GenBank-Updates@genbank.bio.net (04/11/91)
LOCUS RATTCBC1 8040 bp ds-DNA ROD 11-APR-1991 DEFINITION Rat T-cell receptor beta-chain complex, segment 1. ACCESSION M63793 KEYWORDS T-cell receptor beta-chain. SEGMENT 1 of 3 SOURCE R.norvegicus DNA. ORGANISM Rattus norvegicus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (sites) AUTHORS Williams,C.B., Blankenhorn,E.P., Byrd,K., Levinson,G. and Gutman,G.A. TITLE Organization and nucleotide sequence of the rat T-cell receptor beta-chain complex JOURNAL J. Immunol. (1991) In press STANDARD full staff_review COMMENT Genomic sequence of the rat T-cell receptor beta chain constant region complex, including D-beta-1, J-beta-1.1 through 1.6, and the four exons of C-beta-1 (see RATTCB2A and RATTCB2B for the C-beta-2 regions). Ten cryptic rearrangement signals, described in reference [1], are noted, as well as the 3' end of an L1Rn LINE repetitive element. This sequence is approximately 2.8kb 5' of RATTCB2A. FEATURES Location/Qualifiers misc_feature 238..248 /product="D beta 1" /citation=J. Immunol. ??, ??-?? (1991) misc_feature 905..952 /product="J beta-1.1 (aa at 3)" /citation=J. Immunol. ??, ??-?? (1991) misc_signal 984..1011 /function="cryptic rearrangement signal #1" /citation=J. Immunol. ??, ??-?? (1991) misc_feature 1044..1091 /product="J beta-1.2 (aa at 3)" /citation=J. Immunol. ??, ??-?? (1991) misc_feature 1343..1392 /product="J beta-1.3 (aa at 2)" /citation=J. Immunol. ??, ??-?? (1991) misc_feature 1849..1900 /product="J beta-1.4 (aa at 3)" /citation=J. Immunol. ??, ??-?? (1991) misc_signal 1926..1952 /function="cryptic rearrangement signal #2" /citation=J. Immunol. ??, ??-?? (1991) misc_feature 2124..2173 /product="J beta-1.5 (aa at 2)" /citation=J. Immunol. ??, ??-?? (1991) misc_feature 2583..2653 /product="J beta-1.6 (aa at 2)" /citation=J. Immunol. ??, ??-?? (1991) misc_signal 2604..2631 /function="cryptic rearrangement signal #3" /citation=J. Immunol. ??, ??-?? (1991) misc_signal 2859..2887 /function="cryptic rearrangement signal #4 (13bp spacer)" /citation=J. Immunol. ??, ??-?? (1991) misc_signal 3221..3247 /function="crypic rearrangement signal #5" /citation=J. Immunol. ??, ??-?? (1991) misc_signal 4117..4144 /function="cryptic rearrangement signal #6" /citation=J. Immunol. ??, ??-?? (1991) exon 5057..5434 /product="C beta-1 exon 1" /citation=J. Immunol. ??, ??-?? (1991) exon 5868..5885 /product="C beta-1 exon 2" /citation=J. Immunol. ??, ??-?? (1991) exon 5980..6086 /product="C beta-1 exon 3" /citation=J. Immunol. ??, ??-?? (1991) exon 6403..6423 /product="C beta-1 exon 4" /citation=J. Immunol. ??, ??-?? (1991) misc_signal 6494..6522 /function="cryptic rearrangement signal #7" /citation=J. Immunol. ??, ??-?? (1991) misc_signal 6553..6579 /function="cryptic rearrangement signal #8" /citation=J. Immunol. ??, ??-?? (1991) polyA_signal 6623..6628 /citation=J. Immunol. ??, ??-?? (1991) misc_feature 6804..6894 /product="ID repetitive element (w/ 10bp direct repeats)" /citation=J. Immunol. ??, ??-?? (1991) misc_signal 7383..7410 /function="cryptic rearrangement signal #9" /citation=J. Immunol. ??, ??-?? (1991) misc_feature (7441.8040)..>7441 /product="L1Rn LINE repetitive element" /citation=J. Immunol. ??, ??-?? (1991) misc_signal 7452..7478 /function="cryptic rearrangement signal #10" /citation=J. Immunol. ??, ??-?? (1991) BASE COUNT 2327 a 1702 c 1817 g 2176 t 18 others ORIGIN 1 aaacagcatt tnaatgacat caggctccaa gaacaaagaa cattcaaagt agaacagggg 61 ttaaggagga aacccctgca ttagctcact tcttatcacc accttgcaca atggtggcga 121 tgtcatcttc cttatctttg actcccctca gaggagcagc ttctctggtg gtttcttcca 181 gccctcaagg ggtagaccta tgggagggtc ctttttgtat aaagctgtaa cattgtgggg 241 acagggggca cggtgattca attctatggg aaacctttac aaaaaccttt ctgtctgtcc 301 caaggcccac agtctgctac tcttcctctg ggtcacaaat ctaaatccat ttacatccaa 361 aatgcttcta cttcacctct gcttcctgcc aggccaagat tgtggagaag aatggggctg 421 tcccagagca gaaacctacg cagaatgatc acaagcataa gaagagaggc ctagtggcct 481 agaggcagaa gatgcaggaa gagcctcttc tcccaacttc cataaaacag accaccacca 541 tcagtggaca ggtgaaacag agatgaacag gtctacagct ttaaaaaaaa gccataaaga 601 tctcagctct agaggaatat caacatctct ctgggaatct gctctctgaa gggctacctc 661 acttcagtgg accttcagag agagaatata tatggtatgt tattcacaaa aggggatgta 721 ggtcccaatg gatggaatct accatgttct acattgctac aagtctaaca tcaaaatgtt 781 cttttgtgca atacttgtca tgcacacaag gctattattc ctcctagggt cctctcgaca 841 ctagctggga tgagtttctc gtcacatctt aagattattt tcctcctcac cctatagcac 901 tgtgcaaaca cagaagtctt ctttggtaaa ggaacgagac tgacagttgt aggtaagata 961 tctttaaggc aaatttccaa atctgtcttt ggacaaagcc tgtcctctgt gtccatatta 1021 gagagtatct gtattctgat gtgcaaacta tgactacacc tttggcccag ggaccaggct 1081 tttggtaata ggtaaggcct gagggtcttt gggtgtggga taaaaggtgt aatactgtcc 1141 aggaaataag agaaaggatc cagctcatgg ttccttcttg aggaagtcta tctcatgtct 1201 gggactacat tcaaaggagg ttgaatccac aaagttagac tgaatgtttg tgactgagtc 1261 ctcctagggt ggagggtagg aaagagaaaa gagaagggct cacagagagt gaagggtttt 1321 gaattggacc tgggaggctg tgttctggaa atgcgctcta ttttggtgaa ggaagccggc 1381 ttcttgtcgt aggtaagtta gggccaaatg gctgggtacc agatgaaatt tctctctgag 1441 gtgtccaggt tgcaaggtac ttctataaga aagaactaaa ttcctctgct catgcatgtg 1501 agaggggttg aatgcccatc tcccatattt tacatgctgg ttatatgaaa cctgggtacc 1561 ctgttaaatg ccggcaagct caactaggag tcagcctcgt gtactgttca tagtcctgct 1621 gtttgaccct cacatacagg cagaaaacag gctttgggga ggaggaggag gatgtacaga 1681 tcattaggaa aacggactgc caattatatt agttaatact gcacacctgt ctgtcctact 1741 ccctggggat aaaaccttcc tcaggaatga gggaagctaa ctggcagtgg gcacagggag 1801 gaaggacaga aagcaggagg aagttttaca atcaggcttt aatgttgtgt ttccaatgaa 1861 agattgtttt tcggccatgg aaccaagctg tctgtcctgg gtatgtaaaa attttctttc 1921 tcaggaaggt ttgttgtaag cctagaggtg tggggaactc ctcagacaag gaaaagacaa 1981 aaagacgcag cctgggctgt ggttcaaaga ggaagaaagg ctggtgaatg tgcctggacc 2041 cctggggatt ctgtgtagag tcctgcctca gggaagggcc ccatcagatc cttgggagtt 2101 tgccaccctt gtattgtact gtgtaacaac caggcccagt attttggaga ggggactcgg 2161 ctctctgttc taggtaagct atgggactaa agtggtggga gcaccgtccc ttggattcag 2221 ggtttctgca tccccagagc tgggtagaag gggctggggg attgagttat tccttttctt 2281 gctaggttct aaagggggcc tctgcctccc ttacgaggag atgaatcagt aactgtttct 2341 tttcccctga gtctctgcag tctaggagca gtctcctgcc ttctgacatt tctgtttgca 2401 tagatgtgct tcttctgagt cctttcctcc agtctccctc ctgtcacttg tctcatggca 2461 ttactggagt ctggaattct tcctgcaggc agagagacag tcatccagat ctcagggagc 2521 taagagtagc tctctagctt tgggaccgcg ggtaggtttt accaaggcca ccagcaactg 2581 tgtttctata attcgcccct ctactttgca gcaggcaccc ggctcactgt gacaggtatg 2641 ggggttccat tcctgactgg aggggttatg cctgtgttgg atcaacatgg tctgggaaag 2701 gaacttaggt ataagataag acagagtcat cccttcccat ttagaaccct ctactcttct 2761 acttccccaa gcctggtagc tttctcttct ctgggtttgt tttctctttg tggtctcgga 2821 aagccttgct tcggagcttt gagtcttctt tctcttgttt ttattctttg gactactgtc 2881 gtctgtgcct tccgagcgga tgcattactt cgctttctct ctatagcctc atctccactc 2941 tttccattct ctttcccctt ctgcactgtt gggttggttt ggtacataga actctgtctt 3001 atttaaaata ttgacactga cctcctgtgc agacttctgc tgcctccttc atcttctgcc 3061 tctatcggtt tctgaggaca catgtctgtc ttccttgtgt gatagaaagg gctggagggc 3121 agaggggatc aggtcttggt ggtatcagag tgacctgggc actaatcctg agcaatggca 3181 taagtctgtc atagcactac aggaactgta gctgcctaca gaactttgga gtatattata 3241 ctccgtggat atctcagggt tagatatgaa aaagcttata actagaaagt gatatattag 3301 caataaatta tgtatgatga agagaaaata aaggtcttga gactccaggt ctgtcttgga 3361 ataataagct aatgaaaacc taaaataagc aatatcatac ttgggaggaa gcagaaaggc 3421 taacaggcat ggggagtggg taggaaagat atgaggtctg gaaaatacaa gaaaaggtgg 3481 aagaatgtaa cacctcggtc ctcccaggat tggtagcttc catagatatt gtctagtaga 3541 caggatccat gccatgaaaa ttaaaggaaa ctactaagca ctggtttcaa aggccnnnng 3601 ctcaaagnnn nggaaaatgc atagagtgat atttttnnnn gngngaagtt tcaggcaatc 3661 ccagactcta taagacacac aaaaaaaaaa tagaaaggac tgttttatgt ttaaaattat 3721 tgatnttgtt tgatttttac ttttgagaac ttcataaata agtagtgatt ctacatcctt 3781 cttcctcctt tcnctctctc ccaattcttt taaaggattc aaaggtcaca ttatgtgact 3841 acatttattt caattattga ttatccttca agccactgtt tgtctttctc caaactcatt 3901 tctcaatttc ccggacaagt cctcaacttc agacaaagaa gaaagatctt atgttatcct 3961 gtttgtacac cagaacctta ctttaaggtc agaacagagc caaagaggaa gaccattgaa 4021 ctctacatca agggaggagg cttggaggac atatgtggat tttgcatcta ttgtgtcttg 4081 gggcaggggt cattcatttc aataatccta ggagtatttt tctgtcctgt cttctaagca 4141 tgtggctgga tccaggcctt tctggtggag acctgcttct gaaatgaccc ttgtacttta 4201 ttatttgttt acaggaattt ttcactacat taaagaatac aatgttaggt tgtgaacntt 4261 gaattctgaa actcaccagg gagacttgtt gagcactgaa aaaataaaag ttcaacctat 4321 gaatactatc ttccatggga ttgcagcttt cctatgcaag ccaccacagc tttctcacat 4381 ctcagtgtag aagtggatgt ggaacatcgg ataggctaac agccagagac aagctggaac 4441 ctcaaagcaa gttgcgtgca gtgggggagg aggttgcatt gagcaagtat tcagaaactc 4501 agagatgtct ctggatgttg tgtggaaagt gtcgatttta ggtaacgaaa gtttatacta 4561 tatagaatga cctaaataca ttgatatatc cactttaccc caaaaagaaa aataataata 4621 aggagaaaaa aaaccttagt tcttaggatc atgacattac tatgacatct ttgtcttaaa 4681 attcaatatc actcaaagcc tctgtttcga atagccatgc atagattccg gtttcttaaa 4741 aactactggg tgtattcttt ttaaccagtg atcagtgttc aagtacatga gtcattacaa 4801 gaaagtgaaa aatccaaggt accattccac cataggaaag tgtggggaga gagtaaacaa 4861 agcatatact tagaacaatc tataaagaag agggaatgcc aagggagacc agaaacagaa 4921 ttggacaagg acaaaaaaca agcagaacct gctacaacat agttgtactt tataatgacc 4981 atttccagcc ctctcttaca aatccaagct tggttcagac agctctcaga catctcctgt 5041 tctcttcatt tttcagagga tctgaaaacg gtgactccac ccaaggtctc cttgtttgag 5101 ccatcagaag cagagatcgc agacaaacaa aaggctaccc tcgtgtgctt ggccaggggc 5161 ttcttccctg accatgtgga gctgagctgg tgggtgaatg ggaaggagat ccgcaatggg 5221 gtcagcacag accctcaggc ctacaaggaa agcaacaaca tcacctactg cctgagcagc 5281 cgcctgaggg tttctgctcc cttctggcac aatcctcgca accacttccg ctgccaagtg 5341 cagttctatg ggcttacaga ggaagacaac tggtcagagg actcacccaa acctgtcaca 5401 cagaacatca gtgcggaggc ctggggccga gcaggtaagg gggccttggg gagctggtaa 5461 gaaaatgaca tcagtagtgc caaagaaaaa cggaaagatg caggtgaaaa gccaggaagt 5521 caggatacag aaaatacact ggaaagtgat aaaaagccta ccaagaagat aaactagaca 5581 actgtgtata attctcactc cagatcctca ttctgtcagc cttacatgta agatctccag 5641 tctatgccac ttgtgcagct cagtatccga atcattagct ttggtgccta tgccatgggt 5701 tttaagaaca cttggtacaa cagaagaggg atgcttctgg gacctcctgg ggggaggggt 5761 aatctgggcc tatcaaacta tgctagctcc taggatgact taattttcaa tcttcttaat 5821 aaaaaggtgt ctcatccatt ttcctctctc tctttctatt ctttcagatt gtaggattac 5881 ctcaggtaag ccacttaact ctttcttcac ctctcatgat cttgactgta gaactagcta 5941 cctggccaac ggacttacct gctctccttt tgtcaacagc atcctatcaa caaggggtct 6001 tgtctgccac catcctttat gagatcctga taggaaaagc caccctgtat gctgtgcttg 6061 tcagtacgct ggtagtgatg actatggtaa ggaacgagca gatggacctt acaggggagg 6121 tgacacatgg aacacaagac acttacatcc aggggcttaa gggctcttcc aggattagat 6181 ggaagcagta gagaaagctc tgctcccatg ccattaagga caagaagaaa tttcaaagaa 6241 ttttagtgaa tgatctacag agaggacatg ctatgataat tcaaaatgcc caagggatgt 6301 tttagtagct ctataatttg tcagaacaat gggccttcct acattctttc aagccccact 6361 atgcatggcc attggaaaac ctaaaatgct tctcatccgc aggtcaaaag aaagagttcc 6421 tgaagccaga cctgaaggtg aatccaagag cttacaaccc attgtggtgt tgatacagat 6481 tttcttctac tggcgcttct gaagagccta ttctcctttg tggatcccaa agtctgccta 6541 gtcatgtata tttgtgtttg tatgtttgaa atccttgtgg cctggagagt gcctagcaca 6601 cttacaatta gtaaccataa ccaataaaac atgttctaga atggcctgac tctctctggt 6661 gtgtgtagat atctttattt cttttctctc cccaaactcc ttgatcaatt tatgattaga 6721 aaagaagaga tattcaagaa aaatgatgcc catccagggt aagagaagtg aaggccccac 6781 cctcaaatta acagatgatg attggggttg gggatttagg tcagtgatag agcgcttgcc 6841 tagcaagcgc aaggccctgg gtttggtccc ctgctctgga aaaaaaaaaa aaaagatgat 6901 gattaagttt ggaaggtagt gacagaaact aaaaattctc aagagagaag gacagaggtc 6961 ctgagtacag gaagtctctt aacttcaaaa ccaaaccaac taaacaaaca aaagatgagt 7021 gctctggggg acagcagcta cagattacac aaatgtatcc acctgcaact tgtcatgccc 7081 ctgtggctaa caaggcttgg ttccatgtgt gtcacctatc ttcctttagg ccttttactg 7141 aacacatgtg ttcattcacc aagcagcttt cctagatgat tacccatgac aatgcactga 7201 cttggaaaac tatattccaa tggaagatgt gtctttcact taaggtacaa atcgttgtta 7261 aattataccc cggtgaaatg gagggatgta aactatatca cacaagcgtg cctagttgta 7321 cagaacttag agcttcctat aagcaagagc aatacctatt tctacatcta gaaagtctgc 7381 atatctcttg atctcgctgc agccattgtg gagtagttgc gatccttaag atggcataaa 7441 taaaactgca aagcttctgt aaggcaaagg acactgtggt taggacaaaa cggcaaccaa 7501 cagattggga aaagatcttt accaatccta taacagatag aggccttata tccaaaatat 7561 acaaagaact caagaagtta gaccgcaggg aaacaaataa ccctattaaa aaatggggtt 7621 cagagctaaa caaagaattc acagctgagg aatgccgaat ggctgagaaa cacctaaaga 7681 aatgttcaac atctttagtc ataagggaaa tgcaaatcaa aacaaccctg agatttcacc 7741 tcacaccagt gagaatggct aagatcaaaa actcaggtga cagcagatgc tggcgaggat 7801 gtggagaaag aggaacactc ctccattgtt ggtgggattg cagactggta aaaccattct 7861 ggaaatcagt ctggaggttc ctcagaaaat tggacattga actgcctgag gatccagcca 7921 tacctctctt gggcatatac ccaaaagatg cctcaacata taaaagagac acgtgctcca 7981 ctatgttcat cgcagcctta tttataatag ccagaaactg gaaagaaccc agatgccccc //