GenBank-Updates@genbank.bio.net (04/04/91)
LOCUS RATTCBC2 3203 bp ds-DNA ROD 04-APR-1991
DEFINITION Rat T-cell receptor beta-chain, TCBC2A.
ACCESSION M63794
KEYWORDS T-cell receptor beta chain.
SEGMENT 2 of 3
SOURCE R.norvegicus DNA.
ORGANISM Rattus norvegicus
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
REFERENCE 1 (bases 1 to 3203)
AUTHORS Gutman,G.A., Levinson,G., Byrd,K., Blankenhorn,E.P. and
Williams,C.B.
TITLE Organization and nucleotide sequence of the rat T-cell receptor
beta-chain complex
JOURNAL J. Immunol. (1991) In press
STANDARD full staff_review
COMMENT Genomic sequence of the rat T-cell receptor beta chain constant
region complex, including D-beta-2, and J-beta-2.1 through 2.6. A
cryptic rearrangement signal described in reference [1] is noted.
This sequence is approximately 2.8kb 3' of RATTCBC1 (containing the
C-beta-1 D and J segments as well as the C-region exons), and 500bp
5' of RATTCBC2A (containing the C-beta-2 constant region exons).
FEATURES Location/Qualifiers
misc_feature 231..245
/product="D beta-2 segment"
/citation=J. Immunol. ??, ??-?? (1991)
misc_feature 824..873
/product="J beta-2.1 (aa at 2)"
/citation=J. Immunol. ??, ??-?? (1991)
misc_feature 1027..1077
/product="J beta-2.2 (aa at 3)"
/citation=J. Immunol. ??, ??-?? (1991)
misc_signal 1046..1073
/function="cryptic rearrangement signal #11"
/citation=J. Immunol. ??, ??-?? (1991)
misc_feature 1278..1326
/product="J beta-2.3 (aa at 1)"
/citation=J. Immunol. ??, ??-?? (1991)
misc_feature 1429..1477
/product="J beta-2.4 (aa at 1)"
/citation=J. Immunol. ??, ??-?? (1991)
misc_feature 1518..1561
/product="J beta-2.5 (aa at 1)"
/citation=J. Immunol. ??, ??-?? (1991)
misc_feature 1858..1904
/product="J beta-2.6 (aa at 2)"
/citation=J. Immunol. ??, ??-?? (1991)
BASE COUNT 841 a 709 c 838 g 813 t 2 others
ORIGIN
1 gagagaacat gttcagaaca ggggctccct ccctgcatca acaacaccac catcagtccc
61 aagaacatct ccaagctcct cccctcctaa gatttaccca gcttgagatt ttncccagcc
121 cctctcagtc agacaaacct ctctgccacc tggtctccct gcccctgccc aggcactggg
181 tagggcacct gcagggaaga aacttttttg tatcatggtg taacattgtg gggactgggg
241 ggggccacaa tgattcaact ggaagaggtg cttttacaaa aagctctaac ccccaaaaca
301 ccaactctct gtccaagaaa tgcatttaac atgtgaggag gagtctgtgt gagtggacct
361 acaaggtctt ctaatagcta agcattttct tgtcctagaa agcttcccat gagtctcaaa
421 gggaagtggg ttcacattca gccctaatca tgactcttac catcaacaaa gtatctgtac
481 atgcagggta aattgagaac ttattaaaaa gtattgagta aataaatata ccctttgttg
541 gaaagactgt acaagtcctt tctcattgga ggctactcag acacagcagg tagccctcag
601 atttcaaagt cactttgcta acccctgagt gaattgtatg gatattcgtt cccaagccaa
661 aggttgtatc tcttcttcaa tttgagatct taagataggc ctcatgcaag gtcaagattg
721 cattacccat tctggaggta gatggagaat gtgagtaacc ccgggtctat gctgaggaag
781 gtgaggaagc aggaagaatt cgtggcagcc cttttctgct gtgttcctat gctgaacagt
841 tcttcggatc agggacacga ctcacggtcc taggtaagaa aacagaggcc acacaggtag
901 gggagaaggt gggacagtca cccacaagga cccctggagc agaaagcctt agcagagtct
961 acctttgact atctaaggcc ctgtatcagg gaagaggagg tttgtgccac catccccagg
1021 actgtgcaaa caccgggcag ctatactttg gtgaaggctc aaagctgaca gtgctgggta
1081 aggagggctg aactgtactg tgggagtaag agggacagag caggactatt cagtgtcctc
1141 ttggtctgag ctaacctgcc tgggcagaag gatttctgta ttggatactg ggaacagtaa
1201 agcactcatg gtttggggtt gggacagcag gaggcagcgg cagcactgag tttttacttc
1261 tgagcctgaa ggctgtgact acagacaaga tatattttgg ctcaggaacc agactgaccg
1321 ttctcggtaa gttgggagct agtcgtgaag gggagggagc atttccttga agggactccc
1381 aggtaaaaat agccagggct agtttttntc ctgtgctaag aggctgtgag tcaaaacacc
1441 ttgttcttcg gtgcaggcac ccgactgtcg gtgctaggta agctggtaca gtttttgtgt
1501 tggtttctgg ggctgtgaac caagataccc agtactttgg accaggcact cgcctcctta
1561 ggtgagctgg ggccccacgc gcgcgttggc agcgggatat ggctgcagtg ggctcgggtc
1621 ccttggctgg gtttctcttg gagttcacag ggttgtgcag cccttgccct gggttgaacc
1681 tcccgtgtga gcttcttagc aattgcagcg gcaagttctg gggctgctgg cgtctttgcc
1741 cagggttctc aggcccttcg cgccgggaga gggaggctga atgcagggag attgtcccta
1801 aactggggaa tacctcgctg agccccgcgg gtttgtgtgt ggggtcgcgc ctccgtgctc
1861 ctatgagcag tatttcggtc ccggcaccaa gctcacggtt ttaggtaaga tttatatctt
1921 tccccgcccc ccccacccgc cctaattcct gggtccctgg aggaaattgg gattgagcgg
1981 gttaagtctc ccgggggaat cggtaatggg agacagctct caacttcgcc ttttctggga
2041 gagctggatg agacagggta ttgggtgcca aagcatttct cttgcaagcc aggacaaggt
2101 aagtttcttt ctcttttctc tgaggtatgc atgcgctggg tgggcggtgg agaaaaagga
2161 ttattcaaga ctctggaatc aaacttggtt ttgaaagtaa aggcaggtaa caaagaacta
2221 aaaggcagag aaaggcgggg agctttccca gaggtagagt tctcactggc aaaagttgtc
2281 caaaagagag agggattttt ttttttttaa aggggaagga gtctagcaat aaaccaagga
2341 caaacctaaa ctagaacaga agaatcaaaa gcctggtggt gttcgcatgt gattaaattc
2401 catctactgc tttaccttgg gatcccttga agcaccatgg aaacccagta tccacacatt
2461 ctcatgactg gtcagcccaa aggccggggg aacttagtca ctggggtctg tttatcctca
2521 ggttattcgc ctgactcctg acctaaaatc tgcactgttc acaccgtgaa ttccaggcta
2581 gacagacagg ctatatcacg aatggggttc gttgatcaaa ggcatacatt aaactacaga
2641 catttagctt ggggaaaaaa atgcttgaaa aaccttaggg tcccagtatt agaatcgacc
2701 ttaaatatca ccttgacagt gagggccaag gttataaaaa aagaaataat tcacagcttg
2761 gttatgttaa cctgtattat ttggtaacca tagtaacagt agacatcatt tgtgattgga
2821 acattaagtt ggatccaagg gaactcagcc atgttaaatt gtgtctaagg gaaatgttgg
2881 gtccctgtag tcacgtggga taaagaaaag agacagactt tatagccaga tgaggctggt
2941 ttccagtcct ggttctttga tgataaggta agcttaggcc tgttagtgtg tgaacctatt
3001 caatggagac agatagtggg gcagtttgga aaagggaaga gaagttttat aattttactc
3061 atagctagtc cagtttgcaa gcaaatcaca taccaggagc agctcactta tgcacaattc
3121 actttcatag gcaattatac ctcgaaagaa ccctcatgaa ctcacataca tggatattta
3181 gctgccccca gtctccctgt gga
//GenBank-Updates@genbank.bio.net (04/09/91)
LOCUS RATTCBC2 3203 bp ds-DNA ROD 09-APR-1991
DEFINITION Rat T-cell receptor beta-chain, TCBC2A.
ACCESSION M63794
KEYWORDS T-cell receptor beta chain.
SEGMENT 2 of 3
SOURCE R.norvegicus DNA.
ORGANISM Rattus norvegicus
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
REFERENCE 1 (sites)
AUTHORS Gutman,G.A., Levinson,G., Byrd,K., Blankenhorn,E.P. and
Williams,C.B.
TITLE Organization and nucleotide sequence of the rat T-cell receptor
beta-chain complex
JOURNAL J. Immunol. (1991) In press
STANDARD full staff_review
COMMENT Genomic sequence of the rat T-cell receptor beta chain constant
region complex, including D-beta-2, and J-beta-2.1 through 2.6. A
cryptic rearrangement signal described in reference [1] is noted.
This sequence is approximately 2.8kb 3' of RATTCBC1 (containing the
C-beta-1 D and J segments as well as the C-region exons), and 500bp
5' of RATTCBC2A (containing the C-beta-2 constant region exons).
FEATURES Location/Qualifiers
misc_feature 231..245
/product="D beta-2 segment"
/citation=J. Immunol. ??, ??-?? (1991)
misc_feature 824..873
/product="J beta-2.1 (aa at 2)"
/citation=J. Immunol. ??, ??-?? (1991)
misc_feature 1027..1077
/product="J beta-2.2 (aa at 3)"
/citation=J. Immunol. ??, ??-?? (1991)
misc_signal 1046..1073
/function="cryptic rearrangement signal #11"
/citation=J. Immunol. ??, ??-?? (1991)
misc_feature 1278..1326
/product="J beta-2.3 (aa at 1)"
/citation=J. Immunol. ??, ??-?? (1991)
misc_feature 1429..1477
/product="J beta-2.4 (aa at 1)"
/citation=J. Immunol. ??, ??-?? (1991)
misc_feature 1518..1561
/product="J beta-2.5 (aa at 1)"
/citation=J. Immunol. ??, ??-?? (1991)
misc_feature 1858..1904
/product="J beta-2.6 (aa at 2)"
/citation=J. Immunol. ??, ??-?? (1991)
BASE COUNT 841 a 709 c 838 g 813 t 2 others
ORIGIN
1 gagagaacat gttcagaaca ggggctccct ccctgcatca acaacaccac catcagtccc
61 aagaacatct ccaagctcct cccctcctaa gatttaccca gcttgagatt ttncccagcc
121 cctctcagtc agacaaacct ctctgccacc tggtctccct gcccctgccc aggcactggg
181 tagggcacct gcagggaaga aacttttttg tatcatggtg taacattgtg gggactgggg
241 ggggccacaa tgattcaact ggaagaggtg cttttacaaa aagctctaac ccccaaaaca
301 ccaactctct gtccaagaaa tgcatttaac atgtgaggag gagtctgtgt gagtggacct
361 acaaggtctt ctaatagcta agcattttct tgtcctagaa agcttcccat gagtctcaaa
421 gggaagtggg ttcacattca gccctaatca tgactcttac catcaacaaa gtatctgtac
481 atgcagggta aattgagaac ttattaaaaa gtattgagta aataaatata ccctttgttg
541 gaaagactgt acaagtcctt tctcattgga ggctactcag acacagcagg tagccctcag
601 atttcaaagt cactttgcta acccctgagt gaattgtatg gatattcgtt cccaagccaa
661 aggttgtatc tcttcttcaa tttgagatct taagataggc ctcatgcaag gtcaagattg
721 cattacccat tctggaggta gatggagaat gtgagtaacc ccgggtctat gctgaggaag
781 gtgaggaagc aggaagaatt cgtggcagcc cttttctgct gtgttcctat gctgaacagt
841 tcttcggatc agggacacga ctcacggtcc taggtaagaa aacagaggcc acacaggtag
901 gggagaaggt gggacagtca cccacaagga cccctggagc agaaagcctt agcagagtct
961 acctttgact atctaaggcc ctgtatcagg gaagaggagg tttgtgccac catccccagg
1021 actgtgcaaa caccgggcag ctatactttg gtgaaggctc aaagctgaca gtgctgggta
1081 aggagggctg aactgtactg tgggagtaag agggacagag caggactatt cagtgtcctc
1141 ttggtctgag ctaacctgcc tgggcagaag gatttctgta ttggatactg ggaacagtaa
1201 agcactcatg gtttggggtt gggacagcag gaggcagcgg cagcactgag tttttacttc
1261 tgagcctgaa ggctgtgact acagacaaga tatattttgg ctcaggaacc agactgaccg
1321 ttctcggtaa gttgggagct agtcgtgaag gggagggagc atttccttga agggactccc
1381 aggtaaaaat agccagggct agtttttntc ctgtgctaag aggctgtgag tcaaaacacc
1441 ttgttcttcg gtgcaggcac ccgactgtcg gtgctaggta agctggtaca gtttttgtgt
1501 tggtttctgg ggctgtgaac caagataccc agtactttgg accaggcact cgcctcctta
1561 ggtgagctgg ggccccacgc gcgcgttggc agcgggatat ggctgcagtg ggctcgggtc
1621 ccttggctgg gtttctcttg gagttcacag ggttgtgcag cccttgccct gggttgaacc
1681 tcccgtgtga gcttcttagc aattgcagcg gcaagttctg gggctgctgg cgtctttgcc
1741 cagggttctc aggcccttcg cgccgggaga gggaggctga atgcagggag attgtcccta
1801 aactggggaa tacctcgctg agccccgcgg gtttgtgtgt ggggtcgcgc ctccgtgctc
1861 ctatgagcag tatttcggtc ccggcaccaa gctcacggtt ttaggtaaga tttatatctt
1921 tccccgcccc ccccacccgc cctaattcct gggtccctgg aggaaattgg gattgagcgg
1981 gttaagtctc ccgggggaat cggtaatggg agacagctct caacttcgcc ttttctggga
2041 gagctggatg agacagggta ttgggtgcca aagcatttct cttgcaagcc aggacaaggt
2101 aagtttcttt ctcttttctc tgaggtatgc atgcgctggg tgggcggtgg agaaaaagga
2161 ttattcaaga ctctggaatc aaacttggtt ttgaaagtaa aggcaggtaa caaagaacta
2221 aaaggcagag aaaggcgggg agctttccca gaggtagagt tctcactggc aaaagttgtc
2281 caaaagagag agggattttt ttttttttaa aggggaagga gtctagcaat aaaccaagga
2341 caaacctaaa ctagaacaga agaatcaaaa gcctggtggt gttcgcatgt gattaaattc
2401 catctactgc tttaccttgg gatcccttga agcaccatgg aaacccagta tccacacatt
2461 ctcatgactg gtcagcccaa aggccggggg aacttagtca ctggggtctg tttatcctca
2521 ggttattcgc ctgactcctg acctaaaatc tgcactgttc acaccgtgaa ttccaggcta
2581 gacagacagg ctatatcacg aatggggttc gttgatcaaa ggcatacatt aaactacaga
2641 catttagctt ggggaaaaaa atgcttgaaa aaccttaggg tcccagtatt agaatcgacc
2701 ttaaatatca ccttgacagt gagggccaag gttataaaaa aagaaataat tcacagcttg
2761 gttatgttaa cctgtattat ttggtaacca tagtaacagt agacatcatt tgtgattgga
2821 acattaagtt ggatccaagg gaactcagcc atgttaaatt gtgtctaagg gaaatgttgg
2881 gtccctgtag tcacgtggga taaagaaaag agacagactt tatagccaga tgaggctggt
2941 ttccagtcct ggttctttga tgataaggta agcttaggcc tgttagtgtg tgaacctatt
3001 caatggagac agatagtggg gcagtttgga aaagggaaga gaagttttat aattttactc
3061 atagctagtc cagtttgcaa gcaaatcaca taccaggagc agctcactta tgcacaattc
3121 actttcatag gcaattatac ctcgaaagaa ccctcatgaa ctcacataca tggatattta
3181 gctgccccca gtctccctgt gga
//