GenBank-Updates@genbank.bio.net (04/11/91)
LOCUS RATTCBC2 3203 bp ds-DNA ROD 11-APR-1991 DEFINITION Rat T-cell receptor beta-chain, segment 2. ACCESSION M63794 KEYWORDS T-cell receptor beta chain. SEGMENT 2 of 3 SOURCE R.norvegicus DNA. ORGANISM Rattus norvegicus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (sites) AUTHORS Williams,C.B., Blankenhorn,E.P., Byrd,K., Levinson,G. and Gutman,G.A. TITLE Organization and nucleotide sequence of the rat T-cell receptor beta-chain complex JOURNAL J. Immunol. (1991) In press STANDARD full staff_review COMMENT Genomic sequence of the rat T-cell receptor beta chain constant region complex, including D-beta-2, and J-beta-2.1 through 2.6. A cryptic rearrangement signal described in reference [1] is noted. This sequence is approximately 2.8kb 3' of RATTCBC1 (containing the C-beta-1 D and J segments as well as the C-region exons), and 500bp 5' of RATTCBC2A (containing the C-beta-2 constant region exons). FEATURES Location/Qualifiers misc_feature 231..245 /product="D beta-2 segment" /citation=J. Immunol. ??, ??-?? (1991) misc_feature 824..873 /product="J beta-2.1 (aa at 2)" /citation=J. Immunol. ??, ??-?? (1991) misc_feature 1027..1077 /product="J beta-2.2 (aa at 3)" /citation=J. Immunol. ??, ??-?? (1991) misc_signal 1046..1073 /function="cryptic rearrangement signal #11" /citation=J. Immunol. ??, ??-?? (1991) misc_feature 1278..1326 /product="J beta-2.3 (aa at 1)" /citation=J. Immunol. ??, ??-?? (1991) misc_feature 1429..1477 /product="J beta-2.4 (aa at 1)" /citation=J. Immunol. ??, ??-?? (1991) misc_feature 1518..1561 /product="pseudo-J beta-2.5" /citation=J. Immunol. ??, ??-?? (1991) misc_feature 1858..1904 /product="J beta-2.6 (aa at 2)" /citation=J. Immunol. ??, ??-?? (1991) BASE COUNT 841 a 709 c 838 g 813 t 2 others ORIGIN 1 gagagaacat gttcagaaca ggggctccct ccctgcatca acaacaccac catcagtccc 61 aagaacatct ccaagctcct cccctcctaa gatttaccca gcttgagatt ttncccagcc 121 cctctcagtc agacaaacct ctctgccacc tggtctccct gcccctgccc aggcactggg 181 tagggcacct gcagggaaga aacttttttg tatcatggtg taacattgtg gggactgggg 241 ggggccacaa tgattcaact ggaagaggtg cttttacaaa aagctctaac ccccaaaaca 301 ccaactctct gtccaagaaa tgcatttaac atgtgaggag gagtctgtgt gagtggacct 361 acaaggtctt ctaatagcta agcattttct tgtcctagaa agcttcccat gagtctcaaa 421 gggaagtggg ttcacattca gccctaatca tgactcttac catcaacaaa gtatctgtac 481 atgcagggta aattgagaac ttattaaaaa gtattgagta aataaatata ccctttgttg 541 gaaagactgt acaagtcctt tctcattgga ggctactcag acacagcagg tagccctcag 601 atttcaaagt cactttgcta acccctgagt gaattgtatg gatattcgtt cccaagccaa 661 aggttgtatc tcttcttcaa tttgagatct taagataggc ctcatgcaag gtcaagattg 721 cattacccat tctggaggta gatggagaat gtgagtaacc ccgggtctat gctgaggaag 781 gtgaggaagc aggaagaatt cgtggcagcc cttttctgct gtgttcctat gctgaacagt 841 tcttcggatc agggacacga ctcacggtcc taggtaagaa aacagaggcc acacaggtag 901 gggagaaggt gggacagtca cccacaagga cccctggagc agaaagcctt agcagagtct 961 acctttgact atctaaggcc ctgtatcagg gaagaggagg tttgtgccac catccccagg 1021 actgtgcaaa caccgggcag ctatactttg gtgaaggctc aaagctgaca gtgctgggta 1081 aggagggctg aactgtactg tgggagtaag agggacagag caggactatt cagtgtcctc 1141 ttggtctgag ctaacctgcc tgggcagaag gatttctgta ttggatactg ggaacagtaa 1201 agcactcatg gtttggggtt gggacagcag gaggcagcgg cagcactgag tttttacttc 1261 tgagcctgaa ggctgtgact acagacaaga tatattttgg ctcaggaacc agactgaccg 1321 ttctcggtaa gttgggagct agtcgtgaag gggagggagc atttccttga agggactccc 1381 aggtaaaaat agccagggct agtttttntc ctgtgctaag aggctgtgag tcaaaacacc 1441 ttgttcttcg gtgcaggcac ccgactgtcg gtgctaggta agctggtaca gtttttgtgt 1501 tggtttctgg ggctgtgaac caagataccc agtactttgg accaggcact cgcctcctta 1561 ggtgagctgg ggccccacgc gcgcgttggc agcgggatat ggctgcagtg ggctcgggtc 1621 ccttggctgg gtttctcttg gagttcacag ggttgtgcag cccttgccct gggttgaacc 1681 tcccgtgtga gcttcttagc aattgcagcg gcaagttctg gggctgctgg cgtctttgcc 1741 cagggttctc aggcccttcg cgccgggaga gggaggctga atgcagggag attgtcccta 1801 aactggggaa tacctcgctg agccccgcgg gtttgtgtgt ggggtcgcgc ctccgtgctc 1861 ctatgagcag tatttcggtc ccggcaccaa gctcacggtt ttaggtaaga tttatatctt 1921 tccccgcccc ccccacccgc cctaattcct gggtccctgg aggaaattgg gattgagcgg 1981 gttaagtctc ccgggggaat cggtaatggg agacagctct caacttcgcc ttttctggga 2041 gagctggatg agacagggta ttgggtgcca aagcatttct cttgcaagcc aggacaaggt 2101 aagtttcttt ctcttttctc tgaggtatgc atgcgctggg tgggcggtgg agaaaaagga 2161 ttattcaaga ctctggaatc aaacttggtt ttgaaagtaa aggcaggtaa caaagaacta 2221 aaaggcagag aaaggcgggg agctttccca gaggtagagt tctcactggc aaaagttgtc 2281 caaaagagag agggattttt ttttttttaa aggggaagga gtctagcaat aaaccaagga 2341 caaacctaaa ctagaacaga agaatcaaaa gcctggtggt gttcgcatgt gattaaattc 2401 catctactgc tttaccttgg gatcccttga agcaccatgg aaacccagta tccacacatt 2461 ctcatgactg gtcagcccaa aggccggggg aacttagtca ctggggtctg tttatcctca 2521 ggttattcgc ctgactcctg acctaaaatc tgcactgttc acaccgtgaa ttccaggcta 2581 gacagacagg ctatatcacg aatggggttc gttgatcaaa ggcatacatt aaactacaga 2641 catttagctt ggggaaaaaa atgcttgaaa aaccttaggg tcccagtatt agaatcgacc 2701 ttaaatatca ccttgacagt gagggccaag gttataaaaa aagaaataat tcacagcttg 2761 gttatgttaa cctgtattat ttggtaacca tagtaacagt agacatcatt tgtgattgga 2821 acattaagtt ggatccaagg gaactcagcc atgttaaatt gtgtctaagg gaaatgttgg 2881 gtccctgtag tcacgtggga taaagaaaag agacagactt tatagccaga tgaggctggt 2941 ttccagtcct ggttctttga tgataaggta agcttaggcc tgttagtgtg tgaacctatt 3001 caatggagac agatagtggg gcagtttgga aaagggaaga gaagttttat aattttactc 3061 atagctagtc cagtttgcaa gcaaatcaca taccaggagc agctcactta tgcacaattc 3121 actttcatag gcaattatac ctcgaaagaa ccctcatgaa ctcacataca tggatattta 3181 gctgccccca gtctccctgt gga //