nucleotide sequence and expression of rabbit globin genes zeta-1,
zeta-2, and zeta-3: Pseudogenes generated by block duplications are
transcriptionally competent
JOURNAL J. Biol. Chem. 263, 9981-9993 (1988)
STANDARD full staff_entry
REFERENCE 2 (sites)
AUTHORS Krane,D.E., Clark,A.G., Cheng,J.-F. and Hardison,R.C.
TITLE Subfamily relationships and clustering of rabbit C repeats
JOURNAL Mol. Biol. Evol. 8, 1-30 (1991)
STANDARD full staff_review
COMMENT The first exon is completely deleted in hte zeta-2 globin
pseudogene.
FEATURES Location/Qualifiers
CDS join(1229..1431,1517..1644)
/note="pseudo-zeta-2 globin"
/codon_start=1229
repeat_unit 257..585
/note="C repeat number 24"
repeat_unit 775..1151
/note="C repeat number 25"
exon 1229..1431
/pseudo
/note="pseudo-zeta-2 globin, exon 1"
intron 1432..1516
/note="HBZ2 intron"
exon 1517..1644
/pseudo
/note="pseudo-zeta-2 globin, exon 2"
polyA_signal 1720..1725
/pseudo
/note="pseudo-zeta-2 globin, exon 2"
BASE COUNT 361 a 582 c 574 g 342 t
ORIGIN Undetermined number of bp after segment 1.
1 ggatccgcag ctcagtaggc taatcctcgg cctgcggcgc cggcaccccg ggttctagtc
61 ccggctgggc accggattct gtccggttgc tcctcttcca gtccagctct ctgccctgcc
121 cggagtgcag tggaggatgg cccaggtcct tgggccctgc tcccgcatgg gagaccagga
181 ggaagcacct ggctccgggc ttcggatcag catggtgtac cggccgcagc agccattgga
241 gggtgaacca atggaaaagg aatgagcaca gcatggggtt gctgtcatgg cacagggccc
301 tgtggcttag ccgcctgcac ctggcatcaa actggagtcc ctggcgctcc acctctgacc
361 cagctccatg ctaccagcct gggaaaagca ggggacggtg gccccaagtg tttgggccct
421 tgaacccacc tgggagacct gggtggagcc cctctcctgg tttcagcctg ggtcacttaa
481 ggcctttgtg gcagcagagc tgtgggccgg cagtggagga gctctctttc cctgtctctc
541 ccgctctctt ggaagtcttt caataaatca ataaaagaga aggaagcctg tgttcccacg
601 gagcccaccc cgtgaatgtt cacagcggct gtctgggcca tagcaaccca aatgtcctca
661 aggcgtgaac ggaccacgtc cggccttgcc ccagagagga gtcgagtgct gccgcccagc
721 cccgcccgga tgaaggggaa ggaggcatct gcacagactg caccgacgac tccatggaca
781 cgacgttcct tttgggattt acttattgga aaagctgagt tgtagagaca gagacatggc
841 gagagaaaga gagagaggga cacaaagaga gagagggaca gagagagaga gggacagaga
901 gagatcttcc atccagggtt cactccacaa acggcttcga aggctgggac tgggccaggc
961 tggagccagg agcctgattc catcctgtgt ggcacggagg tggcaggcac ccaggctctg
1021 gggccatctt ctgctgcttt cccaggcact gtaagaggga gctggactgt gtggcaggaa
1081 ggaacagggg agcaggggct gggctgggcc gcagtccctg tctgaaatgc ccgtgtgcgc
1141 tccctgtgga ctgcacgctg ggttttgcct tgcaaagact gtgtaaaatg tgctttcctg
1201 actgccgggt gtggggcccc ctcccccggc tcttcctcag attcccaaat accaggaccc
1261 acttctcgca catcccccgc atacggcctc ggcgcaggtg cacactcatg gcgtcaagct
1321 ggcatggcgg tggacaacgc ggtcaagaac atggacaact tggatggcac gctgtccacg
1381 ctgaggcaca cgctccccta catgcttcgc gtggacccgg tcaacttcag ggtgagcgca
1441 gagcacagac tccctcctgt gggcagggtt ggggtctggg gctgcccacc cgccctgact
1501 gccccctgcc acgcagctgc tgcccaactg cctgctggtc accctggccg ggtacctgtc
1561 cagggacttc accgccgagt cgcaactcac ctggacaagt tcctgcgcca cgtgttcatc
1621 atcctgaccg agaagtaccc ctgagaacac tcagcacccc tggacagccg gacacccctc
1681 ccgtgtccct gacccgcccg ggcaccctct ccactcccca ataaactcat gcagaaggat
1741 gagctgtgtc ccgcgttcct tgtgccaggg gaaaggggca gaagctgtcc gcagcgggcc
1801 gggtcggtgt ccgcagtgca ggccgactcc cgcgacccta ggggctgcac tggggatcc
//