GenBank-Updates@genbank.bio.net (03/01/91)
LOCUS IPNVP1JAS 2784 bp ds-RNA VRL 01-MAR-1991 DEFINITION Infectious pancreatic necrosis virus (Jasper serotype) VP1 gene, complete cds. ACCESSION M58756 KEYWORDS GTP-binding protein; RNA dependent RNA polymerase; VP1; viral protein 1. SOURCE Infectious pancreatic necrosis virus (Jasper serotype), cDNA to genomic RNA. ORGANISM Infectious pancreatic necrosis virus Viridae; ds-RNA nonenveloped viruses; Birnaviridae. REFERENCE 1 (bases 1 to 2784) AUTHORS Duncan,R., Mason,C.L., Nagy,E., Leong,J.-A. and Dobos,P. TITLE Sequence analysis of infectious pancreatic necrosis virus genome segment B and its encoded VPI protein: A putative RNA-dependent RNA polymerase lacking the Gly-Asp-Asp motif JOURNAL Virology (1990) In press STANDARD full staff_review FEATURES Location/Qualifiers CDS 101..2638 /standard_name="VP1" /note="putative RNA-dependent RNA polymerase" /product="viral protein 1" /codon_start=101 BASE COUNT 860 a 813 c 688 g 423 t ORIGIN Segment B. 1 ggaaacagtg ggtcaacgtt ggtggcaccc gacataccac gactgtttac gtatgcacgc 61 aagtgccctt taacaaaacc ctatacacac aactcatgat atgtcggaca tcttcaactc 121 accacaaaac aaggcatcca tcttgactgc tctgatgaag agcacaacag gagacgtaga 181 ggacgtgctg ataccaaaac gcttcaggcc agccaaggac cccctcgaca gcccgcaagc 241 agcagcacag ttcctgaagg acaacaagta ccggatactt aggccgcgag ccatcccgac 301 catggtcgaa ctagagacag atgccgctct gcctcgactg cgacaaatgg tggaagacgg 361 caagcttaag gacacggtaa gcgtcccaga aggaaccact gcgttctacc caaagtacta 421 cccattccac aagccagacc atgacgaagt ggggacgttc ggggctccgg acatcacact 481 tctgaagcaa ctcaccttct tcctgttgga gaatgacttc ccaacaggac cggagacgct 541 cagacaagtc cgagaagcca tagccacact tcagtacggc tcaggcagct actcaggaca 601 gctgaacagg ctcctagcaa tgaagggcgt cgccactggc aggaatccaa acaagactcc 661 aaaaacagtg ggctacacga acgaacagct agcaaaactg ctggagcaaa cactaccgat 721 caacacacca aagcatgagg accccgacct ccggtgggcc ccaagctggc tgatcaacta 781 caccggagac ctgagcacag acaagtcata tctgccacat gtgaccataa agtcctcagc 841 cggcctacca tacataggca aaaccaaagg agacacgacg gcagaagcgc tcgtactggc 901 tgactccttc atacgtgacc tcggaagagc cgccacatca gcagacccag aagcaggtgt 961 gaagaaaacc atcaccgact tctggtacct gagctgtggg ctgctcttcc caaagggcga 1021 aagatacaca caagtggact gggacaagaa gaccagaaac atttggagcg cgccctaccc 1081 aacacaccta ctactatcaa tggtgtcaac cccggtgatg aacgagtcca aactcaacat 1141 caccaacacc cagaccccgt ctctgtacgg gttctcacca ttccacggag gaatggacag 1201 aatcatgaca atcataagag acagcctgga caatgacgag gacctagtca tgatctatgc 1261 ggacaacatc tacatactgc aggacaacac atggtactca attgacctgg agaaaggcga 1321 ggccaactgc actccacagc acatgcaggc catgatgtac tacctcctga cgaggggatg 1381 gacgaacgag gacggctcac cgcgatacaa cccgacatgg gccacattcg caatgaacgt 1441 cgctccatcc atggtggtgg actcatcgtg tcttttgatg aaccttcaac tgaagaccta 1501 cggccagggc agtgggaatg cctttacatt cctgaacaac cacctcatgt ccacaatagt 1561 cgtggccgag tgggtaaaag cagggaaacc aaaccccatg accaaagagt tcatggacct 1621 cgaggagaaa acgggcatca acttcaagat agagcgcgag ctgaaaaacc ttagagagac 1681 catcgttgag gccgtcgaga cggcacccca ggatggatac ctcgccgatg ggtccgacct 1741 accccccatc agaccaggaa aagcagtaga gcttgacctg ctcgggtggt cggccatcta 1801 cagccgccaa atggagatgt tcgttccagt cctcgagaac gagagactaa ttgcctcagc 1861 agcctaccca aaggggctcg agaacaaagc cctggccaga aaacccggag ccgagattgc 1921 gtaccagata gtgcggtacg aggcaatcag gctggtaggc ggctggaaca atccgctact 1981 agagaccgcg gccaaacaca tgtccctcga caagaggaag agactggaag tgaaggggat 2041 agacgtcacc ggattcctcg atgactggaa caacatgtcc gaattcggag gagacctaga 2101 aggaataacg ctatcagaac ccctaacaaa ccaaacactt gttgacatca acacgccgct 2161 ggacagcttt gaccccaagg caagacccca aacacccagg tctccaaaga agactctaga 2221 cgaggtgact acggccatca cctcgggcac atacaaggac cccaaaagcg ctgtgtggcg 2281 actgctagac cagaggacca aactccgagt cagcacacta cgagatcaag cactagcgct 2341 aaaacccgcg tcgtcctcgg tggacaactg ggccgaagcc actgaggaac tggcacaaca 2401 gcaacagcta ctcatgaagg ccaacaatct gctgaagagc agcctgacgg agacaagaga 2461 agcactggag accatccagt cagacaaaat catcgcaggg aaatccaacc ccgagaagaa 2521 cccggggacc gcagccaacc cagtcgttgg ctacggggaa ttcagtgaga agattcctct 2581 gacccccacg cagaaaaaga atgccaagcg gagggaaaag cagagaagaa accagtaaga 2641 agacccaaac cgggaagaat ccgaaatgaa tcagctggac tcatatgaaa gctccgcgcc 2701 gcacggcaag ctggacaaaa gtagtgaccc gacaacgtgc caccaacatg acccctgaaa 2761 acatccggtt ccgccaggga cccc //
GenBank-Updates@genbank.bio.net (03/01/91)
LOCUS IPNVP1SP 2630 bp ds-RNA VRL 01-MAR-1991 DEFINITION Infectious pancreatic necrosis virus (Sp serotype) VP1 gene, complete cds. ACCESSION M58757 KEYWORDS GTP-binding protein; RNA dependent RNA polymerase; VP1; viral protein 1. SOURCE Infectious pancreatic necrosis virus (Sp serotype), cDNA to genomic RNA. ORGANISM Infectious pancreatic necrosis virus Viridae; ds-RNA nonenveloped viruses; Birnaviridae. REFERENCE 1 (bases 1 to 2630) AUTHORS Duncan,R., Mason,C.L., Nagy,E., Leong,J.-A. and Dobos,P. TITLE Sequence analysis of infectious pancreatic necrosis virus genome segment B and its encoded VPI protein: A putative RNA-dependent RNA polymerase lacking the Gly-Asp-Asp motif JOURNAL Virology (1990) In press STANDARD full staff_review FEATURES Location/Qualifiers CDS 94..2628 /standard_name="VP1" /note="putative RNA-dependent RNA polymerase" /product="viral protein 1" /codon_start=94 BASE COUNT 786 a 764 c 639 g 441 t ORIGIN Segment B. 1 gtgggtcaac gttggtggca cccgacatac cacgactgtt tatgtatgca cgcgagtgcc 61 cttttaaaac ctctacaata tacaacttat gatatgtcgg acatcttcaa ctcacctcaa 121 aacaaggctt ctatcttgaa tgcactcatg aagagcacgc agggagacgt ggaggatgtt 181 ctaataccca agcggtttag acccgcaaag gatccgttag atagccccca ggctgcagcc 241 gcgttcctga aagaacacaa gtatcggata cttaggccgc gagccatacc caccatggtt 301 gaaatagaga cggatgccgc tctgcctcga ctagcggcca tggtggacga tggcaagctt 361 aaggaaatgg tcaatgttcc cgaaggaaca accgcgttct acccaaaata ctacccattc 421 cacagacccg accatgacga cgtgggaacg tttggggctc cagacatcac actactcaaa 481 caactgacgt tcttcctgct ggagaatgac tttccaactg gtccagagac cctaagacaa 541 gtcagagaag caatcgcaac cctgcaatac gggtccggca gctactcagg acaactcaac 601 aggctactgg caatgaaggg cgtcgccacg gggaggaatc ccaacaagac tccactggcc 661 gttggctaca ccaacgagca gatggcaaga ctgatggagc aaaccttgcc tatcaaccct 721 ccaaagaatg aggacccaga cctccgatgg gccccaagct ggttgataca gtacaccgga 781 gacgcatcaa ctgacaagtc atatctccct catgtgacag ctaagtcatc tgccggccta 841 ccctacatag gcaaaaccaa aggagacacc acggccgaag ccctggtgct ggcagactcc 901 ttcataaggg acctcggaaa agccgcaaca tcagccgacc caggggcggc agctaagaaa 961 gtactgtccg acttctggta cctcagctgc ggtctgctct tcccaaaagg ggagagatac 1021 acacagaaag actgggactt gaagaccagg aacatctgga gtgcccccta tccaacgcac 1081 ctactactat caatggtgtc gtcaccggtg atggatgagt ccaaactcaa catcaccaac 1141 actcagaccc cttctctgta cgggttctca ccatttcacg gtgggatcaa cagaatcatg 1201 accatcatca gagagcatct ggatcaagag caggacctag tcatgatata tgccgacaac 1261 atatacatac tacaggacaa cacctggtac tccatcgatc tagaaaaggg agaagcaaac 1321 tgcacaccac aacacatgca ggcaatgatg tactaccgtc tcacacgcga atggacaaac 1381 gaggacggct caccacggta caacccgacg tgggcaacat tcgccatgta cgttgggccc 1441 tcaatggtag tggactcaac ctgcctgctg atgaatctgc agctgaagac tacgggccaa 1501 ggcagtggga atgccttcac cttcctcaac aaccatctca tgtccacaat tgtggtcgcg 1561 gagtggcaca aggcaggaag gccaaatccc atgtccaaag aattcatgga cctcgaagca 1621 aagacgggga tcaacttcaa aatcgagcgc gagctgaaag acctaaggtc gatcatcatg 1681 gaggcggtag acaccgcccc actcgacggc tatctagccg acgggtccga cctgccaccc 1741 agggtgccag ggaaggcggt ggagctcgac cttctaggat ggtccgcagt gtacagccga 1801 caactcgaga tgttcgtccc cgtccttgaa aacgaaagac taattgcatc agtcgcctac 1861 ccaaaagggc tagagaacaa atccctagct cgaaaacccg gggccgagat cgcataccaa 1921 atagtaaggt atgaagcgat tcggctcatc ggaggctgga acaatccact catcgaaaca 1981 gcagcaaaac acatgtccct ggacaaaagg aagagactgg aggtaaaagg catcgacgtc 2041 accggattcc tagacgactg gaacaccatg tcggagttcg gaggcgatct ggagggtatc 2101 tcactaacag ctcccctcac aaaccagacc ctcctagaca tcaacacacc agagaccgag 2161 ttcgacgtca aagacagacc ccccacgccg cgctccccag gcaaaaccct cgccgaggta 2221 accgcagcga taacatcagg gacctacaaa gaccccaaaa gtgcagtgtg gaggctcctc 2281 gaccagagga ccaaactacg cgtgagcacc ctacgcgatc acgcgcacgc gctaaaaccc 2341 gcagcgtcaa catccgactt ctggggggac gccacagaag aactcgccga acaacaacaa 2401 ctgctgatga aagcgaacaa cctgctaaag agcagcctca cggaagcgag ggaagccctc 2461 gaaaccgtgc agtcagataa aataatctca ggcaaaacct ctccagagaa gaatcccggg 2521 accgccgcaa accccgtggt ggcgtatgga gagttcagcg agaaaattcc tctcactccc 2581 acgcaaaaga agaacgccaa gcgtcgggag aagcagagaa gaaactaaga //
GenBank-Updates@genbank.bio.net (03/30/91)
LOCUS IPNVP1JAS 2784 bp ds-RNA VRL 30-MAR-1991 DEFINITION Infectious pancreatic necrosis virus (Jasper serotype) VP1 gene, complete cds. ACCESSION M58756 KEYWORDS GTP-binding protein; RNA dependent RNA polymerase; VP1; viral protein 1. SOURCE Infectious pancreatic necrosis virus (Jasper serotype), cDNA to genomic RNA. ORGANISM Infectious pancreatic necrosis virus Viridae; ds-RNA nonenveloped viruses; Birnaviridae. REFERENCE 1 (bases 1 to 2784) AUTHORS Duncan,R., Mason,C.L., Nagy,E., Leong,J.-A. and Dobos,P. TITLE Sequence analysis of infectious pancreatic necrosis virus genome segment B and its encoded VP1 protein: A putative RNA-dependent RNA polymerase lacking the Gly-Asp-Asp motif JOURNAL Virology 181, 541-552 (1991) STANDARD simple staff_entry FEATURES Location/Qualifiers CDS 101..2638 /standard_name="VP1" /note="putative RNA-dependent RNA polymerase" /product="viral protein 1" /codon_start=101 BASE COUNT 860 a 813 c 688 g 423 t ORIGIN Segment B. 1 ggaaacagtg ggtcaacgtt ggtggcaccc gacataccac gactgtttac gtatgcacgc 61 aagtgccctt taacaaaacc ctatacacac aactcatgat atgtcggaca tcttcaactc 121 accacaaaac aaggcatcca tcttgactgc tctgatgaag agcacaacag gagacgtaga 181 ggacgtgctg ataccaaaac gcttcaggcc agccaaggac cccctcgaca gcccgcaagc 241 agcagcacag ttcctgaagg acaacaagta ccggatactt aggccgcgag ccatcccgac 301 catggtcgaa ctagagacag atgccgctct gcctcgactg cgacaaatgg tggaagacgg 361 caagcttaag gacacggtaa gcgtcccaga aggaaccact gcgttctacc caaagtacta 421 cccattccac aagccagacc atgacgaagt ggggacgttc ggggctccgg acatcacact 481 tctgaagcaa ctcaccttct tcctgttgga gaatgacttc ccaacaggac cggagacgct 541 cagacaagtc cgagaagcca tagccacact tcagtacggc tcaggcagct actcaggaca 601 gctgaacagg ctcctagcaa tgaagggcgt cgccactggc aggaatccaa acaagactcc 661 aaaaacagtg ggctacacga acgaacagct agcaaaactg ctggagcaaa cactaccgat 721 caacacacca aagcatgagg accccgacct ccggtgggcc ccaagctggc tgatcaacta 781 caccggagac ctgagcacag acaagtcata tctgccacat gtgaccataa agtcctcagc 841 cggcctacca tacataggca aaaccaaagg agacacgacg gcagaagcgc tcgtactggc 901 tgactccttc atacgtgacc tcggaagagc cgccacatca gcagacccag aagcaggtgt 961 gaagaaaacc atcaccgact tctggtacct gagctgtggg ctgctcttcc caaagggcga 1021 aagatacaca caagtggact gggacaagaa gaccagaaac atttggagcg cgccctaccc 1081 aacacaccta ctactatcaa tggtgtcaac cccggtgatg aacgagtcca aactcaacat 1141 caccaacacc cagaccccgt ctctgtacgg gttctcacca ttccacggag gaatggacag 1201 aatcatgaca atcataagag acagcctgga caatgacgag gacctagtca tgatctatgc 1261 ggacaacatc tacatactgc aggacaacac atggtactca attgacctgg agaaaggcga 1321 ggccaactgc actccacagc acatgcaggc catgatgtac tacctcctga cgaggggatg 1381 gacgaacgag gacggctcac cgcgatacaa cccgacatgg gccacattcg caatgaacgt 1441 cgctccatcc atggtggtgg actcatcgtg tcttttgatg aaccttcaac tgaagaccta 1501 cggccagggc agtgggaatg cctttacatt cctgaacaac cacctcatgt ccacaatagt 1561 cgtggccgag tgggtaaaag cagggaaacc aaaccccatg accaaagagt tcatggacct 1621 cgaggagaaa acgggcatca acttcaagat agagcgcgag ctgaaaaacc ttagagagac 1681 catcgttgag gccgtcgaga cggcacccca ggatggatac ctcgccgatg ggtccgacct 1741 accccccatc agaccaggaa aagcagtaga gcttgacctg ctcgggtggt cggccatcta 1801 cagccgccaa atggagatgt tcgttccagt cctcgagaac gagagactaa ttgcctcagc 1861 agcctaccca aaggggctcg agaacaaagc cctggccaga aaacccggag ccgagattgc 1921 gtaccagata gtgcggtacg aggcaatcag gctggtaggc ggctggaaca atccgctact 1981 agagaccgcg gccaaacaca tgtccctcga caagaggaag agactggaag tgaaggggat 2041 agacgtcacc ggattcctcg atgactggaa caacatgtcc gaattcggag gagacctaga 2101 aggaataacg ctatcagaac ccctaacaaa ccaaacactt gttgacatca acacgccgct 2161 ggacagcttt gaccccaagg caagacccca aacacccagg tctccaaaga agactctaga 2221 cgaggtgact acggccatca cctcgggcac atacaaggac cccaaaagcg ctgtgtggcg 2281 actgctagac cagaggacca aactccgagt cagcacacta cgagatcaag cactagcgct 2341 aaaacccgcg tcgtcctcgg tggacaactg ggccgaagcc actgaggaac tggcacaaca 2401 gcaacagcta ctcatgaagg ccaacaatct gctgaagagc agcctgacgg agacaagaga 2461 agcactggag accatccagt cagacaaaat catcgcaggg aaatccaacc ccgagaagaa 2521 cccggggacc gcagccaacc cagtcgttgg ctacggggaa ttcagtgaga agattcctct 2581 gacccccacg cagaaaaaga atgccaagcg gagggaaaag cagagaagaa accagtaaga 2641 agacccaaac cgggaagaat ccgaaatgaa tcagctggac tcatatgaaa gctccgcgcc 2701 gcacggcaag ctggacaaaa gtagtgaccc gacaacgtgc caccaacatg acccctgaaa 2761 acatccggtt ccgccaggga cccc //
GenBank-Updates@genbank.bio.net (03/30/91)
LOCUS IPNVP1SP 2630 bp ds-RNA VRL 30-MAR-1991 DEFINITION Infectious pancreatic necrosis virus (Sp serotype) VP1 gene, complete cds. ACCESSION M58757 KEYWORDS GTP-binding protein; RNA dependent RNA polymerase; VP1; viral protein 1. SOURCE Infectious pancreatic necrosis virus (Sp serotype), cDNA to genomic RNA. ORGANISM Infectious pancreatic necrosis virus Viridae; ds-RNA nonenveloped viruses; Birnaviridae. REFERENCE 1 (bases 1 to 2630) AUTHORS Duncan,R., Mason,C.L., Nagy,E., Leong,J.-A. and Dobos,P. TITLE Sequence analysis of infectious pancreatic necrosis virus genome segment B and its encoded VP1 protein: A putative RNA-dependent RNA polymerase lacking the Gly-Asp-Asp motif JOURNAL Virology 181, 541-552 (1991) STANDARD simple staff_entry FEATURES Location/Qualifiers CDS 94..2628 /standard_name="VP1" /note="putative RNA-dependent RNA polymerase" /product="viral protein 1" /codon_start=94 BASE COUNT 786 a 764 c 639 g 441 t ORIGIN Segment B. 1 gtgggtcaac gttggtggca cccgacatac cacgactgtt tatgtatgca cgcgagtgcc 61 cttttaaaac ctctacaata tacaacttat gatatgtcgg acatcttcaa ctcacctcaa 121 aacaaggctt ctatcttgaa tgcactcatg aagagcacgc agggagacgt ggaggatgtt 181 ctaataccca agcggtttag acccgcaaag gatccgttag atagccccca ggctgcagcc 241 gcgttcctga aagaacacaa gtatcggata cttaggccgc gagccatacc caccatggtt 301 gaaatagaga cggatgccgc tctgcctcga ctagcggcca tggtggacga tggcaagctt 361 aaggaaatgg tcaatgttcc cgaaggaaca accgcgttct acccaaaata ctacccattc 421 cacagacccg accatgacga cgtgggaacg tttggggctc cagacatcac actactcaaa 481 caactgacgt tcttcctgct ggagaatgac tttccaactg gtccagagac cctaagacaa 541 gtcagagaag caatcgcaac cctgcaatac gggtccggca gctactcagg acaactcaac 601 aggctactgg caatgaaggg cgtcgccacg gggaggaatc ccaacaagac tccactggcc 661 gttggctaca ccaacgagca gatggcaaga ctgatggagc aaaccttgcc tatcaaccct 721 ccaaagaatg aggacccaga cctccgatgg gccccaagct ggttgataca gtacaccgga 781 gacgcatcaa ctgacaagtc atatctccct catgtgacag ctaagtcatc tgccggccta 841 ccctacatag gcaaaaccaa aggagacacc acggccgaag ccctggtgct ggcagactcc 901 ttcataaggg acctcggaaa agccgcaaca tcagccgacc caggggcggc agctaagaaa 961 gtactgtccg acttctggta cctcagctgc ggtctgctct tcccaaaagg ggagagatac 1021 acacagaaag actgggactt gaagaccagg aacatctgga gtgcccccta tccaacgcac 1081 ctactactat caatggtgtc gtcaccggtg atggatgagt ccaaactcaa catcaccaac 1141 actcagaccc cttctctgta cgggttctca ccatttcacg gtgggatcaa cagaatcatg 1201 accatcatca gagagcatct ggatcaagag caggacctag tcatgatata tgccgacaac 1261 atatacatac tacaggacaa cacctggtac tccatcgatc tagaaaaggg agaagcaaac 1321 tgcacaccac aacacatgca ggcaatgatg tactaccgtc tcacacgcga atggacaaac 1381 gaggacggct caccacggta caacccgacg tgggcaacat tcgccatgta cgttgggccc 1441 tcaatggtag tggactcaac ctgcctgctg atgaatctgc agctgaagac tacgggccaa 1501 ggcagtggga atgccttcac cttcctcaac aaccatctca tgtccacaat tgtggtcgcg 1561 gagtggcaca aggcaggaag gccaaatccc atgtccaaag aattcatgga cctcgaagca 1621 aagacgggga tcaacttcaa aatcgagcgc gagctgaaag acctaaggtc gatcatcatg 1681 gaggcggtag acaccgcccc actcgacggc tatctagccg acgggtccga cctgccaccc 1741 agggtgccag ggaaggcggt ggagctcgac cttctaggat ggtccgcagt gtacagccga 1801 caactcgaga tgttcgtccc cgtccttgaa aacgaaagac taattgcatc agtcgcctac 1861 ccaaaagggc tagagaacaa atccctagct cgaaaacccg gggccgagat cgcataccaa 1921 atagtaaggt atgaagcgat tcggctcatc ggaggctgga acaatccact catcgaaaca 1981 gcagcaaaac acatgtccct ggacaaaagg aagagactgg aggtaaaagg catcgacgtc 2041 accggattcc tagacgactg gaacaccatg tcggagttcg gaggcgatct ggagggtatc 2101 tcactaacag ctcccctcac aaaccagacc ctcctagaca tcaacacacc agagaccgag 2161 ttcgacgtca aagacagacc ccccacgccg cgctccccag gcaaaaccct cgccgaggta 2221 accgcagcga taacatcagg gacctacaaa gaccccaaaa gtgcagtgtg gaggctcctc 2281 gaccagagga ccaaactacg cgtgagcacc ctacgcgatc acgcgcacgc gctaaaaccc 2341 gcagcgtcaa catccgactt ctggggggac gccacagaag aactcgccga acaacaacaa 2401 ctgctgatga aagcgaacaa cctgctaaag agcagcctca cggaagcgag ggaagccctc 2461 gaaaccgtgc agtcagataa aataatctca ggcaaaacct ctccagagaa gaatcccggg 2521 accgccgcaa accccgtggt ggcgtatgga gagttcagcg agaaaattcc tctcactccc 2581 acgcaaaaga agaacgccaa gcgtcgggag aagcagagaa gaaactaaga //