GenBank-Updates@genbank.bio.net (03/29/91)
LOCUS HPA18F 7423 bp ss-RNA VRL 29-MAR-1991 DEFINITION Hepatitis A virus polyprotein RNA, complete cds. ACCESSION M59808 KEYWORDS hepatitis A; polyprotein. SOURCE Hepatitis A virus (strain HM175, isolate 18f), cDNA to genomic RNA. ORGANISM Hepatitis A virus Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Picornaviridae; Enterovirus. REFERENCE 1 (bases 1 to 7423) AUTHORS Lemon,S.M., Murphy,P.C., Shields,P.A., Ping,L.-H., Feinstone,S.M., Cromeans,T. and Jansen,R.W. TITLE Antigenic and genetic variation in cytopathic Hepatitis A virus variants during persistent infection: Evidence for genetic recombination JOURNAL Unpublished (1990) STANDARD full staff_entry FEATURES Location/Qualifiers mat_peptide 5929..7395 /product="viral protein" /label=3D /codon_start=5929 mat_peptide 5272..5928 /product="viral protein" /label=3C /codon_start=5272 mat_peptide 5203..5271 /product="viral protein" /label=3B /codon_start=5203 mat_peptide 4984..5202 /product="viral protein" /label=3A /codon_start=4984 mat_peptide 3979..4983 /product="viral protein" /label=2C /codon_start=3979 mat_peptide 3658..3978 /product="viral protein" /label=2B /codon_start=3658 mat_peptide 3091..3657 /product="viral protein" /label=2A /codon_start=3091 mat_peptide 2191..3090 /product="viral protein" /label=vp1 /codon_start=2191 mat_peptide 1453..2190 /product="viral protein" /label=vp3 /codon_start=1453 mat_peptide 787..1452 /product="viral protein" /label=vp2 /codon_start=787 CDS 718..7398 /product="viral protein" /codon_start=718 mat_peptide 718..786 /product="viral protein" /label=vp4 /codon_start=718 BASE COUNT 2173 a 1196 c 1622 g 2432 t ORIGIN 1 gtccctcttg gaagtccatg gtgaggggac ttgatacctc accgccgttt gcctaggcta 61 taggctaaat tttccctttc ccttttccct ttcctattcc ctttgttttg cttgtaaata 121 ttgatttgta aatattgatt cctgcaggtt cagggttctt aaatctgttt ctctataaga 181 acactcattt cacgctttct gtcttctttc ttccagggct ctccccttgc cctaggctct 241 ggccgttgcg cccggcgggg tcaactccat gattagcatg gagctgtagg agtctaaatt 301 ggggacacag atgtttggaa cgtcaccttg cagtgttaac ttggctttca tgaatctctt 361 tgatcttcca caaggggtag gctacgggtg aaacctctta ggctaatact tctatgaaga 421 gatgccttgg atagggtaac agcggcggat attggtgagt tgttaagaca aaaaccattc 481 aacgccggag gactgactct catccagtgg atgcattgag tggattgact gtcggggctg 541 tctttaggct taattccaga cctctctgtg cttggggcaa acatcatttg gccttaaatg 601 ggattctgtg agaggggatc cctccattgc cagctggact gttctttggg gccttatgtg 661 gtgtttgccg ctgaggtact caggggcatt taggtttttc ctcattctta aataataatg 721 aacatgtcta gacaaggtat tttccagact gttgggagtg gtcttgacca catcctgtct 781 ttggcagaca ttgaggaaga gcaaatgatt caatcagttg ataggactgc agtgactggt 841 gcttcttatt ttacttctgt ggatcaatct tcagttcata cagctgaggt tggatcacac 901 caggttgaac ctttgagaac ctctgttgat aaacccggtt caaagaggac tcagggagag 961 aaatttttct tgattcattc tgcagattgg cttactacac atgctctttt ccatgaagtt 1021 gcaaaattgg atgtggtgaa attattatac aatgagcagt ttgctgttca agggttgttg 1081 agataccata catatgcaag atttggcatt gaaattcaag ttcagataaa ccctacacct 1141 ttccaacagg ggggattgat ctgtgctatg gttcctggtg accagagcta tggttctata 1201 gcatcattga ctgtttatcc tcatggtttg ttaaattgca atattaacaa tgtggttaga 1261 ataaaggttc catttattta cacaagaggt gcttaccact ttaaagatcc acaataccca 1321 gtttgggaat tgacaattag agtttggtca gaattaaata ttgggacagg aacttcagct 1381 tatacttcac tcaatgtttt agctagattt acagatttgg agttgcatgg attaactcct 1441 ctttctacac aaatgatgag aaatgaattt agggtcagta ctactgagaa tgtggtgaat 1501 ctgtcaaatt atgaagatgc aagagcaaag atgtcttttg ctttggatca ggaagattgg 1561 aaatctgatc cgtcccaggg tggtgggatc aaaattactc attttactac ttggacatct 1621 attccaactt tggctgctca gtttccattt aatgcttcag actcagttgg tcaacaaatt 1681 aaagttattc cagttgaccc atattttttc caaatgacaa ataaaaatcc tgaccaaaaa 1741 tgtataactg ctttggcttc tatttgtcag atgttttgtt tttggagagg agatcttgtc 1801 tttgattttc aagtttttcc caccaaatat cattcaggta gattactgtt ttgttttgtt 1861 cctggcaatg agctaataga tgtttctgga atcacattaa agcaagcaac tactgctcct 1921 tgtgcagtaa tggatattac aggagtgcag tcaactttga gatttcgtgt tccctggatt 1981 tctgacactc cttacagagt gaacaggtat acaaagtcag cacatcagaa aggtgagtac 2041 actgccattg ggaagcttat tgtgtattgt tataacagat tgacctctcc ttctaacgtt 2101 gcttcccatg tcagagtgaa tgtttatctt tcagcaatta acttggaatg ttttgctcct 2161 ctttatcatg ctatggatgt tactacacaa gttggagatg attctggagg tttttcaaca 2221 acagtttcta cagaacagaa tgttccagat ccccaagttg gtataacaac catgaaagat 2281 ttgaaaggaa aagctaacag agggaaaatg gatgtttcag gagtacaagc acctgtggga 2341 gctatcacaa caattgagga tccagtttta gcaaagaaag tacctgagac atttcctgaa 2401 ttgaaacctg gagaatccag acatacatca gatcatatgt ccatctacaa gtttatggga 2461 aggtctcatt tcttgtgcac ttttacattc aattcaaata ataaagagta cacatttcct 2521 ataaccttgt cttcaacctc taatcctcct catggtttgc catcaacact gaggtggttt 2581 ttcaacttgt ttcagttgta tagagggcct ttagatctga caattattat tacaggagca 2641 actgatgtag atggcatggc ctggtttact ccagtaggtc ttgccgttga tactccttgg 2701 gtagagaagg agtcagcttt gtctattgac tacaaaactg ctcttggagc tgtcagattt 2761 aacacaagga gaacagggaa cattcagatt agattaccat ggtattctta tttatatgct 2821 gtgtctggag cactggatgg tttgggtgac aagacagatt ctacatttgg attggtttct 2881 attcagattg caaattacaa tcattctgat gaatacttgt cttttagttg ttatttgtct 2941 gtcacagaac aatcagagtt ttattttccc agagctccat tgaactcaaa tgccatgtta 3001 cccactgaat caatgatgag cagaattgca gctggagact tggagtcatc agtggatgat 3061 cctagatcag aggaagataa aagatttgag agtcatatag aatgcaggaa gccatataaa 3121 gaactgagat tagaagttgg gaaacaaaga ctcaagtatg ctcaggaaga attgtcaaat 3181 gaagtacttc caccccctag gaaaatgaag ggactgtttt cacaagccaa tatttctctt 3241 ttttatactg aggagcatga aatgatgaag ttttcctgga gaggtgtgac tgctgatact 3301 agagctttaa ggaggtttgg attctctttg gccgcaggca gaagtgtgtg gactcttgaa 3361 atggatgctg gggttcttac tgggagactg attagattga atgatgagaa atggacagaa 3421 atgaaggatg acaagattgt ttcattgatt gaaaagttta caagtaacaa atattggtcc 3481 aaagtgaatt tcccacatgg gatgttggat cttgaagaaa ttgctgccaa ttctaaggat 3541 tttcctaaca tgtctgaaac ggatttgtgt ttcttgctgc attggttaaa tccaaagaaa 3601 attaatttag cagatagaat gcttggattg tctggagttc aggaaattaa agaacaaggt 3661 gttggattaa tagcagagtg tagaactttc ttacattcta ttgctggaac tttaaaatct 3721 atgatgtttg gatttcatca ttctgtgact gttgaaatta taaacactgt gctctgtttt 3781 gttaagagtg gaattttgct ttatgtaata caacaattga atcaggatga acattctcac 3841 ataattggtc tgttgagagt catgaattat gtagatattg gttgttcagt tatttcatgt 3901 ggcaaagttt tttccaaaat gctggaaaca gtctttaatt ggcaaatgga ctccagaatg 3961 atggagttaa ggactcagag tttttccaac tggttaagag atatttgttc tgggatcacc 4021 atttttaaaa acttcaagga tggaatttgt tggctttata caaaattaaa ggacttttat 4081 gaagtgaatt atggcaagaa gaaggacatt ttaaatattc ttaaagataa ccaacaaaaa 4141 atagagaaag ccattgagga agccgataaa ttttgcattt tgcaaatcca agatgtggaa 4201 aaatctgaac agtatcagaa aggggttgac ttgatacaaa aattgagaac tgtttattca 4261 atggctcagg ttgatccaaa tttaatggtt catttgtcac ctttgagaga ttgtatagca 4321 agagttcatc agaaacttaa aaaccttgga tttataaatc aggcaatggt aacgagatgt 4381 gagccagttg tttgttattt acatggcaaa agagggggag gaaagagctt aacatcaatt 4441 gcattggcaa ccaaaatttg taaacattat ggtgttgagc ctgaaaagaa tatctatact 4501 aaacctgtgg cttcagatta ctgggatgga tatagtggac aattagtttg catcattgat 4561 gatattggcc aaaacacaac agatgaggac tggtcagatt tttgtcagtt agtgtcagga 4621 tgtccaatga gattaaacat ggcctctctt gaggagaagg gtaggcattt ttcttctcct 4681 tttataatag caacttcaaa ttggtcaaat ccaagtccaa aaacagttta tgttaaggaa 4741 gcaattgacc gcagactcca tttcaaggtt gaagttaaac ctgcttcatt tttcaaaaat 4801 cctcacaatg atatgttgaa tgttaattta gctaaaacaa atgatgcaat caaagatatg 4861 tcttgtgttg atttgataat ggatggacat aatgtttcat tgatggattt gctcagttct 4921 ttagtcatga cagttgatat tagaaaacaa aacatgactg aattcatgga gttgtggtct 4981 cagggaattt cagatgataa tgatagtgca gtagctgagt ttttccagtc ttttccatct 5041 ggtgaaccat cgaactctaa attatctggc tttttccaat ctgttactaa tcacaagtgg 5101 gttgctgtgg gagctgcagt tggcattctt ggagtgctcg ttggaggatg ggttgtgtat 5161 aagcatttct cccacaaaga ggaagaacca atcccagctg aaggggtata tcatggtgta 5221 actaagccca agcatgtgat taaattagat gcagatccag tagaatctca gtcaactttg 5281 gaaatagcag gactggttag gaagaacttg gttcagtttg gagttggaga gaagaatgga 5341 tgtgtgagat gggttatgaa tgccttggga gtgaaagatg attggctgct tgtgccttcc 5401 catgcttata aatttgagaa agattatgaa atgatggagt tttattttaa tagaggtgga 5461 acttactatt caatttcagc tggtaatgtt gttattcaat ctttggatgt gggattccag 5521 gatgttgttc tgatgaaggt tcctacaatt cctaagttta gagatattac tgagcatttt 5581 attaagaaag gggatgtgcc tagagctttg aatcgcctgg caacattagt gacaactgta 5641 aatggaaccc ctatgttaat ttctgagggc ccactaaaga tggaagagaa agctacttat 5701 gttcataaga aaaatgatgg tacaacagtt gatttaactg tggatcaggc atggagagga 5761 aaaggcgaag gtcttcctgg aatgtgtggt ggggccttgg tttcatcgaa tcaatctata 5821 cagaatgcaa tcttgggcat ccatgttgct ggaggaaatt caattcttgt tgcaaaattg 5881 gttactcaag aaatgttcca aaatattgat aagaaaattg aaagtcagag aattatgaaa 5941 gtggagttta ctcagtgttc aatgaatgtg gtctccaaaa cgctttttag aaagagtccc 6001 atttatcatc acattgataa aaccatgatt aattttcctg cagctatgcc cttttctaaa 6061 gctgaaattg atccaatggc tgtgatgtta tctaagtatt cattacctat tgtagaagaa 6121 ccagagggtt ataaagaggc ttcaattttt tatcaaaata aaatagtggg taagactcag 6181 ttagttgatg attttctaga tcttgatatg gccattacag gggccccagg aattgatgct 6241 atcaacatgg attcatctcc tggatttcct tatgtccagg agaagttgac caaaagagat 6301 ttaatttggt tggatgaaaa tggtttattg ctgggagttc atccaagatt ggctcagaga 6361 atcttattca atactgtcat gatggaaaat tgttctgatt tggatgttgt ttttacaacc 6421 tgtccaaaag atgaattgag gccattagag aaagtgttgg aatcaaaaac aagagctatt 6481 gatgcttgtc ctctggatta cacaattttg tgccgaatgt attggggtcc agctattagt 6541 tattttcatt tgaatccagg tttccataca ggtgttgcta ttggcataga tcctgataaa 6601 cagtgggatg aactatttaa aacaatgata agattcggag atgttggtct tgatttagat 6661 ttctctgctt ttgatgctag tcttagtcca tttatgatta gagaagcagg tagaatcatg 6721 agtgaactat ctggaactcc atcccatttt ggcacagctc ttatcaatac tatcatttat 6781 tccaagcatt tgctgtataa ctgttgttac catgtctgtg gttcaatgcc ctctgggtct 6841 ccttgtacag ctttgctaaa ttcaattatt aataatgtca atttgtatta tgtgttttct 6901 aagatatttg gaaagtctcc agttttcttt tgtcaggctt tgaagattct ctgttatgga 6961 gatgatgttt taatagtttt ctctcgagat gttcagattg ataatcttga tttgattgga 7021 caaaaaattg tagatgagtt taagaaactt ggcatgacag ctacttctgc tgacaagaat 7081 gtacctcagc tgaaaccagt ttcggaattg acttttctca aaagatcttt caatttggta 7141 gaggatagaa ttagacctgc aatttcggaa aaaacaattt ggtctttaat agcatggcag 7201 agaagtaacg ctgagtttga gcagaactta gaaaatgctc agtggtttgc ttttatgcat 7261 ggctatgagt tttatcagaa attctattat tttgttcagt cctgtttgga gaaagagatg 7321 atagaataca gacttaaatc ttatgattgg tggagaatga gattttatga ccagtgtttc 7381 atttgtgacc tttcatgatt tgtttaaatg aactttctta aaa //
GenBank-Updates@genbank.bio.net (03/29/91)
LOCUS HPA43C 7419 bp ss-RNA VRL 29-MAR-1991 DEFINITION Hepatitis A virus polyprotein RNA, complete cds. ACCESSION M59809 KEYWORDS hepatitis A; polyprotein. SOURCE Hepatitis A virus (strain HM175, isolate 43c), cDNA to genomic RNA. ORGANISM Hepatitis A virus Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Picornaviridae; Enterovirus. REFERENCE 1 (bases 1 to 7419) AUTHORS Lemon,S.M., Murphy,P.C., Shields,P.A., Ping,L.-H., Feinstone,S.M., Cromeans,T. and Jansen,R.W. TITLE Antigenic and genetic variation in cytopathic Hepatitis A virus variants during persistent infection: Evidence for genetic recombination JOURNAL Unpublished (1990) STANDARD full staff_entry FEATURES Location/Qualifiers CDS 718..7398 /product="viral protein" /codon_start=718 mat_peptide 718..786 /product="viral protein" /label=vp4 /codon_start=718 mat_peptide 787..1452 /product="viral protein" /label=vp2 /codon_start=787 mat_peptide 1453..2190 /product="viral protein" /label=vp3 /codon_start=1453 mat_peptide 2191..3090 /product="viral protein" /label=vp1 /codon_start=2191 mat_peptide 3091..3657 /product="viral protein" /label=2A /codon_start=3091 mat_peptide 3658..3978 /product="viral protein" /label=2B /codon_start=3658 mat_peptide 3979..4983 /product="viral protein" /label=2C /codon_start=3979 mat_peptide 4984..5202 /product="viral protein" /label=3A /codon_start=4984 mat_peptide 5203..5271 /product="viral protein" /label=3B /codon_start=5203 mat_peptide 5272..5928 /product="viral protein" /label=3C /codon_start=5272 mat_peptide 5929..7395 /product="viral protein" /label=3D /codon_start=5929 BASE COUNT 2162 a 1204 c 1626 g 2427 t ORIGIN 1 gtccctcttg gaagtccatg gtgaggggac ttgatacctc accgccgttt gcctaggcta 61 taggctaaat tttccctttc ccttttccct ttcctattcc ctttgttttg cttgtaaata 121 ttgatttgta aatattgatt cctgcaggtt cagggttctt aaatctgttt ctctataaga 181 acactcattt cacgctttct gtcttctttc ttccagggct ctccccttgc cctaggctct 241 ggccgttgcg cccggcgggg tcaactccat gattagcatg gagctgtagg agtctaaatt 301 ggggacacag atgtttggaa cgtcaccttg cagtgttaac ttggctttca tgaatctctt 361 tgatcttcca caaggggtag gctacgggtg aaacctctta ggctaatact tctatgaaga 421 gatgccttgg atagggtaac agcggcggat attggtgagt tgttaagaca aaaaccattc 481 aacgccggag gactgactct catccagtgg atgcattgag tggattgact gtcggggctg 541 tctttaggct taattccaga cctctctgtg cttggggcaa acatcatttg gccttaaatg 601 ggattctgtg agaggggatc cctccattgc cagctggact gttctttggg gccttatgtg 661 gtgtttgccg ctgaggtact caggggcatt taggtttttc ctcattctta aataataatg 721 aacatgtcta gacaaggtat tttccagact gttgggagtg gtcttgacca catcctgtct 781 ttggcagaca ttgaggaaga gcaaatgatt caatcagttg ataggactgc agtgactggt 841 gcttcttatt ttacttctgt ggatcaatct tcagttcata cagctgaggt tggatcacac 901 caggttgaac ctttgagaac ctctgttgat aaacccggtt caaagaggac tcagggagag 961 aaatttttct tgattcattc tgcagattgg cttactacac atgctctttt ccatgaagtt 1021 gcaaaattgg atgtggtgaa attattatac aatgagcagt ttgctgttca agggttgttg 1081 agataccata catatgcaag atttggcatt gaaattcaag ttcagataaa ccctacacct 1141 ttccaacagg ggggattgat ctgtgctatg gttcctggtg accagagcta tggttctata 1201 gcatcattga ctgtttatcc tcatggtttg ttaaattgca atattaacaa tgtggttaga 1261 ataaaggttc catttattta cacaagaggt gcttaccact ttaaagatcc acaataccca 1321 gtttgggaat tgacaattag agtttggtca gaattaaata ttgggacagg aacttcagct 1381 tatacttcac tcaatgtttt agctagattt acagatttgg agttgcatgg attaactcct 1441 ctttctacac aaatgatgag aaatgaattt agggtcagta ctactgagaa tgtggtgaat 1501 ctgtcaaatt atgaagatgc aagagcaaag atgtcttttg ctttggatca ggaagattgg 1561 aaatctgatc cgtcccaggg tggtgggatc aaaattactc attttactac ttggacatct 1621 attccaactt tggctgctca gtttccattt aatgcttcag cctcagttgg tcaacaaatt 1681 aaagttattc cagttgaccc atattttttc caaatgacaa atacgaatcc tgaccaaaaa 1741 tgtataactg ctttggcttc tatttgtcag atgttttgtt tttggagagg agatcttgtc 1801 tttgattttc aagtttttcc caccaaatat cattcaggta gattactgtt ttgttttgtt 1861 cctggcaatg agctaataga tgtttctgga atcacattaa agcaagcaac tactgctcct 1921 tgtgcagtaa tggatattac aggagtgcag tcaactttga gatttcgtgt tccctggatt 1981 tctgacactc cttacagagt gaacaggtat acaaagtcag cacatcagaa aggtgagtac 2041 actgccattg ggaagcttat tgtgtattgt tataacagat tgacctctcc ttctaacgtt 2101 gcttcccatg tcagagtgaa tgtttatctt tcagcaatta acttggaatg ttttgctcct 2161 ctttatcatg ctatggatgt tactacacaa gttggagatg attctggagg tttttcaaca 2221 acagtttcta cagaacagaa tgttccagat ccccaagttg gtataacaac catgaaagat 2281 ttgaaaggaa aagctaacag agggaaaatg gatgtttcag gagtacaagc acctgtggga 2341 gctatcacaa caattgagga tccagtttta gcaaagaaag tacctgagac atttcctgaa 2401 ttgaaacctg gagaatccag acatacatca gatcatatgt ccatctacaa gtttatggga 2461 aggtctcatt tcttgtgcac ttttacattc aattcaaata ataaagagta cacatttcct 2521 ataaccttgt cttcaacctc taatcctcct catggtttgc catcaacact gaggtggttt 2581 ttcaacttgt ttcagttgta tagagggcct ttagatctga caattattat tacaggagca 2641 actgatgtag atggcatggc ctggttcact ccagtaggtc ttgccgttga tactccttgg 2701 gtagagaagg agtcagcttt gtctattgac tacaaaactg ctcttggagc tgtcagattt 2761 aacacaagga gaacagggag cattcagatt agattaccat ggtattctta tttatatgct 2821 gtgtctggag cactggatgg tttgggtgac aagacagatt ctacatttgg attggtttct 2881 attcagattg caaattacaa tcattctgat gaatacttgt cttttagttg ttatttgtct 2941 gtcacagaac aatcagagtt ttattttccc agagctccat tgaactcaaa tgccatgtta 3001 tccactgaat caatggtgag cagaattgca gctggagact tggagtcatc agtggatgat 3061 cctagatcag aggaagataa aagatttgag agtcatatag aatgcaggaa gccatataaa 3121 gaactgagat tagaagttgg gaaacaaaga ctcaagtatg ctcaggaaga attgtcaaat 3181 gaagtacttc caccccctag gaaaatgaag ggactgtttt cacaagccaa catttctctt 3241 ttttatactg aggagcatga aatgatgaag ttttcctgga gaggtgtgac tgctgatact 3301 agagctttaa ggaggtttgg attctctttg gccgcaggca gaagtgtgtg gactcttgaa 3361 atggatgctg gggttcttac tgggagactg attagattga atgatgagaa atggacagaa 3421 atgaaggatg acaagattgt ttcattgatt gaaaagttta caagtaacaa atattggtcc 3481 aaagtgaatt tcccacatgg gatgttggat cttgaagaaa ttgctgccaa ttctaaggat 3541 tttcctaaca tgtctgaaac ggatttgtgt ttcttgctgc attggttaaa tccaaagaaa 3601 attaatttag cagatagaat gcttggattg tctggagttc aggaaattaa agaacaaggt 3661 gttggattaa tagcagagtg tagaactttc ttacattcta ttgctggaac tttaaaatct 3721 atgatgtttg gatttcatca ttctgtgact gttgaaatta taaacactgt gctctgtttt 3781 gttaagagtg gaattttgct ttatgtaata caacaattga atcaggatga acattctcac 3841 ataattggtc tgttgagagt catgaattat gtagatattg gttgttcagt tatttcatgt 3901 ggcaaagttt tttccaaaat gctggaaaca gtctttaatt ggcaaatgga ctccagaatg 3961 atggagttaa ggactcagag tttttccaac tggttaagag atatttgttc tgggatcacc 4021 atttttaaaa acttcaagga tggaatttgt tggctttata caaaattaaa ggacttttat 4081 gaagtgaatt atggcaagaa gaaggacatt ttaaatattc ttaaagataa ccaacaaaaa 4141 atagagaaag ccattgagga agccgataaa ttttgcattt tgcaaatcca agatgtggaa 4201 aaatctgaac agtatcagaa aggggttgac ttgatacaaa aattgagaac tgtttattca 4261 atggctcagg ttgatccaaa tttaatggtt catttgtcac ctttgagaga ttgtatagca 4321 agagttcatc agaaacttaa aaaccttgga tttataaatc aggcaatggt aacgagatgt 4381 gagccagttg tttgttattt acatggcaaa agagggggag gaaagagctt aacatcaatt 4441 gcattggcaa ccaaaatttg taaacattat ggtgttgagc ctgaaaagaa tatctatact 4501 aaacctgtgg cttcagatta ctgggatgga tatagtggac aattagtttg catcattgat 4561 gatattggcc aaaacacaac agatgaggac tggtcagatt tttgtcagtt agtgtcagga 4621 tgtccaatga gattaaacat ggcctctctt gaggagaagg gtaggcattt ttcttctcct 4681 tttataatag caacttcaaa ttggtcaaat ccaagtccaa aaacagttta tgttaaggaa 4741 gcaattgacc gcagactcca tttcaaggtt gaagttaaac ctgcttcatt tttcaaaaat 4801 cctcacaatg atatgttgaa tgttaattta gctaaaacaa atgatgcaat caaagatatg 4861 tcttgtgttg atttgataat ggatggacat aatgtttcat tgatggattt gctcagttct 4921 ttagtcatga cagttgatat tagaaaacaa aacatgactg aattcatgga gttgtggtct 4981 cagggaattt cagatgataa tgatagtgca gtagctgagt ttttccagtc ttttccatct 5041 ggtgaaccat cgaactctaa attatctggc tttttccaat ctgttactaa tcacaagtgg 5101 gttgctgtgg gagctgcagt tggcattctt ggagtgctcg ttggaggatg ggttgtgtat 5161 aagcatttct cccacaaaga ggaagaacca atcccagctg aaggggtata tcatggtgta 5221 actaagccca agcatgtgat taaattagat gcagatccag tagaatctca gtcaactttg 5281 gaagtagcag gactggttag gaagaacttg gttcagtttg gagttggaga gaagaatgga 5341 tgtgtgagat gggttatgaa tgccttggga gtgaaagatg attggctgct tgtgccttcc 5401 catgcttata aatttgagaa agattatgaa atgatggagt tttattttaa tagaggtgga 5461 acttactatt caatttcagc tggtaatgtt gttattcaat ctttggatgt gggattccag 5521 gatgttgttc tgatgaaggt tcctacaatt cctaagttta gagatattac tcagcatttt 5581 attaagaaag gggatgtgcc tagagctttg aatcgcctgg caacattagt gacaactgta 5641 aatggaaccc ctatgttaat ttctgagggc ccactaaaga tggaagagaa agctacttat 5701 gttcataaga aaaatgatgg tacaacagtt gatttagctg tggatcaggc atggagagga 5761 aaaggcgaag gtcttcctgg aatgtgtggt ggggccttgg tttcatcgaa tcaatctata 5821 cagaatgcaa tcttgggcat ccatgttgct ggaggaaatt caattcttgt tgcaaaattg 5881 gttactcaag aaatgttcca aaatattgat aagaaaattg aaagtcagag aattatgaaa 5941 gtggagttta ctcagtgttc aatgaatgtg gtctccaaaa cgctttttag aaagagtccc 6001 atttatcatc acattgataa aaccatgatt aattttcctg cagctatgcc cttttctaaa 6061 gctgaaattg atccaatggc tgtgatgtta tctaagtatt cattacctat tgtagaagaa 6121 ccagagggtt ataaagaggc ttcaattttt tatcaaaata aaatagtggg taagactcag 6181 ttagttgatg attttctaga tcttgatatg gccattacag gggccccagg aattgatgct 6241 atcaacatgg attcatctcc tggatttcct tatgtccagg agaagttgac caaaagagat 6301 ttaatttggt tggatgaaaa tggtttattg ctgggagttc atccaagatt ggctcagaga 6361 atcttattca atactgtcat gatggaaaat tgttctgatt tggatgttgt ttttacaacc 6421 tgtccaaaag atgaattgag accattagag aaagtgttgg aatcaaaaac aagagctatt 6481 gatgcttgtc ctctggatta cacaattttg tgccgaatgt attggggtcc agctattagt 6541 tattttcatt tgaatccagg tttccataca ggtgttgcta ttggcataga tcctgataaa 6601 cagtgggatg aactatttaa aacaatgata agattcggag atgttggtct tgatttagat 6661 ttctctgctt ttgatgctag tcttagtcca tttatgatta gagaagcagg tagaatcatg 6721 agtgaactat ctggaactcc atcccatttt ggcacagctc tcatcaatac tatcatttat 6781 tccaagcatt tgctgtataa ctgttgctac catgtctgtg gttcaatgcc ctctgggtct 6841 ccttgtacag ctttgctaaa ttcaattatt aataatgtca atttgtatta tgtgttttcc 6901 aagatatttg gaaagtctcc agttttcttt tgtcaggctt tgaagattct ctgttatgga 6961 gatgatgttt taatagtttt ctctcgagat gttcagattg ataatcttga tttgattgga 7021 caaaaaattg tagatgagtt taagaaactt ggcatgacag ctacttctgc tgacaagaat 7081 gtacctcagc tgaaaccagt ttcggaattg acttttctca aaagatcttt caatttggta 7141 gaggatagaa ttagacctgc aatttcggaa aaaacaattt ggtctttaat agcatggcag 7201 agaagcaacg ctgagtttga gcagaattta gagaatgctc agtggtttgc ctttatgcat 7261 ggctatgagt tttatcagaa attctattat tttgttcagt cctgtttgga gaaagagatg 7321 atagaataca gacttaaatc ttatgattgg tggagaatga gattttatga ccagtgtttc 7381 atttgtgacc tttcatgatt tgtttaaatg aactttctt //
GenBank-Updates@genbank.bio.net (03/29/91)
LOCUS HPA24A 7436 bp ss-RNA VRL 29-MAR-1991 DEFINITION Hepatitis A virus polyprotein RNA, complete cds. ACCESSION M59810 KEYWORDS hepatitis A; polyprotein. SOURCE Hepatitis A virus (strain HM175, isolate 24a), cDNA to genomic RNA. ORGANISM Hepatitis A virus Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Picornaviridae; Enterovirus. REFERENCE 1 (bases 1 to 7436) AUTHORS Lemon,S.M., Murphy,P.C., Shields,P.A., Ping,L.-H., Feinstone,S.M., Cromeans,T. and Jansen,R.W. TITLE Antigenic and genetic variation in cytopathic Hepatitis A virus variants during persistent infection: Evidence for genetic recombination JOURNAL Unpublished (1990) STANDARD full staff_entry FEATURES Location/Qualifiers CDS 719..7399 /product="viral protein" /codon_start=719 mat_peptide 719..787 /product="viral protein" /label=vp4 /codon_start=719 mat_peptide 788..1453 /product="viral protein" /label=vp2 /codon_start=788 mat_peptide 1454..2191 /product="viral protein" /label=vp3 /codon_start=1454 mat_peptide 2192..3091 /product="viral protein" /label=vp1 /codon_start=2192 mat_peptide 3092..3658 /product="viral protein" /label=2A /codon_start=3092 mat_peptide 3659..3979 /product="viral protein" /label=2B /codon_start=3659 mat_peptide 3980..4984 /product="viral protein" /label=2C /codon_start=3980 mat_peptide 4985..5203 /product="viral protein" /label=3A /codon_start=4985 mat_peptide 5204..5272 /product="viral protein" /label=3B /codon_start=5204 mat_peptide 5273..5929 /product="viral protein" /label=3C /codon_start=5273 mat_peptide 5930..7396 /product="viral protein" /label=3D /codon_start=5930 BASE COUNT 2167 a 1202 c 1632 g 2435 t ORIGIN 1 gtccctcttg gaagtccatg gtgaggggac ttgatacctc accgccgttt gcctaggcta 61 taggctaaat tttccctttc ccttttctcc tttcctattc cctttgtttt gcttgtaaat 121 attgatttgt aaatattgat tcctgcaggt tcagggttct taaatctgtt tctctataag 181 aacactcatt tcacgctttc tgtcttcttt cttccagggc tctccccttg ccctaggctc 241 tggccgttgc gcccggcggg gtcaactcca tgattagcat ggagctgtag gagtctaaat 301 tggggacaca gatgtttgga acgtcacctt gcagtgttaa cttggctttc atgaatctct 361 ttgatcttcc acaaggggta ggctacgggt gaaacctctt aggctaatac ttctatgaag 421 agatgccttg gatagggtaa cagcggcgga tattggtgag ttgttaagac aaaaaccatt 481 caacgccgga ggactgactc tcatccagtg gatgcattga gtggattgac tgtcggggct 541 gtctttaggc ttaattccag acctctctgt gcttggggca aacatcattt ggccttaaat 601 gggattctgt gagaggggat ccctccattg ccagctggac tgttctttgg ggccttatgt 661 ggtgtttgcc gctgaggtac tcaggggcat ttaggttttt cctcattctt aaataataat 721 gaacatgtct agacaaggta ttttccagac tgttgggagt ggtcttgacc acatcctgtc 781 tttggcagac attgaggaag agcaaatgat tcaatcagtt gataggactg cagtgactgg 841 tgcttcttat tttacttctg tggatcaatc ttcagttcat acagctgagg ttggatcaca 901 ccaggttgaa cctttgagaa cctctgttga taaacccggt tcaaagagga ctcagggaga 961 gaaatttttc ctgattcatt ctgcagattg gcttactaca catgctcttt tccatgaagt 1021 tgcaaaattg gatgtggtga aattattgta caatgagcag tttgctgttc aagggttgtt 1081 gagataccat acatatgcaa gatttggcat tgaaattcaa gttcagataa accctacacc 1141 tttccaacag gggggattga tctgtgctat ggttcctggt gaccagagct atggttctat 1201 agcatcattg actgtttatc ctcatggttt gttaaattgc aatattaaca atgtggttag 1261 aataaaggtt ccatttattt acacaagagg tgcttaccac tttaaagatc cacaataccc 1321 agtttgggaa ttgacaatta gagtttggtc agaattaaat attgggacag gaacttcagc 1381 ttatacttca ctcaatgttt tagctagatt tacagatttg gagttgcatg gattaactcc 1441 tctttctaca caaatgatga gaaatgaatt tagggtcagt actactgaga atgtggtgaa 1501 tctgtcaaat tatgaagatg caagagcaaa gatgtctttt gctttggatc aggaagattg 1561 gaaatctgat ccgtcccagg gtggtgggat caaaattact cattttacta cttggacatc 1621 tattccaact ttggctgctc agtttccatt taatgcttca gcctcagttg gtcaacaaat 1681 taaagttatt ccagttgacc catatttttt ccaaatgaca aatacgaatc ctgaccaaaa 1741 atgtataact gctttggctt ctatttgtca gatgttttgt ttttggagag gagatcttgt 1801 ctttgatttt caagtttttc ccaccaaata tcattcaggt agattactgt tttgttttgt 1861 tcctggcaat gagctaatag atgtttctgg aatcacatta aagcaagcaa ctactgctcc 1921 ttgtgcagta atggatatta caggagtgca gtcaactttg agatttcgtg ttccctggat 1981 ttctgacact ccttacagag tgaacaggta tacaaagtcg gcacatcaga aaggtgagta 2041 cactgccatt gggaagctta ttgtgtattg ttataacaga ttgacctctc cttctaacgt 2101 tgcttcccat gtcagagtga atgtttatct ttcagcaatt aacttggaat gttttgctcc 2161 tctttatcat gctatggatg ttactacaca agttggagat gattctggag gtttttcaac 2221 aacagtttct acagaacaga atgttccaga tccccaagtt ggtataacaa ccatgaaaga 2281 tttgaaagga aaagctaaca gagggaaaat ggatgtttca ggagtacaag cacctgtggg 2341 agctatcaca acaattgagg atccagtttt agcaaagaaa gtacctgaga catttcctga 2401 attgaaacct ggagaatcca gacatacatc agatcatatg tccatctaca agtttatggg 2461 aaggtctcat ttcttgtgca cttttacatt caattcaaat aataaagagt acacatttcc 2521 tataaccttg tcttcaacct ctaatcctcc tcatggtttg ccatcaacac tgaggtggtt 2581 tttcaacttg tttcagttgt atagagggcc tttagatctg acaattattg ttacaggagc 2641 aactgatgta gatggcatgg cctggttcac tccagtaggt cttgccgttg atactccttg 2701 ggtagagaag gagtcagctt tgtctattga ctacaaaact gctcttggag ctgtcagatt 2761 taatacaagg agaacaggga gcattcagat tagattacca tggtattctt atttatatgc 2821 tgtgtctgga gcactggatg gtttgggaga caagacagat tctacatttg gattggtttc 2881 tattcagatt gcaaattaca atcattctga tgagtacttg tcttttagtt gttatttgtc 2941 tgtcacagaa caatcagagt tttattttcc cagagctcca ttgaactcaa atgccatgtt 3001 atccactgaa tcaatggtga gcagaattgc agctggagac ttggagtcat cagtggatga 3061 tcctagatca gaggaagata aaagatttga gagtcatata gaatgcagga agccatataa 3121 agaactgaga ttagaagttg ggaaacaaag actcaagtat gctcaggaag aattgtcaaa 3181 tgaagtactt ccacccccta ggaaaatgaa gggactgttt tcacaagcca atatttctct 3241 tttttatact gaggagcatg aaatgatgaa gttttcctgg agaggtgtga ctgctgatac 3301 tagagcttta aggaggtttg gattctcttt ggccgcaggc agaagtgtgt ggactcttga 3361 aatggatgct ggggttctta ctgggagact gattagattg aatgatgaga aatggacaga 3421 aatgaaggat gacaagattg tttcattgat tgaaaagttt acaagtaaca aatattggtc 3481 caaagtgaat ttcccacatg ggatgttgga tcttgaagaa attgctgcca attctaagga 3541 gtttcctaac atgtctgaaa cggatttgtg tttcttgctg cattggttaa atccaaagaa 3601 aattaattta gcagatagaa tgcttggatt gtctggagtt caggaaatta aagaacaagg 3661 tgttggatta atagcagagt gtagaacttt cttacattct attgctggaa ctttaaaatc 3721 tatgatgttt ggatttcatc attctgtgac tgttgaaatt ataaacactg tgctctgttt 3781 tgttaagagt ggaattttgc tttatgtaat acaacaattg aatcaggatg aacattctca 3841 cataattggt ctgttgagag tcatgaatta tgtagatatt ggttgttcag ttatttcatg 3901 tggcaaagtt ttttccaaaa tgctggaaac agtctttaat tggcaaatgg actccagaat 3961 gatggagtta aggactcaga gtttttccaa ctggttaaga gatatttgtt ctgggatcac 4021 catttttaaa aacttcaagg atggaatttg ttggctttat acaaaattaa aggactttta 4081 tgaagtgaat tatggcaaga agaaggacat tttaaatatt cttaaagata accaacaaaa 4141 aatagagaaa gccattgagg aagccgataa attttgcatt ttgcaaatcc aagatgtgga 4201 aaaatctgaa cagtatcaga aaggggttga cttgatacaa aaattgagaa ctgtttattc 4261 aatggctcag gttgatccaa atttaatggt tcatttgtca cctttgagag attgtatagc 4321 aagagttcat cagaaactta aaaaccttgg atttataaat caggcaatgg taacgagatg 4381 tgagccagtt gtttgttatt tacatggcaa aagaggggga ggaaagagct taacatcaat 4441 tgcattggca accaaaattt gtaaacatta tggtgttgag cctgaaaaga atatctatac 4501 taaacctgtg gcttcagatt actgggatgg atatagtgga caattagttt gcatcattga 4561 tgatattggc caaaacacaa cagatgagga ctggtcagat ttttgtcagt tagtgtcagg 4621 atgtccaatg agattaaaca tggcctctct tgaggagaag ggtaggcatt tttcttctcc 4681 ttttataata gcaacttcaa attggtcaaa tccaagtcca aaaacagttt atgttaagga 4741 agcaattgac cgcagactcc atttcaaggt tgaagttaaa cctgcttcat ttttcaaaaa 4801 tcctcacaat gatatgttga atgttaattt agctaaaaca aatgatgcaa tcaaagatat 4861 gtcttgtgtt gatttgataa tggatggaca taatgtttca ttgatggatt tgctcagttc 4921 tttagtcatg acagttgata ttagaaaaca aaacatgact gaattcatgg agttgtggtc 4981 tcagggaatt tcagatgata atgatagtgc agtagctgag tttttccagt cttttccatc 5041 tggtgaacca tcgaactcta aattatctgg ctttttccaa tctgttacta atcacaagtg 5101 ggttgctgtg ggagctgcag ttggcattct tggagtgctc gttggaggat gggttgtgta 5161 taagcatttc tcccacaaag aggaagaacc aatcccagct gaaggggtat atcatggtgt 5221 aactaagccc aagcatgtga ttaaattaga tgcagatcca gtagaatctc agtcaacttt 5281 ggaaatagca ggactggtta ggaagaactt ggttcagttt ggagttggag agaagaatgg 5341 atgtgtgaga tgggttatga atgccttggg agtgaaagat gattggctgc ttgtgccttc 5401 ccatgcttat aaatttgaga aagattatga aatgatggag ttttatttta atagaggtgg 5461 aacttactat tcaatttcag ctggtaatgt tgttattcaa tctttggatg tgggattcca 5521 ggatgttgtt ctgatgaagg ttcctacaat tcctaagttt agagatatta ctgagcattt 5581 tattaagaaa ggggatgtgc ctagagcttt gaatcgcctg gcaacattag tgacaactgt 5641 aaatggaacc cctatgttaa tttctgaggg cccactaaag atggaagaga aagctactta 5701 tgttcataag aaaaatgatg gtacaacagt tgatttaact gtggatcagg catggagagg 5761 aaaaggcgaa ggtcttcctg gaatgtgtgg tggggccttg gtttcatcga atcaatctat 5821 acagaatgca atcttgggca tccatgttgc tggaggaaat tcaattcttg ttgcaaaatt 5881 ggttactcaa gaaatgttcc aaaatattga taagaaaatt gaaagtcaga gaattatgaa 5941 agtggagttt actcagtgtt caatgaatgt ggtctccaaa acgcttttta gaaagagtcc 6001 catttatcat cacattgata aaaccatgat taattttcct gcagctatgc ccttctctaa 6061 agctgaaatt gatccaatgg ctgtgatgtt atctaagtat tcattaccta ttgtagaaga 6121 accagagggt tataaagagg cttcaatttt ttatcaaaat aaaatagtgg gtaagactca 6181 gttagttgat gattttctag atcttgatat ggccattaca ggggccccag gaattgatgc 6241 tatcaacatg gattcatctc ctggatttcc ttatgtccag gagaagttga ccaaaagaga 6301 tttaatttgg ttggatgaaa atggtttatt gctgggagtt catccaagat tggctcagag 6361 aatcttattc aatactgtca tgatggaaaa ttgttctgat ttggatgttg tttttacaac 6421 ctgtccaaaa gatgaattga gaccattaga gaaagtgttg gaatcaaaaa caagagctat 6481 tgatgcttgt cctctggatt acacaatttt gtgccgaatg tattggggtc cagctattag 6541 ttattttcat ttgaatccag gtttccatac aggtgttgct attggcatag atcctgataa 6601 acagtgggat gaactattta aaacaatgat aagattcgga gatgttggtc ttgatttaga 6661 tttctctgct tttgatgcta gtcttagtcc atttatgatt agagaagcag gtagaatcat 6721 gagtgaacta tctggaactc catcccattt tggcacagct cttatcaata ctatcattta 6781 ttccaagcat ttgttgtata actgttgcta ccatgtctgt ggttcaatgc cctctgggtc 6841 tccttgtaca gctttgctaa attcaattat taataatgtc aatttgtatt atgtgttttc 6901 caagatattt ggaaagtctc cagttttctt ttgtcaggct ttgaagattc tctgttatgg 6961 agatgatgtt ttaatagttt tctctcgaga tgttcagatt gataatcttg atttgattgg 7021 acaaaaaatt gtagatgagt ttaagaaact tggcatgaca gctacttctg ctgacaagaa 7081 tgtacctcag ctgaaaccag tttcggaatt gacttttctc aaaagatctt tcaatttggt 7141 agaggataga attagacctg caatttcgga aaaaacaatt tggtctttaa tagcatggca 7201 gagaagcaac gctgagtttg agcagaattt agaaaatgct cagtggtttg cctttatgca 7261 tggctatgag ttttatcaga aattctatta ttttgttcag tcctgtttgg agaaagagat 7321 gatagaatac agacttaaat cttatgattg gtggagaatg agattttatg accagtgttt 7381 catttgtgac ctttcatgat ttgtttaaat gaactttctt aaaatttctg aggttt //