GenBank-Updates@genbank.bio.net (04/16/91)
LOCUS NCVCG 4754 bp ds-DNA VRL 16-APR-1991
DEFINITION Polyomavirus Kilham strain complete genome.
ACCESSION M55904
KEYWORDS complete genome.
SOURCE Kilham rat virus DNA.
ORGANISM Kilham rat virus
Viridae; Nonclassified viruses.
REFERENCE 1 (bases 1 to 4754)
AUTHORS Mayer,M. and Doerries,K.
TITLE Nucleotide sequence and genome organization of the murine
polyomavirus, Kilham strain
JOURNAL Virology 181, 469-480 (1991)
STANDARD simple staff_entry
FEATURES Location/Qualifiers
TATA_signal complement(22..28)
TATA_signal 139..145
TATA_signal complement(162..167)
TATA_signal 172..177
rep_origin 215..326
TATA_signal 227..231
CDS 340..2547
/pseudo
/note="TAg ORF; non-structural protein"
/codon_start=340
CDS 340..816
/note="tAg ORF; non-structural protein"
/codon_start=340
intron 574..834
/note="TAg"
misc_feature 574..582
/note="splice donor site"
misc_feature 834..844
/note="splice acceptor site"
polyA_signal 2547..2552
polyA_signal complement(2560..2565)
CDS complement(2579..3700)
/note="putative"
/product="capsid protein VP1"
/codon_start=3700
polyA_signal 2588..2593
CDS complement(3603..4628)
/note="putative"
/product="capsid protein VP2"
/codon_start=4628
CDS complement(3603..4271)
/note="putative"
/product="capsid protein VP3"
/codon_start=4271
misc_feature complement(4010..4020)
/note="splice acceptor site"
misc_feature complement(4404..4414)
/note="splice acceptor site"
TATA_signal complement(4644..4650)
misc_feature complement(4654..4663)
/note="splice donor site"
TATA_signal complement(4668..4673)
TATA_signal 4670..4675
BASE COUNT 1452 a 949 c 994 g 1359 t
ORIGIN
1 gagatcttgg agagttcctg tttacataca ttgaaccgcc cccattgtct tggcttcctg
61 ccattgccgt gtccgggcaa tcagccattg cggtatccgg gcaatctgcc cggtcttggc
121 aaggcgcccg ggagcactta tgaataacgc ccttcctcct cttaatagca ataaattctt
181 gagcagcagc caacacagtt taagcagact catttttttc caagggtata agaggctgga
241 ggcctttgcc cctaccttca ctgcagaaag agagaggctt ttgagaggct tttcagaggc
301 tttccgaggc tttaaccttt gcctgaaaaa aaaacaaaaa tggatcatca gttaacaaga
361 gaagaaagcc aaaggcttat gcacctttta aaactcccta tggagcaata tgggaatttc
421 cctttaatga gaaaggcttt tctaagagcc tgcaaaattg tgcatccaga taagggagga
481 agcgatgaat tgtctcaaga attgatcagt ctctatagaa gacttgaaga atcccttcct
541 tgcctgagta ctcaggattt cattgaaact gataaggttt gtctaattga gaaaattgat
601 tatcttacag attggataaa ctgcaatttt gagaattgca ataaatgcct ttattgccgc
661 ctatggaata accataaaag tgatccgcct ttcccaaaag tttggggata ttgcctctgc
721 tacaaatgct atataatttg gtttggcctg gaaccatgtc attttgcgtt tcaaagttgg
781 atgcagataa ttgctttaac acctttctgt gcttaaatat ttaaggtaag ttttattttg
841 cagattcctt catatggaac ccctgaatgg gatgaatggt ggaaagaatt taataaagat
901 tttgatctct tttgtaatga agcctttgac agatcggatg atgagcaaga accacagccc
961 gacgactcag cacccatcat cctctcgccc acctaccccg ccagatcaca ggctacccca
1021 cctaaaaaaa aggcaaaaat ggattctcca aatgatatgc ctgctgactt aatggaatac
1081 ctaagctgtg ctatcctttc aaataagaca ttaccttgct ttctgattta caccacctta
1141 gaaaaagtgg agttgcttta taataaatta tctgaggaag tattaagtcc tagatttaat
1201 caggtagacc ataaatatgg aaggaaatac gttccaattt ttatcataac tggaactaaa
1261 cacagagtta gcgcagtgtt taattattgt gcaacatatt gtagtgtttc ttttatagtt
1321 gttaaaggtg taattaagga atatccatta tattgtcatt tatgtgtaga accctattct
1381 gtcctgcaag agagtattga agagttaaat tcagaattct ttgatgcccc agaggatgcc
1441 gcaaaaaatg tgaattgggt agcaatatct gaatatgcgc taaaaatcaa ttgtgatgat
1501 atttacctat taatggggtt gtataaagag ttccaaagtc cagttcccaa ctgctcaaaa
1561 tgcgagaata gaatgcttac aaatcacttt aaattccaca aggaacatca tgaaaatgcc
1621 ttttatttgc agcttgtaga aaaccagaaa actatatgcc agcaggcggt agatggtgta
1681 atagcaacaa agacggtaga tatggcacaa atgacaagaa atgaacagtt agccgctagg
1741 tttgataaat tatttgaaag attggaagta atattgagtg cgcaatcctc ctatacaatt
1801 agcatgttta tggcaggcat tgtttggttt gaaaatcttt ttccaggcca gtcatttaaa
1861 gacctccttt tggaactcct tgaatgtatg gtttcaaaca tccctaagag aagatattgg
1921 ctatttaccg gtcctgttaa tactggtaaa acaaccttag cagcagctgt cctagatctt
1981 ggaggtacga tatatatatc cgattgttac ctaattgagc tggaagttgc gaatagtcaa
2041 attcatggtt gtgttgaagt gttggcagag aaagtgaaaa taagattgcc gcccgggcaa
2101 ggaataaata atcttgataa tcttagagat catttagatg gagctgtaaa ggtgaactta
2161 gaaaagaaac atttgaataa gaaaacccag atatttcctc ctggaattgt tacttcaaat
2221 gaatatttca ttccctttac tttaagagtc agattttgca agaaacttgt ctttaaattt
2281 tctaaatacc aatatctatc attgaaaaag accgaatgtc ttggtagata tagaattcta
2341 caaaatggat gtacccttct gcttctcctc atttatcatt gtgatcttga tgactttgct
2401 gaaagcatac aagggaaggt tagagcctgg aaagaaagag ttaactctga aatttctgtt
2461 tcaacatatt tggaaatgag acaatgttgt ctagagggaa ggtattctgt ctgcacgaaa
2521 tactcaaatg ccaacacagc acaatgaata aagtaaatgt ttattaacac tgcttgcatc
2581 acaacacaat aaaagcttgc atgacaaaaa aatacaagtg tttatgcctc attgctggga
2641 atatcaggga cagtaacctt cctggccaaa ttatccggta tctgatcatg tcaggatctc
2701 caggtagacg ttccactcca tcataaatcc tgacctcctc aacctggagc atccatgaat
2761 ttaggggcat catctcactg gaaaaggtat tcagcaatga gctcacaggg tagggatttg
2821 cacagccttt tcttaagtgt atgctgaaat atctaggcaa gccacgaagg tgcattttgt
2881 tattctgctg tgttctgaag ccaacaatgt cagcagaagc aaggtacaag ccatctccct
2941 tacaaagcgg ccccactcca ttttcattca aaaggattgt ggtagtagtg ttagtaattt
3001 gcaggacagg tggggtttga aggccaccag tgtaggttcc aaagtatctt gtattctcat
3061 ttttggcagg gtcggggctc catgcttcaa ttgggaactt tccatcagcg gttagcttag
3121 cttttaattt agggtcaagg acctgagcag ctttaggagc tgcttgaagg gcagccacac
3181 cagcagggta attgcacctg tagtttttcc acaaccattg caaatcaagt gcttcacctc
3241 caacagagaa gaaatggaaa tttagacctt gaacaggaaa gcctgcacct tcattatcat
3301 acaacctttt tacagcagag tgacaatttg ttagagagga aaccccgaca acctctgtct
3361 tacaacttat agcttcccac ataagtattg tatcacatgt catgtcctca ttcaacattg
3421 ggagggaaat tttggccata ctatagcatg gcagttcttt aatgcggggc atgtcctgcg
3481 tgtagtcagc tgaaacagtg atattgtcac taaagccata gaaatcagaa tcaacaggct
3541 tccccatgcg aggattgagg aaggcctcaa tttgggttat actatcagga ccagttctga
3601 catcaagcac ttggattcct ccaacaacta ctgagttttg ggacttctga gggcttaggc
3661 cttggttttg cgacgttcgc tttttgactg tgggagccat cttcctctgc ctctaattct
3721 tccaaagtat ctttccaact gggagtgaga tctccgtaga gccctaaaag taaagggagc
3781 atccagtcag gggctgatct ttgattagct cctccaggag gatcaacctt agttacatag
3841 gtagctgaga cctgaccttt gagttgaggg gcatcatata aatcaatact gtaaggctgt
3901 ggatggccta aattcttgct aattgtctct gttgaattgg agacaggcct aactgggaat
3961 aataactttc tagtccatga tacaaagaag ttgaatagac ctgaaacagc ccagcgagca
4021 ttttcaaagt actgtgataa tgtctcacta agagaagtaa cacttctcat agcaagttct
4081 cttccagtct ccatttgctg ttcaataaag ttgatccctg ctgcctgaac tcgttcccaa
4141 aaatatcttc ctacagctct ataaaggtct gcggcccagt tggctgggtc aatgtagttc
4201 acaaatcttg cgaatggtag ggctcctggg aacagtatgt caagatctgg gtaccagatt
4261 tgaaggacca tattgagatc agcaactgga gttctgtaat cccaataata agggtaaagg
4321 gcagcggaaa cggctgctcc tacagttaag gccccagtag cagtgaattc ggtagcagca
4381 agagcgccca aagcctgtgg gaaattagga aacagtgagg ttaaagccgc aaaagcttga
4441 ggagttactt ctacagctgc taaggcttct gcttctgtta aacctccata aactacaaga
4501 ttatttatgt gcgattgaag aagttcagct gttgtcaagg cctctccgct aagaatactc
4561 tctacagaaa gtccggtaat agaggcaagg tcgaatactt cagcaagtac agcaagaaaa
4621 gcgcccatta cctagaaagc aaataacata ccttagaaac cgtgtagact atattgatcc
4681 aataacccaa gaagcttgga agccgattca atttctgagt tcaaatctga gcacgctttg
4741 ccaaaaagtg actc
//