GenBank-Updates@genbank.bio.net (03/29/91)
LOCUS EIAPOLENV 3779 bp ss-RNA VRL 29-MAR-1991
DEFINITION Equine infectious anemia virus pol, and env genes, complete cds.
ACCESSION M58039
KEYWORDS env protein; envelope protein; pol protein.
SOURCE Equine infectious anemia virus (strain Massachusetts,
individual_isolate MA-1) RNA, clone EIAV253.
ORGANISM Equine infectious anemia virus
Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
Retroviridae; Lentivirinae.
REFERENCE 1 (bases 1 to 3779)
AUTHORS Carpenter,S., Alexandersen,S., Long,M., Perryman,S. and Chesebro,B.
TITLE Identification of a hypervariable region in the long terminal
repeat of equine infectious anemia virus
JOURNAL J. Virol. 65, 1605-1610 (1991)
STANDARD simple staff_entry
FEATURES Location/Qualifiers
CDS 16..669
/product="pol protein"
/gene="pol"
/codon_start=16
CDS 859..3438
/note="5' end unsure. This is the first atg after the
stop codon."
/product="envelope protein"
/gene="env"
/codon_start=859
LTR 3456..3779
repeat_unit 3665..3737
/note="LTR R region"
BASE COUNT 1278 a 632 c 828 g 1041 t
ORIGIN
1 cctgcaggtt gtgtcatgag atctcctaat cattggcagg cagattgcac acatttggac
61 aataagataa tattgacttt tgtagagtca aattcaggat acatacatgc tacattattg
121 tcaaaagaaa atgcattatg tacttcattg gctattttag aatgggcaag attgttttca
181 ccaaagtcct tacacacaga taacggcact aattttgtgg cagaaccagt tgtaaatttg
241 ttgaagttcc taaagatagc acataccaca ggaataccat atcatccaga aagtcagggt
301 attgtagaaa gggcaaatag gaccttgaaa gagaagattc aaagtcatag agacaacact
361 caaacactgg aggcagcttt acaacttgct ctcattactt gtaacaaagg gagggaaagt
421 atgggaggac agacaccatg ggaagtattt atcactaatc aagcacaagt aatacatgag
481 aaacttttac tacagcaagc acaatcctcc aaaaaatttt gtttttacaa aatccctggt
541 gaacatgatt ggaagggacc tactagggtg ctgtggaagg gtgatggtgc agtagtagtt
601 aatgatgaag gaaaggaaat aattgctgta ccattaacca ggactaagtt actaataaag
661 ccaaattgag tattgttgca ggaagcaaga cccaactacc attgtcagct gtgtttcctg
721 aggtctctag gaattgatta cctcgatgct tcattaagga agaagaataa acaaagactg
781 aaggcaatcc aacaaggaag acaacctcaa tatttgttat aaggtttgat atatgggatt
841 atttggtaaa ggggtaacat ggtcagcatc gcattctatg gggggatccc agggggaatc
901 tcaaccccta ttacccaaca gtcagaaaaa tctaagtgtg aggagaacac aatgtttcaa
961 ccttattgtt ataataatga cagtaagaac agcatggcag aatcgaagga agcaagagac
1021 caagaaatga acctgaaaga agaatctaaa gaagaaaaaa gaagaaatga ctggtggaaa
1081 ataggtatgt ttctgttatg cttagcagga actactggag gaatactttg gtggtatgaa
1141 ggactcccac agcaacatta tatagggttg gtggcgatag ggggaagatt aaacggatct
1201 ggccaatcaa atgctataga atgctggggt tccttcccgg ggtgtagacc atttcaaaat
1261 tacttcagtt atgagaccaa tagaagcatg catatggata ataatactgc tacattatta
1321 gaagcttatc atagagagat aacattcatt tataagtctt cttgcacaga tagtgatcat
1381 tgtcaagagt atcaatgtaa aaaagttaat cttaattcct ctgactcctc taactctgta
1441 cgtgttgagg atgtaacgaa cacagcggaa tattggggat ttaaatggct agaatgtaat
1501 caaacagaaa attttaagac tatattagta cctgaaaatg aaatggtaaa tatcaatgat
1561 agggatacct ggatacctaa ggggtgtaat gagacgtggg caagagtgaa acgttgtcct
1621 atagatattt tatatgggat acatccaatc aggctgtgtg tacagccacc attttttctg
1681 gtacaggaga aagggattgc tgatacttct agaattggca attgtgggcc aaaaatattt
1741 cttggggttt tagaagataa taagggagta gtacgggggg attatacagc ttgcaatgtg
1801 cgtcgcctaa atataaatag aaaggattat acagggagct atcaagtacc tatattttat
1861 acatgtactt tcactaacat aacttcctgc aataatgagc caataatcag tgttatcatg
1921 tatgaaacaa accaggtaca atatttattg tgtaataata ataatagtaa taattataat
1981 tgtgtagtac aaagttttgg agttatagga caggcacact tagaactgcc tagacctaac
2041 aaaagaataa ggaaccaaag ctttaaccaa tataactgct ctataaataa caaaacagaa
2101 ttagaaacat ggaagttagt aaagacttct ggcgtaactc ctttacctat ttcttctgaa
2161 gctaacactg gactaattag acataagaga gattttggta taagtgcaat agtggcagct
2221 attgtagccg ctactgctat tgctgctagc gctactatgt cttatgttgc tctaactgag
2281 gttaacaaaa taatggaagt acaaaaccat acttttgagg tagaaaatag tactctaaat
2341 ggtatggatt taatagaacg acaaataaag atattatatg ctatgattct tcaaacacat
2401 gcagatgttc aactgttaaa ggaaagacaa caggtagagg agacatttaa tttaattgga
2461 tgtatagaaa gaacacatgt attttgtcat actggtcatc cctggaatat gtcatgggga
2521 catttaaatg agtcaacaca atgggatgac tgggtaagca aaatggaaga tttaaatcaa
2581 gagatactaa ctacacttca tggagctagg aacaatttgg cacaatccat gataacattc
2641 aatacaccag atagtatagc tcaatttgga aaagaccttt ggagtcatat tggaaattgg
2701 attcctggat tgggagcttc cattataaaa tatatagtga tgtttttgct tatttatttg
2761 ttactaacct cttcgcctaa gatcctcagg gccctctgga aagtggccag tggtgcaggg
2821 tcctccggca gtcgttacct gaagaaaaaa ttccatcaca aacatgcatc gcgagaagac
2881 acctgggacc aggcccaaca caacatacac ctagcaggcg tgaccggtgg atcaggggac
2941 aaatactaca agcagaagta ctccaggaac gactggaatg gagaatcaga ggagtacaac
3001 aggtggccaa agagctgggt gaagtcattc gaggcatttg gagagagcta tatttccgag
3061 aagaccaaag gggagatttc tcagcctggg gcggctatca acgagcacaa gaacggctct
3121 ggggggaaca atcctcacca agagtcctta gacctggaga ttcgaagcga aggaggaaac
3181 atttatgact gttgcattaa agcccaagaa ggaactctcg ctatcccttg ctgtggattt
3241 cccttatggc tattttgggg actagtaatt atagtaggac gcatagcagg ctatggatta
3301 cgtggactcg ctgttataat aaggatttgt attagaggct taaatttgat atttgaaata
3361 atcagaaaaa tgcttgatta tattggaaga gctttaaatc ctggcacatc tcatgtatca
3421 atgcctcagt atgtttagaa aaacaagggg ggaactgtgg ggtttttatg aggggtttta
3481 taaatgatta taagagtaaa aagaaagttg ctgatgctct cataaccttg tataacccaa
3541 aggactagct catgttgcta ggcaactaaa ccgcaatatc ctgtagttcc tcatttgcgt
3601 tccgcatttg tgacgtgtta agttcctgtt tttacagtat ataagtgctt gtattctgac
3661 aattgggcac tcagattctg cggtctgagt cccttctctg ctaggctgaa aatgcctttg
3721 taataaatat aattctctac tcagtccctg tctctagttt gtctgttcga gatcctaca
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