GenBank-Updates@genbank.bio.net (04/10/91)
LOCUS S41MFHN 5281 bp ss-RNA VRL 10-APR-1991
DEFINITION Simian virus 41 matrix protein (M), fusion protein (F), and
hemagglutinin-neuraminidase (HN) genes.
ACCESSION M62733 D90338
KEYWORDS fusion protein; hemagglutinin-neuraminidase; matrix protein.
SOURCE Simian virus 41, cDNA to viral RNA.
ORGANISM Simian virus 41
Viridae; ss-RNA enveloped viruses; Negative strand RNA viruses;
Paramyxoviridae; Paramyxovirus.
REFERENCE 1 (bases 1 to 5281)
AUTHORS Tsurudome,M., Bando,H., Nishio,M., Iwamoto,Y., Kawano,M., Kondo,K.,
Komada,H. and Ito,Y.
TITLE Antigenic and structural properties of a paramyxovirus simian virus
41 (SV41) reveal a close relationship with human parainfluenza type
2 virus
JOURNAL Virology 179, 738-748 (1990)
STANDARD simple staff_entry
FEATURES Location/Qualifiers
CDS 3422..5128
/product="hemagglutinin-neuraminidase"
/gene="HN"
/codon_start=3422
BASE COUNT 1560 a 1260 c 1018 g 1443 t
ORIGIN
1 aatctgcact gtccgggttt aagaaaaaac caagtgtcaa gagcatcaga taggcacgaa
61 cctaacacac cccgagacac accagccaca cacatccggg ccgaccagca gccatgccca
121 ccatatccat ccccgctgat cccgcatctc cagaccaggg cctaaaaccc tttccaatcc
181 aacttgactc caaggacggg aaaagtggga agcttgtgaa gcaaatcaga atcaaatacc
241 ttactgagcc caactcaaga tcacccccac ttacattcat caatacttac ggtttcatct
301 atgcacgaga tttgagtggt gggatcatga atgagcaatc atcggggatc cagtctggat
361 cagtaaccgc ctgcatgatg actctaggtc ctggtcctga cattaagaac gcaaacagag
421 tcttggccgc actgaatgga ttctatgtta aagtcagaaa aacttctagc cttaaagagg
481 aagcggtctt tgagcttgtt aatgttccaa aattattggc aaaccatgca ctgtgtaagc
541 aggggagact ggtatgttct gctgagaagt tcgttaagaa cccatctaag atgatggccg
601 gtcaggaata cctgtacttt ccaacatttg tgtccttgac ttactgtcca tcaaatctca
661 attatcaagt tgcgaaaccg attctaaaga ttcgatccag atttgtctac agtatccata
721 tggagattat tttcagattg ctctgtaaac ctgattcccc actattgaag acttatgcaa
781 ctgatcctga aggcaggggc tgccttgcat cagtatggat ccatgtgtgt aacattctca
841 agaacaagaa gatcaaacaa agaggggttg atagctattt ttcaagtaag gctatcagca
901 tgcaactgac tgtctcaatt gctgatacat ggggccccac tgtgataatc aaggccaacg
961 gtcatattcc taagactgca gctcctttct tcagtaaaga tggtgtagca tgtcaccccc
1021 ttcaggatgt atcccctgct ttgacaaagt cactatggtc ggtggggtgt gagatcacca
1081 aggctcgact aatcttacag gaatcaaaca tcagtgacct cctcaagaca caggatttga
1141 tcactgatca gattaagatc aagaaaggtc attcacactt tggccgatca tccttcaacc
1201 cattcaaaaa agctatctct ttacccaacc tgacccaatt ggggcaagat gatgaagatt
1261 aacctccatg caaagaaata tacaattgca tagttatagt atcctctcaa taatcagtcg
1321 agtaactaat tgtcaatata ctctaagcag tgctatcaaa tttataaatt ttaatcttag
1381 attaggtccg aacccaggca caaccgcccc acaccccacc gacccgccac cgccccactc
1441 actgccaaca agcaatcatc aaacactaca ttgagtgata atgaggctaa ctccctaccc
1501 tatcgctctc actacactta tgattgcttt aacaacacta cctgaaactg gattagggat
1561 tgctcgggat gctttgagcc aggttggagt gatccaatca aaagctagat cactgatgta
1621 ctattccgat ggaagttcaa gttttattgt agtgaaattg ctccctactc tccctactcc
1681 atctggcaat tgcaatctga caagcattac tgcttataac actacattat ttaaattgct
1741 tacgcccctg atggaaaatc tggacaccat tgtgagtgca aaccaagctg gcagcagaag
1801 aaagagattt gctggtgttg ttgtaggctt agctgccctg ggagtagcaa ctgcagccca
1861 agtgaccgca gctgtggcag tagtcaaagc caatgccaat gcagctgcta tcaataagtt
1921 ggctgcctct atccagtcta ccaatgcagc catctctgac gtgatatcat caactagaac
1981 actagcgaca gcaattcaag ctgtccaaga tcatgtaaat ggggtgctgg caagtggctt
2041 gacagaggca aactgtaggt cccaagatgc attgattgga tcaatcctga atctctatct
2101 aactgaactc actacaattt tccataatca aattgtcaat cccgcattaa ctccactgtc
2161 tatccaagca ctacgaataa ttctaggaag cactctccca cttattgttg aatcacggtg
2221 gaatacaaat ctaaatacag cagaactctt aagttccggg ctattaactg ggcaaatcat
2281 atcgatctct ccatcctata tgcagatggt gatccagatt acagtcccta cctttgttat
2341 gcaaccaggg gcaaagatta tcgatttagt tacaatcacg gccaatcgaa tggaagaaga
2401 ggtattgatt caagttccgc caagaatcct tgagtatgca aacgagattc aggcatatac
2461 cgcggatgat tgtgttgtaa cccctcatgc agtcttttgt aagtacaatg acggctctcc
2521 catctctgat agcttatatc aatgccttaa agggaattta acatcctgtg tattcactcc
2581 agtagttgga aattatctta agcgatttgc atttgccaat ggggtaatgt atgttaattg
2641 caaagccctt ctatgtcgct gtgctgatcc gccaatggtc attacgcagg acgatctagc
2701 aggaatcaca gtaatagaca ttactgtctg tagagaagtc atgctagata cattagcatt
2761 taagattact tctctgaaca atgttactta tggtgctaat ttctcaatgc tggcagcggc
2821 catcaaagac ctctctccat tagatctttc agcccagttg gcccaagtca acaagtcgtt
2881 ggcgtctgca gaagagaaaa ttgcgcagag ttcctcactt gcagcacaag cagtatccca
2941 agaagctaca atcactgtcg gatcagttgc aatgctcatt gctgttctcg cgctaattgc
3001 tggttgcaca gggattatga ttgcagtcca gatgagccgt aggttagagg tacttaggca
3061 tttaactgat caaagcatta tatcaaatca tcactatgct gaattgaacc ccccaccata
3121 taaccactcc tatgaatcat tacatcctat tccacaaagc cattgattct aattacagta
3181 taagtaagct gttaactacc cattaatata catgtttctt gaactaatca ttcctatata
3241 tttaatttaa gaaaaaatga taggcacgaa cccttatggt gccgtaacgt ctcgtggcac
3301 tgggttcaac aaaaccctcg ctttagacac tacatccaat ttcctttccc tatccaatca
3361 attacctcac agttggtaac ccactacaag aagtcatata cactacactg gtgccgccac
3421 catgtccgga gcagagggta acaccaacaa gcggacattt agggcagtat tcaggacact
3481 aatcattctt attactctca cgatattagc cttaagtgcg gctattcttt atgaagtcac
3541 tcatacaagt aatggttctg agtcaaacaa ccaggtgttt gaccctactg acactctaaa
3601 tgccattaca ggaaatatca aatcaatgat tgccctgctg aatcaaatat tgtataatgc
3661 agcaattgct ttaccgctca agattgacag tactgaatca gtcctcctcg cagcaattaa
3721 agatttgcaa ttcagtaacc ctgcctctca aaactgctct tctggcggaa atttactaaa
3781 tgatgcactt tacattaatg gcatcaatca atacttgctc tctaattcat ttgcaggaac
3841 tgtaggtctt ggtccactat taaatatacc aagcttcatt ccatctgcca ctgcacctgg
3901 aggctgcact aggatcccat ccttttcgtt gacaaagacg cattggtgct attcacacaa
3961 tgtcattcta gcaggatgtg cagactcaaa ggcatctaat caataccttg cgatgggtat
4021 tgttgagcag tcgtctgcag acttcccatt cttccgtacc atgagaacgc tctacctaag
4081 cgacggtatt aaccgtaaga gctgctcaat tgtagccatt ccaggcgggt gtgctcttta
4141 ttgctatgtt gctactaaaa cagaacagga agactatgct gcaactactc cttcagagtt
4201 gagattaaca ttttattact ataatgaaac cctagtagaa aggacattga ctataccaaa
4261 tgtcaccggg aattgggcca cacttaaccc agctgttgga agtggagtat atcatttggg
4321 ctatcttgca ttccctgtgt atggtgggct aatacagaac agtgcagcat ggaacagtca
4381 atttgggtcg tactttctcc cccaaaatcc agcagtgcag tgttccggat cagcagagca
4441 acaaataaat actgctaagg ggtcatatgt tgtcaattgg ttctcaggac gcctaatcca
4501 aagcgcagtc cttgtttgcc cactaagcga tcaactaacc gaccagtgtc gagttgtgct
4561 gttcaataat tccgagacca tgatgggagc tgaaggccgg ctatacacca ttgggggtga
4621 cctctactac tatcaaagaa gctcatcctg gtggaccgca tcgttactct acaagattaa
4681 cactgatttt tctcaagggc ttccaccgtt aattgaagca caatgggtgc caacctactt
4741 agtaccaagg cctggagccc aaccatgcag tgcaggtaat ttttgtcctg ccaactgtat
4801 taccggagtc tatgctgatg tctggcctat gaacaatcca ttccctgcag ggagctcagg
4861 agtcaatcca aactacttat ttggtggggc ttttctgtgg gctgacgttg cccgtgttaa
4921 tccgacattt tatatggctt ctgctacaca atataaaaac actacaggct tccctaactc
4981 caatcagaaa gctgcataca ctagtaccac gtgctttcaa aataccggca gtaagaaaat
5041 ctactgttta ttcataattg aaatgggatc ctcgttaatg ggagagttcc agattgttcc
5101 atttttgcgt gaggtgatca ttacttagga accatactca taatatgttc aaacctatta
5161 cataaccata gttgacagca cccactatga ttatcaagat ttaagcccaa tcaaatccat
5221 ttctcccatt tgatggtaca cttaagcaat tactacaaag aatgatttat ttaaagaaaa
5281 a
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