GenBank-Updates@genbank.bio.net (02/21/91)
LOCUS MOPGPCNC 3419 bp ss-RNA VRL 21-FEB-1991
DEFINITION Mopeia virus glycoprotein (GPC) and nucleocapsid protein genes,
complete cds.
ACCESSION M33879
KEYWORDS glycoprotein; nucleocapsid protein; small RNA segment.
SOURCE Mopeia virus (strain 800150), cDNA to viral RNA.
ORGANISM Mopeia virus
Viridae; ss-RNA enveloped viruses; Negative strand RNA viruses;
Arenaviridae.
REFERENCE 1 (bases 1 to 3419)
AUTHORS Wilson,S. and Clegg,J.
TITLE Sequence analysis of the S RNA of the African arenavirus mopeia: An
unusual secondary structure feature in the intergenic region
JOURNAL Virology 180, 543-552 (1991)
STANDARD full staff_review
COMMENT Draft entry and computer-readable [or printed] sequence for
[Unpublished (1990)]
kindly submitted by J.C.S.Clegg, 26-APR-1990.
Author address: J.C.S.Clegg
PHLS Centre for Applied Microbiology and Research
Porton Down, Salisbury SP4 OJG,
UNITED KINGDOM
FEATURES Location/Qualifiers
CDS 47..1516
/note="glycoprotein"
/codon_start=47
CDS complement(1640..3352)
/note="nucleocapsid protein"
/codon_start=3352
BASE COUNT 875 a 819 c 736 g 989 t
ORIGIN
1 gtggatccta ggctttttgg ttgcgcattt ctagagcatc tcggagatgg ggcagatagt
61 caccttcttt caagaggtgc cacacatcct tgaagaagtg atgaacattg tgctgatgac
121 cctctcaatc ttggccatcc taaagggcat ctacaatgtg atgacctgtg gaatcatcgg
181 tttgataaca tttttgtttt tgtgtgggag atcatgctca agcatctata aggacaacta
241 tgagttcttc tctctcgacc tcgacatgtc ttcactgaat gcaacgatgc ctctctcctg
301 ctcaaagaac aactcccatc actacatcca agttgggaat gagacaggcc tagagctgac
361 attgacaaac actagcataa ttaatcataa gttttgcaac ctgtctgatg ctcacaggag
421 gaatctttat gacaaagcac ttatgtcaat cttgacaaca ttccacctaa gcattccaga
481 ttttaaccaa tatgaggcaa tgtcatgtga ttttaacgga gggaagatct cagttcaata
541 caacctgtcc cactcaaatt atgtggatgc cggcaaccac tgtggcacta ttgcaaatgg
601 cattatggat gtttttagaa gaatgtattg gagcacctcc ctttcggttg cctctgacat
661 aagtgggact caatgcatac agaccgatta taagtatttg attattcaga acacatcatg
721 ggaggatcat tgcatgttct caagaccctc acccatggga tttttaagcc ttctgtcaca
781 gagaaccagg aatttctaca tctcaagaag acttttgggt ctttttacat ggactttgag
841 tgactcggaa gggaacgaca tgccaggtgg ttactgtctc acaaggtcta tgctaatagg
901 gcttgatctg aaatgctttg ggaacactgc cattgcgaag tgtaatcagg cacatgatga
961 agaattctgt gacatgctcc gcctttttga ttttaataaa caagcaatta gcaaactgag
1021 gtctgaagtt cagcagagca taaatttgat aaataaagct gtcaacgccc tcatcaatga
1081 tcaactggtc atgaggaacc atttgagaga tctaatgggt attccttatt gcaactactc
1141 taagttttgg tacttgaatg atactaggac agggagaaca tccctcccaa agtgttggct
1201 tgtgaccaat gggtcatacc taaatgaaac ccagttctca acagaaattg agcaagaagc
1261 caataacatg ttcactgaca tgttgaggaa ggagtatgag aaaaggcaga gcacaacacc
1321 tctggggtta gtagatcttt ttgttttctc cactagcttt tatttgatct ccgtgttcct
1381 ccacctaatc aaaattccaa cacatagaca cataaaaggc aagccttgcc cgaaaccaca
1441 cagactcaat cacatggcaa tctgttcctg tggcttctat aagcaaccag gtctccccac
1501 acaatggaaa aggtgaagaa caggggcacc cccgagaccc accgccttcg gcggtgggtc
1561 tcgggggcct ggagtgactg ttccttgatg gcctccacga cccaccgcca gaggcggtgg
1621 gtcgtggagg tgtcccttct tacaggacaa ctctgggagg acctgttcta aacaccaggt
1681 ctctactcaa gactggtctg ggggttggga tttgtggact ccctatgact gctgcttcaa
1741 acatgagaca atccagcaat gcacagtgtg gtgtcacttc ttctttgcca cctctcttct
1801 tcttttgcgt tacaatcccc gtatgcattc tacaaaggtg tttgtattca tcccagatct
1861 tatcctcaaa ttttcttgca tcgtctttct gcatggacac atcaatcagt tttatgtccc
1921 tcctgttctg ggagtcaaga agctttctga tgtcatcagc accttgacac gacaagacca
1981 tgttctttgg caggctctca attacagcac ttgtcaaccc cggctgaact gagaataggt
2041 cttggatgtc aatgccatga gagtgtttgg agtcttgttt gaattgttta atgtctgttg
2101 gttccctgta aaaatgaata tactgaccat tattaggttg atagatagct atctccacgg
2161 ggtcttcagg tctcccttct atgtcaatcc atgtcttagc atttggatcc aattgcaaca
2221 tgctgtcttt gagttccatt gtctgagagt aggtcaaacc agcaggcatg ccttgggcct
2281 gagcgagtct gttggagtta cctttgtcag gctttgcatt ctgttgcaca tcaccactca
2341 gatcaacagt tgtgttatcc caagccctgc cgacgatcga tgttcttgat gctatgtaag
2401 gccaaccctc tccagaaaga catagtttgt agaggagatt ttcataaggg ttcctttccc
2461 ctggcgtgtc agagacaaac attcccaaag aacgcttgac tttcaaggca gccttcaaaa
2521 ttccttccaa attggatttt gttactttga tggtctccag catgtttccg ccgtctatta
2581 gacaagcacc agctttcacc gcagctgaca ggctaaaatt gtaccctgat atgtttatgg
2641 cacttttctt gggctcaatg atccccaaga ttgggtgggt ctgagagagt ttgtctaagt
2701 cagacatgtt tggatacttt gcagtgtaca caagccccaa gtctgacaac gattggatca
2761 catcattcag atctgcctgc ccttgtttgc acatgcaagc aatcgtcagg cttggcattg
2821 tcccaaactg attgtttaaa agctctgggt ttcgaacatc ccacactcta acaatgccat
2881 ctccgagagt gtttcctgcc cggaacccgc cacccattcc gaccatctgt agcaaaaccc
2941 tcctctgttc tagctgctga gctgttaggt tgcccatata gactccagca gcaagaggcc
3001 tctcacctct gatgactttt gctttgagtc tgtccaggtc ggcagcaagg acgaggaggt
3061 catcagaggt tagtgtcccc actctcaaaa cattcttctg ttggactgac tttaactcaa
3121 ctagattgtt cactgcctgg tttaggtccc tcaatctttt caggtcagag tcatccctct
3181 tctcctttct catcaacctt tgaacattgg caacttcaga gaagtccagc ccatgaagaa
3241 gtgcttgagc atccttgatg acttggatct ttatgttgga gcagtaccct gagagttctc
3301 tcctcaggct ctgtgtccac aagaaggact tcacctcctt tgaattggac attgttggag
3361 gcttttcggt gcagagctga ttccaaaggc gcaatcaatt agcctaggat ccactgtgc
//GenBank-Updates@genbank.bio.net (04/11/91)
LOCUS MOPGPCNC 3419 bp ss-RNA VRL 11-APR-1991
DEFINITION Mopeia virus glycoprotein (GPC) and nucleocapsid protein genes,
complete cds.
ACCESSION M33879
KEYWORDS glycoprotein; nucleocapsid protein; small RNA segment.
SOURCE Mopeia virus (strain 800150) isolated in Mozambique, cDNA to viral
RNA.
ORGANISM Mopeia virus
Viridae; ss-RNA enveloped viruses; Negative strand RNA viruses;
Arenaviridae.
REFERENCE 1 (bases 1 to 3419)
AUTHORS Wilson,S.M. and Clegg,J.C.
TITLE Sequence analysis of the S RNA of the African arenavirus mopeia: An
unusual secondary structure feature in the intergenic region
JOURNAL Virology 180, 543-552 (1991)
STANDARD full staff_review
COMMENT Draft entry and computer-readable sequence kindly submitted by
J.C.S.Clegg, 26-APR-1990.
Author address: J.C.S.Clegg
PHLS Centre for Applied Microbiology and Research
Porton Down, Salisbury SP4 OJG,
UNITED KINGDOM
FEATURES Location/Qualifiers
CDS 47..1516
/note="glycoprotein"
/codon_start=47
misc_structure 1529..1567
/note="intergenic region hairpin 1"
misc_structure 1592..1630
/note="intergenic region hairpin 2"
CDS complement(1640..3352)
/note="nucleocapsid protein"
/codon_start=3352
BASE COUNT 875 a 819 c 736 g 989 t
ORIGIN
1 gtggatccta ggctttttgg ttgcgcattt ctagagcatc tcggagatgg ggcagatagt
61 caccttcttt caagaggtgc cacacatcct tgaagaagtg atgaacattg tgctgatgac
121 cctctcaatc ttggccatcc taaagggcat ctacaatgtg atgacctgtg gaatcatcgg
181 tttgataaca tttttgtttt tgtgtgggag atcatgctca agcatctata aggacaacta
241 tgagttcttc tctctcgacc tcgacatgtc ttcactgaat gcaacgatgc ctctctcctg
301 ctcaaagaac aactcccatc actacatcca agttgggaat gagacaggcc tagagctgac
361 attgacaaac actagcataa ttaatcataa gttttgcaac ctgtctgatg ctcacaggag
421 gaatctttat gacaaagcac ttatgtcaat cttgacaaca ttccacctaa gcattccaga
481 ttttaaccaa tatgaggcaa tgtcatgtga ttttaacgga gggaagatct cagttcaata
541 caacctgtcc cactcaaatt atgtggatgc cggcaaccac tgtggcacta ttgcaaatgg
601 cattatggat gtttttagaa gaatgtattg gagcacctcc ctttcggttg cctctgacat
661 aagtgggact caatgcatac agaccgatta taagtatttg attattcaga acacatcatg
721 ggaggatcat tgcatgttct caagaccctc acccatggga tttttaagcc ttctgtcaca
781 gagaaccagg aatttctaca tctcaagaag acttttgggt ctttttacat ggactttgag
841 tgactcggaa gggaacgaca tgccaggtgg ttactgtctc acaaggtcta tgctaatagg
901 gcttgatctg aaatgctttg ggaacactgc cattgcgaag tgtaatcagg cacatgatga
961 agaattctgt gacatgctcc gcctttttga ttttaataaa caagcaatta gcaaactgag
1021 gtctgaagtt cagcagagca taaatttgat aaataaagct gtcaacgccc tcatcaatga
1081 tcaactggtc atgaggaacc atttgagaga tctaatgggt attccttatt gcaactactc
1141 taagttttgg tacttgaatg atactaggac agggagaaca tccctcccaa agtgttggct
1201 tgtgaccaat gggtcatacc taaatgaaac ccagttctca acagaaattg agcaagaagc
1261 caataacatg ttcactgaca tgttgaggaa ggagtatgag aaaaggcaga gcacaacacc
1321 tctggggtta gtagatcttt ttgttttctc cactagcttt tatttgatct ccgtgttcct
1381 ccacctaatc aaaattccaa cacatagaca cataaaaggc aagccttgcc cgaaaccaca
1441 cagactcaat cacatggcaa tctgttcctg tggcttctat aagcaaccag gtctccccac
1501 acaatggaaa aggtgaagaa caggggcacc cccgagaccc accgccttcg gcggtgggtc
1561 tcgggggcct ggagtgactg ttccttgatg gcctccacga cccaccgcca gaggcggtgg
1621 gtcgtggagg tgtcccttct tacaggacaa ctctgggagg acctgttcta aacaccaggt
1681 ctctactcaa gactggtctg ggggttggga tttgtggact ccctatgact gctgcttcaa
1741 acatgagaca atccagcaat gcacagtgtg gtgtcacttc ttctttgcca cctctcttct
1801 tcttttgcgt tacaatcccc gtatgcattc tacaaaggtg tttgtattca tcccagatct
1861 tatcctcaaa ttttcttgca tcgtctttct gcatggacac atcaatcagt tttatgtccc
1921 tcctgttctg ggagtcaaga agctttctga tgtcatcagc accttgacac gacaagacca
1981 tgttctttgg caggctctca attacagcac ttgtcaaccc cggctgaact gagaataggt
2041 cttggatgtc aatgccatga gagtgtttgg agtcttgttt gaattgttta atgtctgttg
2101 gttccctgta aaaatgaata tactgaccat tattaggttg atagatagct atctccacgg
2161 ggtcttcagg tctcccttct atgtcaatcc atgtcttagc atttggatcc aattgcaaca
2221 tgctgtcttt gagttccatt gtctgagagt aggtcaaacc agcaggcatg ccttgggcct
2281 gagcgagtct gttggagtta cctttgtcag gctttgcatt ctgttgcaca tcaccactca
2341 gatcaacagt tgtgttatcc caagccctgc cgacgatcga tgttcttgat gctatgtaag
2401 gccaaccctc tccagaaaga catagtttgt agaggagatt ttcataaggg ttcctttccc
2461 ctggcgtgtc agagacaaac attcccaaag aacgcttgac tttcaaggca gccttcaaaa
2521 ttccttccaa attggatttt gttactttga tggtctccag catgtttccg ccgtctatta
2581 gacaagcacc agctttcacc gcagctgaca ggctaaaatt gtaccctgat atgtttatgg
2641 cacttttctt gggctcaatg atccccaaga ttgggtgggt ctgagagagt ttgtctaagt
2701 cagacatgtt tggatacttt gcagtgtaca caagccccaa gtctgacaac gattggatca
2761 catcattcag atctgcctgc ccttgtttgc acatgcaagc aatcgtcagg cttggcattg
2821 tcccaaactg attgtttaaa agctctgggt ttcgaacatc ccacactcta acaatgccat
2881 ctccgagagt gtttcctgcc cggaacccgc cacccattcc gaccatctgt agcaaaaccc
2941 tcctctgttc tagctgctga gctgttaggt tgcccatata gactccagca gcaagaggcc
3001 tctcacctct gatgactttt gctttgagtc tgtccaggtc ggcagcaagg acgaggaggt
3061 catcagaggt tagtgtcccc actctcaaaa cattcttctg ttggactgac tttaactcaa
3121 ctagattgtt cactgcctgg tttaggtccc tcaatctttt caggtcagag tcatccctct
3181 tctcctttct catcaacctt tgaacattgg caacttcaga gaagtccagc ccatgaagaa
3241 gtgcttgagc atccttgatg acttggatct ttatgttgga gcagtaccct gagagttctc
3301 tcctcaggct ctgtgtccac aagaaggact tcacctcctt tgaattggac attgttggag
3361 gcttttcggt gcagagctga ttccaaaggc gcaatcaatt agcctaggat ccactgtgc
//