GenBank-Updates@genbank.bio.net (12/05/90)
LOCUS ECODINA5 1488 bp ds-DNA BCT 05-DEC-1990
DEFINITION E.coli DNA polymerase II (dinA) gene, complete cds, and
arabinose (araD) gene, 3' end.
ACCESSION M37727
KEYWORDS DNA polymerase II; L-ribulosephosphate-4-epimerase; arabinose.
SOURCE E.coli (strain K12) DNA.
ORGANISM Escherichia coli
Prokaryota; Bacteria; Gracilicutes; Scotobacteria;
Facultatively anaerobic rods; Enterobacteriaceae.
REFERENCE 1 (bases 1 to 1488)
AUTHORS Bonner,C.A., Hays,S., McEntee,K. and Goodman,M.F.
TITLE DNA polymerase II is encoded by the DNA damage-inducible dinA gene
of Escherichia coli
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 7663-7667 (1990)
STANDARD simple staff_entry
COMMENT Draft entry and computer-readable sequence for [1] kindly submitted
by C.A.Bonner, 13-AUG-1990.
FEATURES from to/span description
pept < 1 33 arabinose (araD) (EC 5.1.3.4) (AA at 1)
binding 36 52 LexA binding site
pept 108 1484 DNA polymerase II (dinA)
BASE COUNT 324 a 396 c 422 g 346 t
ORIGIN
1 aagcatggcg cgaaggcata ttacgggcag taatgactgt ataaaaccac agccaatcaa
61 acgaaaccag gctatactca agcctggttt tttgatggat tttcagcgtg gcgcaggcag
121 gttttatctt aacccgacac tggcgggaca ccccgcaagg gacagaagtc tccttctggc
181 tggcgacgga caacgggccg ttgcaggtta cgcttgcacc gcaagagtcc gtggcgttta
241 ttcccgccga tcaggttccc cgcgctcagc atattttgca gggtgaacaa ggctttcgcc
301 tgacaccgct ggcgttaaag gattttcacc gccagccggt gtatggcctt tactgtcgcg
361 cccatcgcca attgatgaat tacgaaaagc gcctgcgtga aggtggcgtt accgtctacg
421 aggccgatgt gcgtccgcca gaacgctatc tgatggagcg gtttatcacc tcaccggtgt
481 gggtcgaggg tgatatgcac aatggcacta tcgttaatgc ccgtctgaaa ccgcatcccg
541 actatcgtcc gccgctcaag tgggtttcta tagatattga aaccacccgc cacggtgagc
601 tgtactgcat cggcctggaa ggctgcgggc agcgcatcgt ttatatgctg gggccggaga
661 atggcgacgc ctcctcgctt gatttcgaac tggaatacgt cgccagccgc ccgcagttgc
721 tggaaaaact caacgcctgg tttgccaact acgatcctga tgtgatcatc ggttggaacg
781 tggtgcagtt cgatctgcga atgctgcaaa aacatgccga gcgttaccgt cttccgctgc
841 gtcttgggcg cgataatagc gagctggagt ggcgcgacga cggctttaaa aacggcgtct
901 tttttgccca ggctaaaggt gggctaatta tcgacggtat cgaggcgctg aaatccgcgt
961 tctggaattt ctcttcattc tcgctggaaa ctgtcgctca ggagctatta ggcgaaggaa
1021 aatctatcga taacccgtgg gatcgaatgg acgaaattga ccgccgtttc gccgaagata
1081 aacctgcgct ggcaacttat aacctgaaag attgcgagct ggtgacgcag atcttccaca
1141 aaactgaaat catgccattt ttactcgaac gggcaacggt gaacggcctg ccggtggacc
1201 gacacggcgg ttcggtggcg gcatttggtc atctctattt tccgcgaatg catcgcgctg
1261 gttatgtcgc gcctaatctc ggcgaagtgc cgccgcacgc cagccctggc ggctacgtga
1321 tggattcacg gccagggctt tatgattcag tgctggtgct ggactataaa agcctgtacc
1381 cgtcgatcat ccgcaccttt ctgattgatc ccgtcgggct ggtggaaggc atggcgcagc
1441 ctgatccaga gcacagtacc gaaggttttc tcgatgcctg gtgaagcg
//GenBank-Updates@genbank.bio.net (01/31/91)
LOCUS ECODINA5 1488 bp ds-DNA BCT 31-JAN-1991
DEFINITION E.coli DNA polymerase II (dinA) gene, complete cds.
ACCESSION M37727
KEYWORDS DNA polymerase II; L-ribulosephosphate-4-epimerase; araD gene;
arabinose; dinA gene.
SOURCE E.coli (strain K12) DNA.
ORGANISM Escherichia coli
Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively
anaerobic rods; Enterobacteriaceae.
REFERENCE 1 (bases 1 to 1488)
AUTHORS Bonner,C.A., Hays,S., McEntee,K. and Goodman,M.F.
TITLE DNA polymerase II is encoded by the DNA damage-inducible dinA gene
of Escherichia coli
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 7663-7667 (1990)
STANDARD simple staff_entry
COMMENT Draft entry and computer-readable sequence for [Proc. Natl. Acad.
Sci. U.S.A. (1990) In press] kindly submitted
by C.A.Bonner, 13-AUG-1990.
FEATURES Location/Qualifiers
CDS <1..33
/EC_number="5.1.3.4"
/product="L-ribulosephosphate-4-epimerase"
/gene="araD"
/codon_start=1
protein_bind 36..52
/bound_moiety="LexA binding site"
CDS 108..1484
/product="DNA polymerase II"
/gene="dinA"
/codon_start=108
BASE COUNT 324 a 396 c 422 g 346 t
ORIGIN
1 aagcatggcg cgaaggcata ttacgggcag taatgactgt ataaaaccac agccaatcaa
61 acgaaaccag gctatactca agcctggttt tttgatggat tttcagcgtg gcgcaggcag
121 gttttatctt aacccgacac tggcgggaca ccccgcaagg gacagaagtc tccttctggc
181 tggcgacgga caacgggccg ttgcaggtta cgcttgcacc gcaagagtcc gtggcgttta
241 ttcccgccga tcaggttccc cgcgctcagc atattttgca gggtgaacaa ggctttcgcc
301 tgacaccgct ggcgttaaag gattttcacc gccagccggt gtatggcctt tactgtcgcg
361 cccatcgcca attgatgaat tacgaaaagc gcctgcgtga aggtggcgtt accgtctacg
421 aggccgatgt gcgtccgcca gaacgctatc tgatggagcg gtttatcacc tcaccggtgt
481 gggtcgaggg tgatatgcac aatggcacta tcgttaatgc ccgtctgaaa ccgcatcccg
541 actatcgtcc gccgctcaag tgggtttcta tagatattga aaccacccgc cacggtgagc
601 tgtactgcat cggcctggaa ggctgcgggc agcgcatcgt ttatatgctg gggccggaga
661 atggcgacgc ctcctcgctt gatttcgaac tggaatacgt cgccagccgc ccgcagttgc
721 tggaaaaact caacgcctgg tttgccaact acgatcctga tgtgatcatc ggttggaacg
781 tggtgcagtt cgatctgcga atgctgcaaa aacatgccga gcgttaccgt cttccgctgc
841 gtcttgggcg cgataatagc gagctggagt ggcgcgacga cggctttaaa aacggcgtct
901 tttttgccca ggctaaaggt gggctaatta tcgacggtat cgaggcgctg aaatccgcgt
961 tctggaattt ctcttcattc tcgctggaaa ctgtcgctca ggagctatta ggcgaaggaa
1021 aatctatcga taacccgtgg gatcgaatgg acgaaattga ccgccgtttc gccgaagata
1081 aacctgcgct ggcaacttat aacctgaaag attgcgagct ggtgacgcag atcttccaca
1141 aaactgaaat catgccattt ttactcgaac gggcaacggt gaacggcctg ccggtggacc
1201 gacacggcgg ttcggtggcg gcatttggtc atctctattt tccgcgaatg catcgcgctg
1261 gttatgtcgc gcctaatctc ggcgaagtgc cgccgcacgc cagccctggc ggctacgtga
1321 tggattcacg gccagggctt tatgattcag tgctggtgct ggactataaa agcctgtacc
1381 cgtcgatcat ccgcaccttt ctgattgatc ccgtcgggct ggtggaaggc atggcgcagc
1441 ctgatccaga gcacagtacc gaaggttttc tcgatgcctg gtgaagcg
//GenBank-Updates@genbank.bio.net (04/04/91)
LOCUS ECOPOLB 3732 bp ds-DNA BCT 04-APR-1991
DEFINITION E.coli DNA polymerase II (polB) and L-ribulose-5-phosphate
4-epimerase (araD) genes, complete cds.
ACCESSION M62646
KEYWORDS DNA polymerase II; L-ribulose-5-phosphate 4-epimerase.
SOURCE E.coli DNA.
ORGANISM Escherichia coli
Prokaryota; Bacteria; Gracilicutes; Scotobacteria;
Facultatively anaerobic rods; Enterobacteriaceae.
REFERENCE 1 (bases 1 to 3732)
AUTHORS Chen,H., Sun,Y., Stark,T., Beattie,W. and Moses,R.
TITLE Nucleotide sequence and deletion analysis of the polB gene of
Escherichia coli
JOURNAL DNA Cell Biol. 9, 631-635 (1990)
STANDARD simple staff_entry
FEATURES Location/Qualifiers
CDS 463..1158
/EC_number="5.1.3.4"
/product="L-ribulose-5-phosphate 4-epimerase"
/gene="araD"
/codon_start=463
CDS 1233..3539
/product="DNA polymerase II"
/gene="polB"
/codon_start=1233
BASE COUNT 880 a 1032 c 1014 g 806 t
ORIGIN
1 gatcctcgct ggtggcgcgc accataccgt cttcagccat gcactgaacc tcaacgatat
61 gcgccaattc gccgagatgc acgacattga aatcacggtg attgataacg acacacgcct
121 gccagcgttt aaagacgcgc tgcgctggaa cgaagtgtat tacgggtttc gtcgctaagt
181 agccgcatcc ggtatgtaac gcctgatgcg acgctgacgc gtcttatctg gcctacacgc
241 tgcgattttg taggccggat aagcaaagcg catccggcat tcaacgcctg atgcgacgct
301 ggcgcgtctt atcaggccta cgcgctgcga ttttgtaggc cggataagca aagcgcatcc
361 ggcattcaac gcctgatgcg acgctggcgc gtcttatcag gcctacacgc tgcgattttg
421 taggccggat aagcaaagcg catccggcac gaaggagtca acatgttaga agatctcaaa
481 cgccaggtat tagaagccaa cctggcgctg ccaaaacaca acctggtcac gctcacatgg
541 ggcaacgtca gcgccgttga tcgcgagcgc ggcgtctttg tgatcaaacc ttccggcgtc
601 gattacagcg tcatgaccgc tgacgatatg gtcgtggtta gcatcgaaac cggtgaagtg
661 gttgaaggta cgaaaaagcc ctcctccgac acgccaactc accggctgct ctatcaggca
721 ttcccctcca ttggcggcat tgtgcatacg cactcgcgcc acgccaccat ctgggcgcag
781 gcgggtcagt cgattccagc aaccggcacc acccacgccg actatttcta cggcaccatt
841 ccctgcaccc gcaaaatgac cgacgcagaa atcaacggcg aatatgagtg ggaaaccggt
901 aacgtcatcg tagaaacctt tgaaaaacag ggtatcgatg cagcgcaaat gcccggcgtt
961 ctggtccatt cccacggccc gtttgcatgg ggcaaaaatg ccgaagatgc ggtgcataac
1021 gccatcgtgc tggaagaggt cgcttatatg gggatattct gccgtcagtt agcgccgcag
1081 ttaccggata tgcagcaaac gctgctggat aaacactatc tgcgtaagca tggcgcgaag
1141 gcatattacg ggcagtaatg actgtataaa accacagcca atcaaacgaa accaggctat
1201 actcaagcct ggttttttga tggattttca gcgtggcgca ggcaggtttt atcttaaccc
1261 gacactggcg ggacaccccg caagggacag aagtctcctt ctggctggcg acggacaacg
1321 ggccgttgca ggttacgctt gcaccgcaag agtccgtggc gtttattccc gccgatcagg
1381 ttccccgcgc tcagcatatt ttgcagggtg aacaaggctt tcgcctgaca ccgctggcgt
1441 taaaggattt tcaccgccag ccggtgtatg gcctttactg tcgcgcccat cgccaattga
1501 tgaattacga aaagcgcctg cgtgaaggtg gcgttaccgt ctacgaggcc gatgtgcgtc
1561 cgccagaacg ctatctgatg gagcggttta tcacctcacc ggtgtgggtc gagggtgata
1621 tgcacaatgg cactatcgtt aatgcccgtc tgaaaccgca tcccgactat cgtccgccgc
1681 tcaagtgggt ttctatagat attgaaacca cccgccacgg tgagctgtac tgcatcggcc
1741 tggaagcgtg cgggcagcgc atcgtttata tgctggggcc ggagaatggc gacgcctcct
1801 cgcttgattt cgaactggaa tacgtcgcca gccgcccgca gttgctggaa aaactcaacg
1861 cctggtttgc caactacgat cctgatgtga tcatcggttg gaacgtggtg cagttcgatc
1921 tgcgaatgct gcaaaaacat gccgagcgtt accgtcttcc gctgcgtctt gggcgcgata
1981 atagcgagct ggagtggcgc gagcacggct ttaaaaacgg cgtctttttt gcccaggcta
2041 aaggtcggct aattatcgac ggtatcgagg cgctgaaatc cgcgttctgg aatttctctt
2101 cattctcgct ggaaactgtc gctcaggagc tattaggcga aggaaaatct atcgataacc
2161 cgtgggatcg aatggacgaa attgaccgcc gtttcgccga agataaacct gcgctggcaa
2221 cttataacct gaaagattgc gagctggtga cgcagatctt ccacaaaact gaaatcatgc
2281 catttttact cgaacgggca acggtgaacg gcctgccggt ggaccgacac ggcggttcgg
2341 tggcggcatt tggtcatctc tattttccgc gaatgcatcg cgctggttat gtcgcgccta
2401 atctcggcga agtgccgccg cacgccagcc ctggcggcta cgtgatggat tcacggccag
2461 ggctttatga ttcagtgctg gtgctggact ataaaagcct gtacccgtcg atcatccgca
2521 cctttctgat tgatcccgtc gggctggtgg aaggcatggc gcagcctgat ccagagcaca
2581 gtaccgaagg ttttctcgat gcctggttct cgcgagaaaa acattgcctg ccggagattg
2641 tgactaacat ctggcacggg cgcgatgaag ccaaacgcca gggtaacaaa ccgctgtcgc
2701 aggcgctgaa aatcatcatg aatgcctttt atggcgtgct cggcaccacc gcctgccgct
2761 tcttcgatcc gcggctggca tcgtcgatca ccatgcgtgg tcatcagatc atgcggcaaa
2821 ccaaagcgtt gattgaagca cagggctacg acgttatcta cggcgatacc gactcaacgt
2881 ttgtctggct gaaaggcgca cattcggaag aagaagcggc gaaaatcggt cgtgcactgg
2941 tgcagcacgt taacgcctgg tgggcggaaa cgctgcaaaa acaacggctg accagcgcat
3001 tagaactgga gtatgaaacc catttctgcc gttttctgat gccaaccatt cgcggagccg
3061 ataccggcag taaaaagcgt tatgccggac tgattcagga gggcgacaag cagcggatgg
3121 tgtttaaagg gctggaaacc gtgcgcaccg actggacgcc gctggcccag cagtttcagc
3181 aggagctata cctgcgcatc ttccgcaacg agccatatca ggaatatgta cgcgaaacca
3241 tcgacaaact gatggcgggt gaactggatg cgcgactggt ttaccgtaaa cgccttcgcc
3301 gtccgctgag cgagtatcag cgtaatgtgc cgcctcatgt acgcgccgct cgccttgccg
3361 atgaagaaaa ccaaaagcgt ggtcgcccct tgcaatatca gaatcgcggc accattaagt
3421 acgtatggac caccacaggc ccggagccgc ctggactacc aacgttcacc actggattac
3481 gaacactatc tgacccgcca gctacaaccc gtggcggagg gaatactccc ttttattgag
3541 gataattttg ctacacttat gaccgggcaa cttgggctat tttgagcaaa aaaaagagtt
3601 cgccagatac cattttgatg cgtgacgaat gctttgccat ccagtaccat agcgcccttt
3661 ccattcctgg acctgaataa caccactacc tcataagcac ggtagcgggt ggttattgcc
3721 tgcaattaaa ga
//