GenBank-Updates@genbank.bio.net (04/23/91)
LOCUS ECOCLAA 12688 bp ds-DNA BCT 23-APR-1991
DEFINITION E.coli retronphage (phi)R73, partial sequence.
ACCESSION M64113
KEYWORDS .
SOURCE E.coli (strain CL-23) DNA.
ORGANISM Escherichia coli
Prokaryota; Bacteria; Gracilicutes; Scotobacteria;
Facultatively anaerobic rods; Enterobacteriaceae.
REFERENCE 1 (sites)
AUTHORS Sun,J., Inouye,M. and Inouye,S.
TITLE Association of a retroelement with a P4-like cryptic prophage
integrated into the selenocystyl tRNA gene of Escherichia coli:
Retronphage (phi)R73
JOURNAL J. Bacteriol. (1991) In press
STANDARD full staff_review
BASE COUNT 3435 a 3084 c 2892 g 3277 t
ORIGIN
1 actcctgtga tcttccgcca aaattcctcc gtcaccatcc gagaaagtct aaaaatcctt
61 tattttcaaa gcatatagta aatcgctcat ccgtaaccgt ccgacaagct ctccctgaat
121 ccatgaaaaa tatgtatagt gatgtgtata gattttttat acacactttt gacttataca
181 catgccacta acagatatac aaattaaacg agcaaagccc caaaacaaac cctacacact
241 gaacgatgga caaggcctgt cattactcat caatccagac ggctcaaagg gctggcgctt
301 ccgctttcgt tttgccggta aagcacggct aatgtcattt ggcagctaca accttgtgag
361 cctcgcagaa gcacgtgaga aacgcgatac cgctcgtaag caggtagcaa acggcataga
421 cccagtggga gaacgtaaag cccaaaaact ggcacagcaa ctctcaacag agaactcatt
481 cgaaaccata tgtcgagaat ggtacactaa caaagctgac cgctggacag tggcctatcg
541 cgaagaaatc attaagacat ttgagcaaga tgtgttcccg ttcattggta aacgccctat
601 cagtgaaatc aaaccgttag aactgcttga agtattgcga cgaatagaga agcgtggggc
661 actagagaaa acacgtaagg tgcgtcagag gtgcggtgag gtttatcgct acgcaatcat
721 aactggccgc gctgaataca atcctgcgcc tgatttagcc atcgctctgg ccgttcctaa
781 acaaaaacat catccatttc tatctgccga agaattgcct cattttattc aggatctcga
841 agcgtatacc ggtagcatca taacgaaaaa tgcaacaaag atagttatgc tcaccggtgt
901 gagaactcaa gagatgcgct ttgcagcatg ggatgaggtt gaccttgaga gaggtttatg
961 ggaaatcccc gcagaacgaa tgaaaatgcg cagaccccat attatccctc tatcaacaca
1021 agtcgttgat ctttttaacc aactaaaacc tattacaaga cactatcctt acatttttat
1081 tgggcgaaac aaccgtaaca aaccaatatc taaggagagt gtgtcgcaag taattgaact
1141 actgggttat aaaggtcgtg ctacaggtca cggtttcaga catacaatgt cgacaatatt
1201 gcatgaacaa gggtttgata gtgcatggat tgagttgcaa cttgctcatg ttgataagaa
1261 tagtattcga ggaacatata atcatgctca ataccttgaa agaagaaggg aaatgcttca
1321 gtggtatagc aactatcttt taaagtaata atttctatta aggatttcga atgaaaataa
1381 tatctttatt taatcataaa ggtggtgtta gtaagacaac cacgactttt aacatggggt
1441 ggatgctagc taatcttggc tataaagttt taatagttga tgctgatcca caatgtaatt
1501 tgacagcctt agctttgggc tattcgacca ctgatgactt tgatgaaatc tataaaaaca
1561 atccaaactg tgatatttat agttgcatca aacctgttgt agatggttct ttaggaaaag
1621 ttataccatc cgacccatta gtcacaacaa atccaaattt aagtttattg tgtggtagca
1681 tctatttatc agaaattgaa acacagattg gagttgcgct gacaaccagc gctgctattc
1741 ccgcaattag aaatatcccc ggcagcatcg gagctttttt gcgtgagact gcgcgcaaac
1801 atgaatttga ttatgtcctt attgacatga gccccagcgt tggtgcatta aatgaatgtc
1861 tcttaatgtg cagtgactat tttatagttc ctacatcacc agattttttc tgtgctcagg
1921 caataaagtc actcgcaaaa gttcttccta gatggaacag cgagataaat aactttagag
1981 atagtggaat attatatcca ttccctattg atccgccgaa attcatcgga tttatatctc
2041 agaagtatcg tccaagaaat aatttaccag taaaatcatt tcaaagatgg attgatatta
2101 tcaaagatga ggtcactaat acattaatac cagctttaaa tcctatcaat atgtcaattt
2161 cggttactga ttttgaaaat gcctgtccct caaaagagcc ctttaatttg gcgaatattt
2221 ctgactttaa ctcactaatt gctcaatctc aaaaacatag cacgccggta ttcgccctct
2281 cagatgcaca aatagagcaa aatggagtaa tactggatac gatgaaagaa aacagaaaag
2341 aattcagtag taatttcaat gaattagcaa gattagttgc tgcattggca aattgataac
2401 acttagaccg aggctacgcc tagctcggtc taaaatactt attttagtga gttaggacaa
2461 atagtatatc aatcgcaatg atctagaatg aattttaccc accgagcgta tctataatca
2521 cccactttta ttgagtaggt ttgcacgtta tcaagccggc gtgactcttg ctttgaatag
2581 taaaaaagta attctccacc ttcccaattg catactactc tccttaaata aacctcatca
2641 gaaactgcca atccatggaa gtcaacttca catggaaacc ttgaatttaa atatctagtt
2701 gcttccataa acaataaaac tatatctatg aaatcctctg cttcctcaag agttgcatct
2761 cgatactcgt gctcaatttc atttcttatt ttatttattt tatcaattat tctaggtcta
2821 actattccaa ttccctctag gaaatccatc ttttttggaa agttccttag attcctttgg
2881 aaatattcgc ggccacaaaa agctcgacaa agaatatcca ctctcatatg taatgccgat
2941 tttgcatttc gcactgcatt attcatattt cggcgttcac ttcctgaatt caaatcatca
3001 attgcatctt gtaagtatgt gttaggcttc aaataatcct tttgccctat ataactccag
3061 tagcaatctg gataaacacc ctcatccaaa tcatcaggat tcaacacaat acaccctcct
3121 aagaatagag ttataattat tttttcacga gtttttagaa tgagtttacc gaaattttta
3181 tgttacacaa gaaaatggtg ctaatcccga ttgattaatt cacaatcgca gcaattatag
3241 cttatctgta tctcacaaag ctttcattga ccttgtgact tactttaacc caaagttatt
3301 agatggaagg ccagcgcgca atgctctccc cgccacgccc gcccgctttg cggggcggtt
3361 ttaatgcagt tgcactgaca cgctcacgcc gcgtcgggcg cggcgtaatc tgcaggaaat
3421 gaggcgggaa aacgcatgca aagccatgca ccttatcgat gcatggcttt tttcagtaaa
3481 aacaggcgga ttttcgggga attttacaca gactgacgtg atgccagttc tgcactttta
3541 cgcgaaaaaa tcatgttctg cgcaggggtg aatttttcac ggctgtcatc caccgaagcc
3601 gcgtcaggcc tgaatccgat ggtcgttaaa atgtcgctat cctgtgcgga ataattaatt
3661 ttttcaccct tcgcaagcca ggacaggagg gcttcacgca gggcatctgt ggcacgctgt
3721 atggcacagt ttcgggcaat ggccgtcagc tcactgtagc ccatcagctc cggtgccagt
3781 gcggccgcca gtgctgtgcc gtgctgctgc ataaaatcat tcagccgctc gcggatgctg
3841 atgtgctgaa cagcttcatg agaacgaata taacgaccgg cggcctgatt cacctgccat
3901 tttctgactt cgataatatt gcgtaattcg tccaggcggc tgacgtttct gccttctcct
3961 gacagaagcc gcagatattc ctgttcggcc gctgccagct catttttgcg ttgcagccat
4021 gccgctttgt tattctggca gacctcaaaa gcctgctgta atgacattgt ggtcacaccc
4081 cgtctcctga ttaatggttg aatggtgagc tgtaacagcc tttaactttt cggacaacag
4141 ccggtgctgt gcttgccggt gctggttttt cctccgtgac cggagaacga atcacggcac
4201 aaattgactc atgcgtttta aatgtcgccg aacagtaaat attctggcac tgcagataac
4261 tttctttgac attgtcactc acataccggc tggtgcgggt atgcgctgaa tgacgacaga
4321 aagggcagcg catcatgaca gcagtcctct ggccttaagc actgctccct gctggtctat
4381 tttgtcctgc cacaccttgc gctgtgccgg tgtgcctgcc acctcataat ccatgtgcgg
4441 gagtgttgcc gctgacagtc cggtcagccg gagaaccggc tcgccggtga ggctgatttg
4501 catctgtttt attttctgtt ccagcgatga tttcacctgc tgcatgacag ccttttccgg
4561 tgcgacgtag ccctgatggc cggtggtgtt ggcgagcgga ttttcctgta ccaggatgct
4621 cagatgcatt gcccggacaa gcgcctcaca ggtttcattc agggcgtgtt ccagctcatg
4681 ctctgcatac agactcagca ggtgatgatg tgccttccgg taggcggtgg ccgtgctgtc
4741 acacgcccct ttcaggcgtt cacgttcaaa attcagcacc acggccagat tgtcatattc
4801 ctgtaccagc tcccggcgtg ccacgcgctc aatgtggcgc tgtttcagct cgtcgctcag
4861 gacacctccg gctgcacgaa aggccgtgcg ccagtcgtca gcgtcgtttc cgtcggcctg
4921 cgccagcgca tttttttcct gctctgcccg ttcaatggcc gtgacggtct catccatcag
4981 gcgggcgttc tcaagatgag cgactctggc cttttccagt tgtgccagcg cgggttgcag
5041 atattcaggg atggtgttgt cagacatttt ccggctcctc gtcacttcag gttaagaaaa
5101 ttgtgacgta caccggacaa caacacgacg cattgcagat gtgccagccc tgacacagga
5161 gactcatcct cagaccggca agccaggaaa aggtcgcagg aaaaaccggc ttactgtttg
5221 tttttttata ttttactgtt cacctctgtt caccataaga aaaaagataa gtaatacagt
5281 aagttaaagg gtgaacaatc gcagtaatga ctgttcaccg tctgttcacc actgttcacc
5341 cgttgatggg ctttttgtgc tgtttattac tgtttgtttt tattaattcg ccgggaatga
5401 ataagaaaaa acgatttgta tttcactata aaaattacga attgctttaa gtggctttaa
5461 atgactttaa gtggaggtga acaaaaaaat acacaagcat tgtaaggctg ccggaacaaa
5521 tcccccctgt tgcgtctgct gaaaatattc acaaaataaa gcgctacccg aagccggacg
5581 gacttatccg gtgccgtatg gacattaacg aggtagcccg atgcaagctg ttttttcttc
5641 cccgtctccc gcccctgtga cgccactgat gccgctgccg gacatcacgc aggagcgttt
5701 tttacgtctg ccggaagtga tgcacctgtg cggcctgtca cgctcgacca tctacgaact
5761 catccgtaag ggggaatttc cgccgcaggt gagtcttggc ggtaaaaatg tggcctggct
5821 gcactctgaa gtcaccgcat ggatggccgg gcgcattgcc ggacgcaaac gggggtacga
5881 cgcatgatga tgcctgttct gcaaaaagtc cctttttctg gcttgccttt ttccggcatt
5941 tgcggatata gtttttccgc tgtcgcaaaa tcggcagccg ggcgtaggaa cccgtgtaac
6001 tcgaaggcga catatgacgc gccatgcgtc tttttttgtg tcgcaatcaa cgccacagag
6061 cgccagatta tggtgtggcg tgtggtttgc cgtgcaggta tgatcctgtt cgcaatcgca
6121 tgttatgcca ctgagtcaat ggtagctcag gcggggcagc ctccgggctg gccggtattc
6181 ttcgaggccg gtattcctac ccccgtctgg gctatcgcca tcgagcgtag gaactccggc
6241 gatagcagtt atttgctact cgaaggagac ggccttatgg ctacaaccct taccccctca
6301 caccctgaat ttgtctttgt gtttgcggct gtccgtcgcg cagaccgtca tccccgtatc
6361 tgtatgcttc gcaccgtcgc cggtgatgaa cgcagtgccc gccgttccct tgtccgtgac
6421 tatgtgctct cccttgctgc ccgtctgccg gtggtggagg tgtcccgtgc gtaataaaaa
6481 agcccctcag accgtctcag cgcgtcatga cgcccgtgaa cacctcagca ttgaggctta
6541 ccataagctc aaccgcgcca gcgccgtatc ccagtttgtt gggggtgatt tgattcaccg
6601 tgaactctcc ggcctgcatc agctctacat tccgcatatt ttcagctacc tgaatgaaga
6661 tattgatttt gtgctgaatg agctgaaagc caaaggcctg tgccgcgatt ttctcgccca
6721 gcagaaagac cggggagaca agacgcatgt ttgattttcc ccagcccggt gagatttacc
6781 gttctgccgg ttttcccgat gtggccgtgg tcggcattct ggaagacggt attccgtggg
6841 aaatgccgta ccgctgcccg gacattgtct ggaacccgta ccgccgtaaa ttcagtatcc
6901 ttgtgcgtat cctcgctgac gggcgcacca cagacatccc gctggggcgt tttctgcggg
6961 aatttacctg tgaccgtcct gacctgttca gacgcagccc cgtaaaccgg catgcggtac
7021 tgaaagaaat ggccggagac ccggaattac agaaatggcg ggagaaatat ctggatattt
7081 acccatagga ccctgttccg gtcagccggg cggcaccggt ggcgcgggaa tggcgggaaa
7141 ttccccgcac ggagcctgac ccggaaatca ccccggataa cagttaccgc aattatctgt
7201 aattaaaaaa cgacacccga aaaattaaat gtgcgtattc gcgcagggat acgcacgtct
7261 tcaggagacg cagatatgcc ttatcagtta atgcaaccgg cacggaatgc agtcatctgt
7321 cacagggagg aaaacaaatg aaaacaccct taccgcccgt cttacgcgct gccctttacc
7381 gtcgcgctgt cgcctgtgcc tggctgaccg tgtgcgaacg tcagcaccgc tacccgcatc
7441 tcacccttga gtcactggag gcggccatcg ccgctgagct ggaaggcttt tatctgcgcc
7501 agcacggtga ggaaaaaggg cgtcagatag cctgtgccct gctggaagat ttaatggaat
7561 ccggccccct gaaggccgcg ccgtcgctgt cctttctcgg gctggttgtg atggatgaac
7621 tctgtgcccg tcacataaaa gcgccggtac tgcactgaag gagaacaaca ccatgaaaat
7681 aaacgtaacc gccaccgtca gccatgcgct cggccactgg ccgcgtattc tcccggcgct
7741 ggggattcag gtgctgaaaa accgtcatca gccctgtccg gtctgtggcg ggagtgaccg
7801 cttccgtttt gatgacaggg aggggcgcgg cacctggtac tgcaatcagt gtggtgccgg
7861 tgacggcctg aaactggttg aaaaggtgtt tggtgtttcc ccgtccgacg cggccacaaa
7921 ggtggctgcc gtgaccggca gcctgccccc ggctgacccg gcagtgacgg ccgccgccgg
7981 tgctgaaaca gaagccgccc ggaagaacgc cgccgcactg gcacaaaccc tgatggcgaa
8041 aacccgtccc ggaaccggta acgcctacct gacccgcaag ggctttcccg gccgggaatg
8101 ccggatgctg accggcacac acagagccgg tggcgtgagc tggcgcgccg gtgaccttgt
8161 ggtgccactg tatgacgaca gcggcgaact ggttaacctt cagttaatca gtgctgacgg
8221 ccgtaagcgc accctgaaag gcggacaggt caggggcacc tgtcacaccc ttgaaggaca
8281 gaatcaggcc ggaaaacgtc tgtggatagc ggagggatac gcgaccgcac ttaccgtgca
8341 tcacctgacc ggtgaaacgg tgatggtggc gctttcttcc gtgaacctcc tttctctggc
8401 cagccttgcc cggcagaagt atccggcctg tcagattgtc cttgccgcag accgtgacct
8461 cagcggtgac ggccagaaaa aagccgccgc agccgcagat gcgtgtgaag gtgttgttgc
8521 cctgccgccg gtcttcggtg actggaatga tgccttcacg cagtacggcg gggaagccac
8581 ccgtaaggcc atttatgatg ccatccggcc accggctgaa agcccgttcg acaccatgag
8641 cgaagcggag ttttccgcca tgagtaccag cgaaaaggcc atgcgtatct atgagcatta
8701 cggcgaggcg ctcgcggttg atgccaacgg ccagcttctg tcccgttatg aaaatggtgt
8761 ctggaaggtg ctgccaccac aggactttgc ccgggatgtg gccgggctgt ttcagcggct
8821 gcgcgcgccg ttctcctccg ggaaggtggc ctccgtggtg gacaccctga agctgattat
8881 tccgcagcag gaagccccct cccgccgcct gattggcttt cgtaacggcg tgctcgacac
8941 gcagaacggc acgttccacc cgcacagtcc gtcacactgg atgcgcaccc tgtgcgatgt
9001 ggatttcacc ccgccggtgg aaggggaaac gctggaaacc cacgcccccg cattctggcg
9061 ctggcttgac cgtgccgccg gtggctgtgc ggaaaaacgc gacgtgattc tggccgcact
9121 gtttatggtg ctggcaaacc gctacgactg gcagctcttt ctggaggtga ccggtcccgg
9181 cggcagcggc aaaagtatca tggccgaaat agccaccctg ctggccgggg aggataacgc
9241 cacgtcggcc accatcgaga cgctggaatc cccgcgtgag cgtgccgcgt taactggctt
9301 ctcactgata cgcctgccgg accaggaaaa atggagcggc gacggagccg gactcaaggc
9361 catcaccggc ggcgatgcag tgtccgttga cccgaaatac cgggatgcgt actccacgca
9421 catcccggcg gtgattctgg ccgtgaacaa taacccgatg cgcttcaccg accgcagcgg
9481 cggcgtgtca cgccggcggg tgattattca cttcccggaa cagatagccc cgcaggagcg
9541 cgacccgcag cttaaggaca aaatcacccg cgagctggcg gtcatcgtgc gtcacctgat
9601 gcagaagttc agcgacccga tgctcgcccg gtcactgctt cagtcccagc agaactcaga
9661 cgaggcactg aacatcaaac gggatgccga cccgacgttt gattttatcg gctatctgga
9721 aaccctgccg cagaccagcg gcatgtatat ggggaacgcc agtatcatcc cgcgtaatta
9781 ccgtaaatac ctctatcacg cctatctggc ctacatggag gcaaacggct accggaatgt
9841 actcagtctg aaaatgttcg gactggggct gccggtgatg ctgaaggaat acgggctgaa
9901 tttcgagaag cgccatacca aacaggggat acagaccaac ctgacgctga aagaggaaag
9961 ctacggcgac tggctgccga agtgcgacga ccccgcagca acataacctc actcagaccg
10021 gcaacagccg gtcttttcct ttctggccat tgccacaagg tgaacaatcc actgttcacc
10081 cttcaccgtt tattcaccct ttatcactat gaaattatta ataaaaaacc agaggtgaac
10141 agtgtgaaca gtaaaacctg aaaaaacttt ttatcacccc gcgcatcgcc cgactggaca
10201 gatccagaac gagcaaaaat cacaaaggtg acgagtcgac tgttcactct tcaccaactc
10261 atcaccacct aaccacatga tataaaatga taaataatcg aggtgaacag ttaaatgcaa
10321 aaaaactttt tctcagctct tggataaaag aaaattaatt cacatcaata gctttcctct
10381 tgaatcctct tgaggtttat gagagcgtaa cagagccaaa cctagcattt tatgggttaa
10441 tagcccatcg cgcatgagtc atggtttcgc ctagtatttt agctatgccc gtcgttcagt
10501 tcgctgagcg gcggctgggg gccaccgatc agcgaactga tcgacgtgct caagtaggtt
10561 tggctctttt agtcctctac catcaaggtg cataaggata ttctcgatgc tgactcagct
10621 aaaaaaaaat ggtactgagg tatctagagc aaccgcgtta ttttcatcat tcgttgaaaa
10681 gaacaaagta aaatgtcctg gtaatgtaaa aaaattcgtc tttctgtgtg gtgctaacaa
10741 aaacaatgga gaaccatcag caagacgatt ggaattaata aatttttctg aaaggtattt
10801 gaataactgt cacttttttc ttgctgaact agttttcaaa gaattaagca ccgatgaaga
10861 atcattatct gataatttat tagatatcga agctgactta tctaaattag ctgatcatat
10921 tatcattgtt ttagaaagtt attcatcttt cacggaactt ggtgcattcg catacagcaa
10981 gcaattacgc aagaaattaa taatagttaa caatacaaaa tttataaatg agaaatcatt
11041 tataaatatg ggaccaataa aggctattac tcagcaatca caacaatctg gtcatttctt
11101 acattataaa atgacagaag gtattgaaag tatagagcgc tctgatggga ttggcgaaat
11161 attcgacccc ctatatgata ttctttctaa gaacgacaga gcaatttcaa gaactttaaa
11221 aaaagaagag ttagatcctt ccagtaactt caataaagac tcagtacgat ttattcatga
11281 cgtaattttt gtatgtggtc ctttgcaact taatgaactc atcgaaataa tcacaaaaat
11341 atttggcaca gaaagccatt acaaaaaaaa tcttctaaag caccttggta ttctaatagc
11401 tattagaata atatcatgca caaatgggat ttattattct ttgtataaag aatattattt
11461 taaatatgac tttgacattg acaacatatc atcaatgttt aaagtttttt tcctcaagaa
11521 caagccagaa aggatgaggg tatatgagaa tatatagcct aattgattct cagacattga
11581 tgactaaggg atttgcttct gaagtaatgc gatcacctga gccgccaaaa aaatgggata
11641 tagctaagaa aaaaggaggt atgagaacaa tttatcaccc gtcatcaaaa gttaaattaa
11701 ttcaatattg gttaatgaat aatgtttttt cgaagctccc aatgcataat gctgcatatg
11761 catttgttaa aaaccgatca ataaaaagca atgctttatt acatgccgaa tcaaagaata
11821 agtattatgt gaaaatagat ctcaaagatt ttttcccttc aataaaattt actgattttg
11881 agtacgcatt cactcgttat cgagatcgca ttgaatttac tacagaatat gataaggagt
11941 tactacaact tataaaaacg atctgcttta tatcagatag cactctccct atcgggtttc
12001 ctacatctcc attaattgca aactttgtgg caagagaact tgatgaaaaa ctgacgcaaa
12061 aactaaatgc aattgataaa cttaatgcca cttatacacg atatgctgat gatattattg
12121 tctctacaaa tatgaaaggg gctagcaaat taattctgga ttgttttaaa agaacaatga
12181 aagagattgg tccagacttt aaaattaaca ttaaaaaatt taagatttgt agtgcttcgg
12241 gaggaagtat agtagttacc ggattgaaag tttgccacga ttttcatatt acattacata
12301 gatcaatgaa agataaaata agattgcatc tttctctttt atcaaagggc atattaaaag
12361 atgaagatca taataaactt tctggttata ttgcttatgc aaaagatata gaccctcatt
12421 tttatacaaa actgaacaga aaatattttc aagaaataaa atggattcag aatctccaca
12481 acaaagttga ataaacttta tattttggat gcaccccaat aacttcattg attaaattgg
12541 gaacaatata ggcttttcag gatgacctac actctagaga atgtgtatac aaaagtgtat
12601 aagttatttt caaacctata taaaatacag caaaatcaat gcattggcgg cattttacca
12661 ctcctgtgat cttccgccaa aatgcctc
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