GenBank-Updates@genbank.bio.net (03/29/91)
LOCUS EIAPOLENV 3779 bp ss-RNA VRL 29-MAR-1991 DEFINITION Equine infectious anemia virus pol, and env genes, complete cds. ACCESSION M58039 KEYWORDS env protein; envelope protein; pol protein. SOURCE Equine infectious anemia virus (strain Massachusetts, individual_isolate MA-1) RNA, clone EIAV253. ORGANISM Equine infectious anemia virus Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Retroviridae; Lentivirinae. REFERENCE 1 (bases 1 to 3779) AUTHORS Carpenter,S., Alexandersen,S., Long,M., Perryman,S. and Chesebro,B. TITLE Identification of a hypervariable region in the long terminal repeat of equine infectious anemia virus JOURNAL J. Virol. 65, 1605-1610 (1991) STANDARD simple staff_entry FEATURES Location/Qualifiers CDS 16..669 /product="pol protein" /gene="pol" /codon_start=16 CDS 859..3438 /note="5' end unsure. This is the first atg after the stop codon." /product="envelope protein" /gene="env" /codon_start=859 LTR 3456..3779 repeat_unit 3665..3737 /note="LTR R region" BASE COUNT 1278 a 632 c 828 g 1041 t ORIGIN 1 cctgcaggtt gtgtcatgag atctcctaat cattggcagg cagattgcac acatttggac 61 aataagataa tattgacttt tgtagagtca aattcaggat acatacatgc tacattattg 121 tcaaaagaaa atgcattatg tacttcattg gctattttag aatgggcaag attgttttca 181 ccaaagtcct tacacacaga taacggcact aattttgtgg cagaaccagt tgtaaatttg 241 ttgaagttcc taaagatagc acataccaca ggaataccat atcatccaga aagtcagggt 301 attgtagaaa gggcaaatag gaccttgaaa gagaagattc aaagtcatag agacaacact 361 caaacactgg aggcagcttt acaacttgct ctcattactt gtaacaaagg gagggaaagt 421 atgggaggac agacaccatg ggaagtattt atcactaatc aagcacaagt aatacatgag 481 aaacttttac tacagcaagc acaatcctcc aaaaaatttt gtttttacaa aatccctggt 541 gaacatgatt ggaagggacc tactagggtg ctgtggaagg gtgatggtgc agtagtagtt 601 aatgatgaag gaaaggaaat aattgctgta ccattaacca ggactaagtt actaataaag 661 ccaaattgag tattgttgca ggaagcaaga cccaactacc attgtcagct gtgtttcctg 721 aggtctctag gaattgatta cctcgatgct tcattaagga agaagaataa acaaagactg 781 aaggcaatcc aacaaggaag acaacctcaa tatttgttat aaggtttgat atatgggatt 841 atttggtaaa ggggtaacat ggtcagcatc gcattctatg gggggatccc agggggaatc 901 tcaaccccta ttacccaaca gtcagaaaaa tctaagtgtg aggagaacac aatgtttcaa 961 ccttattgtt ataataatga cagtaagaac agcatggcag aatcgaagga agcaagagac 1021 caagaaatga acctgaaaga agaatctaaa gaagaaaaaa gaagaaatga ctggtggaaa 1081 ataggtatgt ttctgttatg cttagcagga actactggag gaatactttg gtggtatgaa 1141 ggactcccac agcaacatta tatagggttg gtggcgatag ggggaagatt aaacggatct 1201 ggccaatcaa atgctataga atgctggggt tccttcccgg ggtgtagacc atttcaaaat 1261 tacttcagtt atgagaccaa tagaagcatg catatggata ataatactgc tacattatta 1321 gaagcttatc atagagagat aacattcatt tataagtctt cttgcacaga tagtgatcat 1381 tgtcaagagt atcaatgtaa aaaagttaat cttaattcct ctgactcctc taactctgta 1441 cgtgttgagg atgtaacgaa cacagcggaa tattggggat ttaaatggct agaatgtaat 1501 caaacagaaa attttaagac tatattagta cctgaaaatg aaatggtaaa tatcaatgat 1561 agggatacct ggatacctaa ggggtgtaat gagacgtggg caagagtgaa acgttgtcct 1621 atagatattt tatatgggat acatccaatc aggctgtgtg tacagccacc attttttctg 1681 gtacaggaga aagggattgc tgatacttct agaattggca attgtgggcc aaaaatattt 1741 cttggggttt tagaagataa taagggagta gtacgggggg attatacagc ttgcaatgtg 1801 cgtcgcctaa atataaatag aaaggattat acagggagct atcaagtacc tatattttat 1861 acatgtactt tcactaacat aacttcctgc aataatgagc caataatcag tgttatcatg 1921 tatgaaacaa accaggtaca atatttattg tgtaataata ataatagtaa taattataat 1981 tgtgtagtac aaagttttgg agttatagga caggcacact tagaactgcc tagacctaac 2041 aaaagaataa ggaaccaaag ctttaaccaa tataactgct ctataaataa caaaacagaa 2101 ttagaaacat ggaagttagt aaagacttct ggcgtaactc ctttacctat ttcttctgaa 2161 gctaacactg gactaattag acataagaga gattttggta taagtgcaat agtggcagct 2221 attgtagccg ctactgctat tgctgctagc gctactatgt cttatgttgc tctaactgag 2281 gttaacaaaa taatggaagt acaaaaccat acttttgagg tagaaaatag tactctaaat 2341 ggtatggatt taatagaacg acaaataaag atattatatg ctatgattct tcaaacacat 2401 gcagatgttc aactgttaaa ggaaagacaa caggtagagg agacatttaa tttaattgga 2461 tgtatagaaa gaacacatgt attttgtcat actggtcatc cctggaatat gtcatgggga 2521 catttaaatg agtcaacaca atgggatgac tgggtaagca aaatggaaga tttaaatcaa 2581 gagatactaa ctacacttca tggagctagg aacaatttgg cacaatccat gataacattc 2641 aatacaccag atagtatagc tcaatttgga aaagaccttt ggagtcatat tggaaattgg 2701 attcctggat tgggagcttc cattataaaa tatatagtga tgtttttgct tatttatttg 2761 ttactaacct cttcgcctaa gatcctcagg gccctctgga aagtggccag tggtgcaggg 2821 tcctccggca gtcgttacct gaagaaaaaa ttccatcaca aacatgcatc gcgagaagac 2881 acctgggacc aggcccaaca caacatacac ctagcaggcg tgaccggtgg atcaggggac 2941 aaatactaca agcagaagta ctccaggaac gactggaatg gagaatcaga ggagtacaac 3001 aggtggccaa agagctgggt gaagtcattc gaggcatttg gagagagcta tatttccgag 3061 aagaccaaag gggagatttc tcagcctggg gcggctatca acgagcacaa gaacggctct 3121 ggggggaaca atcctcacca agagtcctta gacctggaga ttcgaagcga aggaggaaac 3181 atttatgact gttgcattaa agcccaagaa ggaactctcg ctatcccttg ctgtggattt 3241 cccttatggc tattttgggg actagtaatt atagtaggac gcatagcagg ctatggatta 3301 cgtggactcg ctgttataat aaggatttgt attagaggct taaatttgat atttgaaata 3361 atcagaaaaa tgcttgatta tattggaaga gctttaaatc ctggcacatc tcatgtatca 3421 atgcctcagt atgtttagaa aaacaagggg ggaactgtgg ggtttttatg aggggtttta 3481 taaatgatta taagagtaaa aagaaagttg ctgatgctct cataaccttg tataacccaa 3541 aggactagct catgttgcta ggcaactaaa ccgcaatatc ctgtagttcc tcatttgcgt 3601 tccgcatttg tgacgtgtta agttcctgtt tttacagtat ataagtgctt gtattctgac 3661 aattgggcac tcagattctg cggtctgagt cccttctctg ctaggctgaa aatgcctttg 3721 taataaatat aattctctac tcagtccctg tctctagttt gtctgttcga gatcctaca //