GenBank-Updates@genbank.bio.net (04/05/91)
LOCUS MUSCOL2A1A 861 bp ds-DNA ROD 05-APR-1991
DEFINITION Mouse alpha-1 type II collagen gene, 5' end, exon 1.
ACCESSION M63710
KEYWORDS alpha-1 type II collagen.
SOURCE Mouse DNA.
ORGANISM Mus musculus
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
REFERENCE 1 (bases 1 to 861)
AUTHORS Cheah,K.S.E., Au,P.K.C.., Lau,E.T., Little,P.F.R.. and Stubbs,L.
TITLE The mouse Col2a-1 gene is highly conserved and is linked to Int-1
on chromosome 15
JOURNAL Mammal. Genome (1991) In press
STANDARD full staff_review
FEATURES Location/Qualifiers
CAAT_signal 55..58
/standard_name="inverted CAAT signal"
/evidence=EXPERIMENTAL
/citation=Mammal. Genome 1, ??-?? (1991)
GC_signal 59..137
repeat_unit 71..107
/rpt_type=direct
/evidence=EXPERIMENTAL
/citation=Mammal. Genome 1, ??-?? (1991)
repeat_unit 186..196
/rpt_type=direct
/evidence=EXPERIMENTAL
/citation=Mammal. Genome 1, ??-?? (1991)
TATA_signal 227..232
repeat_unit 242..273
/rpt_type=direct
/evidence=EXPERIMENTAL
/citation=Mammal. Genome 1, ??-?? (1991)
exon 255..490
5'UTR 255..405
CDS 406..490
/product="alpha-1 type II collagen"
/gene="Col2a-1"
/codon_start=406
/partial
sig_peptide 406..468
/gene="Col2a-1"
/codon_start=406
mat_peptide 469..490
/product="alpha-1 type II collagen"
/gene="Col2a-1"
/codon_start=469
/partial
intron 491..491
repeat_unit 812..851
/function="sp1 binding site"
/bound_moiety="sp1"
/rpt_type=direct
/evidence=EXPERIMENTAL
/citation=Mammal. Genome 1, ??-?? (1991)
BASE COUNT 144 a 268 c 280 g 169 t
ORIGIN
1 gtcccggcga ccggaggctg tctcggtgcc ccgcccgatc aggccactgg gcacattggg
61 ggcgggaagc tgggctcacg aaaggggcga ctggccttgg caggtgtggg ctctggtccg
121 gcctgggcgg gctccggggg cggggtctca ggttacagcc ccgcgggggg ctagggggcg
181 gcccgcggtt tgggccggtt tgccagcctt tggagcgacc gggagcatat aactggagcc
241 tctgccgggg gaagacgcag agcgccgctg ggctgccggg tctcctgcct cctcctgctc
301 ctagggcctc ctgcatgagg gagcggtaga gacccggacc cgctccgtgc tctgccgcct
361 cgctgcgctt cgcccgggcc aggctctgca ggctcgcggt gagccatgat ccgcctcggg
421 gctccccagt cgctggtgct gctgacgctg ctcatcgccg cggtcctacg gtgtcagggc
481 caggatgccc gtaagtcgcc cgccgcccct gcctacttcc ctgacttgtg acccttttcc
541 tcctactccc tcccccaagt actggtccgg gttagggcgc taagtcctaa gcgcaggtat
601 acaggagtac actgatccta attctgcgag aaggacctct gtcgcagcat cttcagtgag
661 agtcacgatt ggagactttc tcaggtccct gcgttaagca aggatatgca acaggtttga
721 acacagacgc atcaccttcc accagctttg accaggacgt ttcgagctca gtaaaagaag
781 ccccacactt aaaagtagga gagaaatcga gagacgctac gggttgattt atcagcctag
841 tctaggggtt agacgctgca g
//