GenBank-Updates@genbank.bio.net (04/04/91)
LOCUS MUSCOL2A1C 1528 bp ds-DNA ROD 04-APR-1991 DEFINITION Mouse alpha-1 type II collagen gene, exons 51 and 52. ACCESSION M63708 KEYWORDS alpha-1 type II collagen. SOURCE Mouse DNA. ORGANISM Mus musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (sites) AUTHORS Cheah,K.S.E., Au,P.K.C.., Lau,E.T., Little,P.F.R.. and Stubbs,L. TITLE The mouse Col2a-1 gene is highly conserved and is linked to Int-1 on chromosome 15 JOURNAL Mammal. Genome (1991) In press STANDARD full staff_review REFERENCE 2 (bases 1 to 1528) AUTHORS Cheah,K.S.E.., Au,P.K.C.., Lau,E.T., Little,P.F.R.. and Stubbs,L. TITLE The mouse Col2a-1 gene is highly conserved and is linked to Int-1 on chromosome 15 JOURNAL Mammalian Genome (1991) In press STANDARD full automatic FEATURES Location/Qualifiers CDS join(47..289,743..890) /product="alpha 1 type I collagen" /gene="Col2a-1" /codon_start=47 /partial mRNA join(47..289,743..1095) /product="alpha 1 type I collagen" /gene="Col2a-1" /partial mRNA join(47..289,743..1298) /product="alpha 1 type I collagen" /gene="Col2a-1" /partial intron 1..46 /function="intron" /cons_splice=(5'site: NO, 3'site: YES) /standard_name="alpha 1 type II collagen" /evidence=EXPERIMENTAL /citation=Mammal. Genome 1, ??-?? (1991) /partial exon 47..289 /number=exon 51 /standard_name="alpha 1 type II collagen" /note="encoding aa 143-224 of C-propeptide" /product="type II collagen C-propeptide region" /evidence=EXPERIMENTAL /citation=Mammal. Genome 1, ??-?? (1991) intron 290..742 /function="intron" /standard_name="alpha 1 type II collagen" /evidence=EXPERIMENTAL /citation=Mammal. Genome 1, ??-?? (1991) exon 743..1095 /number=exon 52 /standard_name="alpha 1 type II collagen" /note="includes termination codon and 3' UT" /product="type II collagen" /gene="col2a-1" /evidence=EXPERIMENTAL /citation=Mammal. Genome 1, ??-?? (1991) exon 743..1298 /number=exon 52 /standard_name="alpha 1 type II collagen" /note="alternative polyadenylation signal and cleavage" /product="type II collagen" /gene="col2a-1" /evidence=EXPERIMENTAL /citation=Mammal. Genome 1, ??-?? (1991) misc_signal 887..890 /function="type II collagen" /phenotype="translation termination codon" /evidence=EXPERIMENTAL /citation=Mammal. Genome 1, ??-?? (1991) 3'UTR 890..1095 /function="the result of one of 2 polyadenylation sites" /standard_name="alpha 1 type II collagen gene" /evidence=EXPERIMENTAL /citation=Mammal. Genome 1, ??-?? (1991) polyA_signal 1073..1078 /standard_name="alpha 1 type II collagen" /evidence=EXPERIMENTAL /citation=Mammal. Genome 1, ??-?? (1991) polyA_signal 1291..1296 /standard_name="alpha 1 type II collagen" /evidence=EXPERIMENTAL /citation=Mammal. Genome 1, ??-?? (1991) BASE COUNT 392 a 398 c 384 g 354 t ORIGIN 1 gatgctaggc ccctggtctc acaaccctcg cccctctgcc ccacagttca gctatggcga 61 tggcaacctg gctcccaaca ccgctaacgt ccagatgact ttcctccgtc tactgtccac 121 tgagggctcc cagaacatca cctaccactg taagaacagc atcgcctacc tggacgaagc 181 ggctggcaac ctcaagaagg ccttgctcat ccagggctcc aatgatgtag agatgagggc 241 cgagggcaac agcaggttca catacactgc cctgaaggat ggctgcacgg tgagtggggc 301 tgaggtcagc ctgtgacaaa tgtcactttc ctgtagtgaa gggactcatt agaggcttga 361 gtcgtggggg catgtgggag acaagctgag aggcagggat gggggaggag cgtataccat 421 actggcttgt ccacttcctc attcagaggc aataaagatg ctggcaagct cactaactct 481 tatagaagta ttcgtagaaa ctagcatagg agaggagagg ctatcccagg caggaagcct 541 ctgtgggaag gaggaagaca agtagaggag ggctctacca tcaaggggac aattgaagag 601 gagagggctt gggcaaatgg agagaagttc tagcaagcca cccagtgtcg tccctacctt 661 gtggctgctt agtttggggg tgctaagtag ccagtccttg ctgtaaggca tcgccaaatg 721 acacctcccc ttttctgcct agaaacacac tggtaagtgg ggcaagaccg tcatcgagta 781 ccgatcacag aagacctccc gccttcccat tattgacatc gcacccatgg acattggagg 841 ggctgaacag gaatttggtg tggacatagg gcctgtctgc ttcttgtaaa acccccgaac 901 cctgaaacaa cacaatccat tgcgaaccca aaggacccaa acactttcca accgcagtca 961 ctccaggatc tgcactgaat ggctgacctg acctgatgat acccaaccgt cctcccctca 1021 cagcccggac tgtgctcccc tttctaagag acctgaactg ggcagactgc aaaataaaat 1081 ctcggtgttc tatttattta ttgtcttcct gtaagacctc tgggtccagg cggagacagg 1141 aactatctgg tgtgagtcag acgccccccg agtgactgtt cccagcccag ccagaagacc 1201 cctacagatg ctgggcgcag ggactgctgt cctacacaat ggtgctattc tgtgtcaaac 1261 acctctgtat tttttaaaac atcaattgat attaaaaacc aaaaaaaaaa aaatcattgg 1321 aaaggatatg gtgacttgtg ttttgttctt tgttttgttc ttccggttgt atttactagt 1381 ccttggttct ataaggcatg cccaaatatg gtcccaggac tgtctgtgga ccttacaatc 1441 caggatgctg aagtcacact gcctggtttg gtgatgtcac tcacacacac aaaagacctg 1501 cctctcttgt aaacttgggc actttgtg //