GenBank-Updates@genbank.bio.net (04/11/91)
LOCUS RATTCBC3 2841 bp ds-DNA ROD 11-APR-1991 DEFINITION Rat T-cell receptor beta-chain complex, segment 3. ACCESSION M63795 KEYWORDS T-cell receptor beta-chain. SEGMENT 3 of 3 SOURCE R.norvegicus DNA. ORGANISM Rattus norvegicus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (sites) AUTHORS Williams,C.B., Blankenhorn,E.P., Byrd,K., Levinson,G. and Gutman,G.A. TITLE Organization and nucleotide sequence of the rat T-cell receptor beta-chain complex JOURNAL J. Immunol. (1991) In press STANDARD full staff_review COMMENT Genomic sequence of the rat T-cell receptor beta chain constant region complex, including the four exons of C-beta-2 and a portion of the 3'UTR. An Alu type 2 repeat and a cryptic rearrangement signal, both described in reference [1], are noted. This sequence is approximately 500bp 3' of RATTCBC2A (containing the D and J-segments of C-beta-2). FEATURES Location/Qualifiers misc_feature 765..975 /product="Alu Type 2 repeat (w/ 16bp direct repeats)" /citation=J. Immunol. ??, ??-?? (1991) misc_signal 1008..1035 /function="cryptic rearrangement signal #12" /citation=J. Immunol. ??, ??-?? (1991) exon 1294..1671 /product="C beta-2 exon 1" /citation=J. Immunol. ??, ??-?? (1991) exon 2162..2179 /product="C beta-2 exon 2" /citation=J. Immunol. ??, ??-?? (1991) exon 2323..2429 /product="C beta-2 exon 3" /citation=J. Immunol. ??, ??-?? (1991) exon 2714..2734 /product="C beta-2 exon 4" /citation=J. Immunol. ??, ??-?? (1991) 3'UTR (2735.2841)..>2735 /citation=J. Immunol. ??, ??-?? (1991) BASE COUNT 859 a 619 c 626 g 734 t 3 others ORIGIN 1 gacggcagag taagacaacc cctccttcca aataaaagaa agaaaagaaa aatgtagaca 61 actcctacta aaaagaaaca gatttccaga gcgattgctg cagagcttgg agcactaagc 121 ctgtgacctt gggtaagaat tgtgcaggat ggataccttt gtttggagcc ctggaataag 181 ataatatcca cagaattatg agaaagggtt aaaataaagt ttccgcatta tcaagaaggt 241 cttgggttgc tagcacaaat atatctatct cttcattttc agcaaatcac ttggaagcaa 301 aggacagaca gaaaagtgca aataactggg gatagttaga ggcagagaag ttgatgagat 361 tactctgcaa aattgagtaa accttatata ttgtgaatac atggtagacc gggatgtcta 421 cacaggcatg ggtgaaaata aaccatctat tgaagtctga ggaaagcttt ctcatgccaa 481 atgtttatct gaacttgaat taccctttaa tcctggtccc ttagctatga cacagataac 541 ttagctgtgg caggatggtc caaatcctta tgtctcttct tcaagtcagt gttgcacatt 601 tcgctttgca agcagaaaag aaattggtac agaagcatta aagaggctct cccatggtca 661 cacaggcatg gaaggtgatt gctcagactc gggccctgta tgtcttattt ctgtggccaa 721 ctccaactaa agacgtgcta aatataataa gaaataaact tctcgggctg gaaagatggt 781 tcagaggtta agagcactac ctgctgttcc agaggtcctg agtgcaattc ccagcaaccc 841 gatggtggct cacaaccatc catgctgaga tccgatgccc tcttctgacc tgcaggccta 901 catgtaggca gaaagctgta tgatgtatac ataataaata aatattcaaa aaggagaaaa 961 tttaaaaaga aagaaaagaa ataaacttct cttgagaaag gaggattaaa actgtgtcaa 1021 tacagagcca ttgtgcagaa cattgggcca gacatttaca gtatgtgttt atgaaaatgg 1081 aaggatagga aaggttgatg tctactggat gaaataaatg accaacaagg taaaagatta 1141 atgccaaaga gaaaaggaat agtggttcca aagccaacag gactggcttt tcagaaactc 1201 tcttagccct tagcctttcc agatacaaac aatttctacc tgatccaggt agtcatcagc 1261 aaaatgctaa tttcacccct ctttactttc cagaggatct gaaaacggtg actccaccca 1321 aggtctcctt gtttgagcca tcagaagcag agatcacaga caaacaaaag gctacccttg 1381 tgtgcttggc caggggcttc ttccctgacc atgtggagct gagctggtgg gtgaatggga 1441 aggagatccg caatggggtc agcacagacc ctcaggccta caaggaaagc aacaacatca 1501 cctactgcct gagcagccgc ctgagggttt ctgctccctt ctggcacaat cctcgcaacc 1561 acttccgctg ccaagtgcag ttctatgggc ttacagagga agacaactgg tcagaggact 1621 cacccaaacc tgtcacacag aacatcagtg cggaggcctg gggccgagca ggtaaatggc 1681 acctggagag ctgacaagaa aactaaacac gactagtact tcaaaaatat gaaatgatct 1741 atgtagaagc aaagaataga cccaggaaaa agcccaaatg gtgggacaga taatcaagga 1801 catggtgtca gaaaaccata gcatatgctt tcttccaagg aatacttaaa ctcaaggggc 1861 agttcaggcc aattggcttc ccagttcttt agtttctctg agctgtgttt atgagttcct 1921 cacagaccct catagcctag tatttnnnag tccatcctga tgtagatttt aaggtctcgg 1981 tgacattgcc tggcaccatc agaagacagt gtgaggagta tcagcggaga gtgcttatgc 2041 catctgacgt gcatctgtct gtggccttaa cattcacctt taaattttgt tgttgggtgt 2101 agaacatccc caagaagtgc cattctttca cccatttttt cctccctctc ttttctttca 2161 gactgtggaa tcacctcagg tgagtaaatc tctcaacttt ctctaagtct tctgtggtct 2221 tggctttgaa aacaggacac aaaattctac aaacatggag tttggggctg cccaaaggaa 2281 cctgtttata agcacctact cactctcctt tcctattaac agcatcctat catcaagggg 2341 ttctgtctgc caccatcctc tatgagatcc tactggggaa ggccacgttg tatgctgtgc 2401 tagtcagtgc cctggtgctg atggccatgg taagaatggt aggatgggac aaacggttgg 2461 aggtatagac tgcagtgtat ggaatgtatg gtgatcttag aggaggaccc aaccctgata 2521 tccagtcatg tcaaaaatac cataaggaac acagtacaaa gtaaaactgg aggaatgctt 2581 atgtttgtac tcctggagga tgaggagaac caaggagctc tcttcaagat catacttgag 2641 aatctatttc ctgtataacc cctccctctg ctccatggat tctggaggtt taacaatgtc 2701 ttttctttct caggtcaaga aaaaaaattc ctgagacaaa ctttatgcat cctgagctgt 2761 tctttaccct ggccatggat tttcccgcac cttctccaat ccctgttcct aaggacttgt 2821 ctcctctccc tccatggaaa t //