GenBank-Updates@genbank.bio.net (01/16/91)
LOCUS RPLCG 8026 bp ds-DNA VRL 16-JAN-1991
DEFINITION Rhesus papillomavirus type 1, complete genome.
ACCESSION M60184 M37718
KEYWORDS complete genome.
SOURCE Rhesus papilloma virus type 1 DNA, isolated from Macaca mulatta.
ORGANISM Rhesus papillomavirus type 1
Viridae; ds-DNA nonenveloped viruses; Papovaviridae.
REFERENCE 1 (bases 1 to 8026)
AUTHORS Ostrow,R.S., LaBresh,K.V. and Faras,A.J.
TITLE Characterization of the complete RhPV 1 genomic sequence and an
integration locus from a metastatic tumor
JOURNAL Virology (1991) In press
STANDARD simple staff_entry
FEATURES Location/Qualifiers
CDS 22..597
/gene="E6"
/codon_start=22
CDS 594..935
/gene="E7"
/codon_start=594
CDS 941..2818
/gene="E1"
/codon_start=941
CDS 2757..3857
/gene="E2"
/codon_start=2757
CDS 4468..5868
/gene="L2"
/codon_start=4468
CDS 6289..7353
/gene="L1"
/codon_start=6289
BASE COUNT 2118 a 1789 c 2067 g 2052 t
ORIGIN
1 tacttaacta tactcctgag tatgaaaaag ggtgtaaccg aaaacggtgc aaccgaaagc
61 ggtgcatata aaaagctcct gaaactttgg ttttttgtgg caatggtaga ctgccctggc
121 gagccaaacg aattgcccag gaccattcac gaactatgcg agcagcgtga ggagaccctg
181 cacgagcttc aattggagtg cgtgtattgc ctgaaggaac taacacgcat tgaggtatat
241 gattttgcac ggtgggattt aagattggtg catagacaag gcaagccata cggggtatgt
301 cccatatgct tgaggtttta ctcaaaaatt cgaaaatata ggcgatacga gtattcaata
361 tatgggtgta ctttagagcg tagaactaga aaacagttag tggaggtatt aataaggtgt
421 tattgttgtc agaagcccct gtgtcccatt gaaaagcaaa gacacgtgga ccaaggacaa
481 aggttccaca gaatagcggg acagtggacc ggaaggtgct tgatgtgctg gagaccaaca
541 gtacctgaga cccagccaga cactgatcaa cagggcagta gtttcttgca agcatgattg
601 ggcctaaacc taccctcgag gacattgtcc tagatttgca accatttcca caaccgcaac
661 cggtcgacct tatgtgttat gagcaattat ctgacagctc agaggatgag gatgaagtag
721 accatcatca caataatcag cagcagcatc atcagcacgc cagacctgaa gtaccagagg
781 atggtgattg ttatagaatt gtgagcgatt gttacagctg tggcaagcca ctgaggctgg
841 ttgtggttag tagccacgaa gagttacgtg tgctagagga cctgctgatg ggcacgcttg
901 acattgtgtg tcccagctgt gccagcagag tgtaactgca atggaccctg aaggtacacc
961 aggggaaggg gtggggtgta cggggtggtt taatgtggag gctatagtag aacgtaaaac
1021 gggggatgtg gtgtcagagg acgaagacga cacagaggat acagggatag atttggtaga
1081 ctttatagat gacacatgtg gaagtgtgca gacaggggac gaggcacctg gggcgttgtt
1141 gcacgcacag gaaacacaag cgcatgcaga ggcagtgcag gttttaaaac gaaagtttgt
1201 aggcagtccg gcagttagtc cgttgggaaa ctacaatccc tgtgtagaca gggatttaag
1261 tcccagatta aatgaaataa gtttaaacca aggcagcgga caggcaaaac ggagactgtt
1321 tttgccggac agcggttatg gcaatactga agtggaaacg tcgctattgc aggtagcagg
1381 ggggggcggc caggatgtac aggcaggggg gaaggaaaac acacggccag atgacggggg
1441 gggggatgcc acgcagctgc tccgttgcag caacttaaaa gccactttgc tgagtaaatt
1501 taaatctgtg tatggagtta gcttttcaga gttggtgcga agctttaaaa gcgacaggac
1561 cacgtgcgct gactgggtgg tgggggcagc gggggtccat catagcgtgg cagaggggtt
1621 aaagcagctc attcagcctt tttgcagtta tgcacacatc cagtgcctta catgcgactg
1681 gggggtgtac ctgctactgc tggcacggtt taagtgtggc aaaaacagac taacagtttc
1741 taaatgcatg agcacgctgt taaatgtgca agaaacgcac atgctaattg aaccaccgaa
1801 gctgcgtagc gcagcagcag ctctatactg gtacaggaca ggtatatcaa atgtaagtga
1861 agtaataggg gaaacacctg agtggattac aagacagaca atgtttcaac atggcctgga
1921 ggacagtata tttgatttgt ctgaaatggt gcagtgggca tacgaccacg actttacaga
1981 tgacagtgtg atagcgtacg agtatgcaca gctggcaggg atagacagca acgctgctgc
2041 atttttaaaa agtaatgcac aggccaaata tgtgaaggat tgtgccacta tgtgtaggca
2101 ctacaaaaga gccgaaaggc aacagatgac tatgtcacag tggataaaac aaaggtgtga
2161 aaaaactgat gatggagggg actggaggcc aatagtgcag tttttaaggt accaaggggt
2221 ggagtttata gcatttttag cagctttaaa gctgtttttg aagggcattc caaaaaaaaa
2281 ctgcatagtg ttatttggac cgccaaatac aggtaaatcc tactttggca tgagcttaat
2341 acatttcttg caagggtcta tcatttcata tgtaaattcc aacagtcact tttggttgca
2401 gcctctggca gatgctaagg tggccatgtt ggatgatgca actcctcagt gctggtccta
2461 tatagataat tatttaagga acgcactgga cgggaacccc attagtgttg atagaaaaca
2521 taaaaatctt gtacagatga agtgcccccc attgcttatt acctcaaaca ccaatgcagg
2581 tcaggatgac aggtggatgt atttgcacag tagaatggtt gtgtttacat ttgaacagcc
2641 atttccattt gatcagaacg gtaatccagt ttatgagtta aatgataaaa actggaaatc
2701 ctttttctca aggacatggt ccagattaga tttacaagag gaagaggaga cggaaaatga
2761 tggaagcact tgcagagcgt ttaagtgcgt tgcaggacag aatcttagaa ctgtatgaag
2821 ctgatagcaa ggacttaaaa gaccaaatag agcactggaa atgtgtgcgc caagaatgtg
2881 cagtgttgta taaggcacgg gaagtagggt tttcccacct gaaccatcag gtggtgccat
2941 cattaactgt gtcacgggct aaagcccaca aagcaattga agtgcagctg gcattagaga
3001 gtttacaaaa ttcggagtat aacaatgagg agtggacgct gcaagatgcc agcttggaga
3061 tgtggcacac agaacctaag ggatgcttca aaaaaacagg tgttccagta acagttttgt
3121 ttgactgtga caaagacaat accatggagt atgtgctgtg gggacacata tatgtgtggg
3181 gggacaatgg atgggtgaag acattcggtg aggcggacaa ctggggtctg cactataccg
3241 ttgctgggga aaaggtgtac tatgtgcagt tttatgagga tgctaaaaaa tatggacatg
3301 gaaatggaaa tggagatggc tatgagtggg aggtgcatgt tggtgggacg gtaatgcatt
3361 attctgactc tgtgtctagc gctacccact gcgacaaact acccactgtt gaaattgtta
3421 gcggactgca acacatcaac ccatcacccc cccccgccaa ccccagcgcc aaggaaaacg
3481 tgtggtcatc gcctgcaaag cgagtgcgtc ggtcagactc aggtggagat ccagtgcggg
3541 ccttggacgg taaaagccgg tcagtccttt gtggatctgc acacaacaac gctacaggga
3601 gttccggtga cagtgactat acgcctatag tgcacctaaa aggtgaatct aactgtttga
3661 agtgtttgcg gttcagactg ggaaagcata agcacctgta tattaatata tcgtccacct
3721 ggaggtgggc aaaccatgca agtgagaaag caattgtaac tgtgacattt gcaaatgagc
3781 ttcaaagaca acagttttta aacactgtaa aaataccttc tactgtaact ctgtcacaag
3841 gagtaatgac tgtgtagtgt gcattggcac acagggtttt gtattttttt ttttacaagt
3901 actgtttgta attaattttg tatattgact gtatattgaa ttgtggtgtg cattggcaca
3961 cagtggtctc atttcaagcc tgtacataca ttgaacagta tccaggtact gtgtaaagcc
4021 aattgttgct gctacgcttg taaaccgcca ccattctgct gtttctggtt gtgtttttgc
4081 tgctgttttt gcttggcctt gtgttttgtg cacttgttga gtcgctgctt ctgtgttttt
4141 ccggtatgcc tcagtgttgc tgcttatgct gttgttctgg gtgtccatag tgaacccgtt
4201 tgcagctttt ggtctgtgtt tgttttgttt tttaaccccg ttgcttttga tacacctgca
4261 tgccctcagt gtggtttaca gcagaatgat gtaaatactg cacatagaca tgttattatc
4321 agttattttg ctattgttgc tgttaatatt tactttgttt tggcactact tgttggtgct
4381 gcgtttaaag ccaccagcag ggcgcgcacg taaatgtaaa cagctgagac ggcggcgcag
4441 ataataaacg tcacacaata aagcgtcatg aagcatgcac acttgtcgcg gcgcaagcga
4501 gcagccccgc gcccacctgg tgggcggcaa aagcgtgcat ctgccacgca gctgtaccaa
4561 acctgcaagg cggcaggcac atgccccccc gatgttatcc ctaaggtgga aggcacaacc
4621 gtagcagatc aaattttaaa gtatggcagc atgggtgtat actttggggg tttgggcatt
4681 ggctctggtg ctggcacggg cggaagaagc ggctacgtgc ccctaggttc acgtcccgca
4741 tccattcccg agccgttgcc acgaccacca gtaacaattg agcctgtggg cccttccgat
4801 ccctccattg tgtcattgct ggaagagtcc agactaatag aggcaggtgt tccagccccc
4861 acattcccca ctcatggggg gtttgaaatt agcacatctg aagttagcac acccgctgtc
4921 ctggatgtgt ctagcggtgg ctctgatgtg cacgttagtg tgacctcctt tacaaaccct
4981 acctttactg agccatctgt gctgcgaccc ccgccccccg tagaggcgtc tggacgcctg
5041 gtaatctctg catcctctgt cagcacgcat agctacgaag aaatacccat ggacacattt
5101 gtaataactg gagaccacaa ctataacaca accagcacac ccattcctgg ttcacgtgcc
5161 cctgcacgac ttggtctata tggacgtgct acccagcaag tgcgggtggt ggatcctgca
5221 tttataacca cccctgcgcg actggtgaca tatgacaacc ctgcatatga gggtgtggac
5281 gatgccaccc tgcaattttc ccactctgac attcaccagc cgccagatcc tgacttcctt
5341 gacattgtgg cattgcacag gcccgccttg acctcacgta agggcaccgt gcgctttagc
5401 cgattaggcc agcgggcaac actaaccacg cgcagtggta agcgtattgg ggccaaggtg
5461 catttctatc atgacctcag tcccattgcc cctgcagaaa gcatcgagtt gcagcccctg
5521 tcatctcagg gagagctgta tgacatatat gcagatgtag acgggcaaga ggacgctgca
5581 gctgtggcta acaccccatt aaacagcaac agcagtggca ttgcaagccc ctggaacacc
5641 acagtgccac tcagtgcagg ggcggacgtg acgctgcagt ccggccccga cgtgtccctg
5701 gatgcaccag tggctgaatc gcctgtgcac cctggagtgc ctctaaggcc ttctgcacat
5761 attattctgt acgggggaga cttttatttg caccctagct acctcggtat tcgcaggaaa
5821 cgtaaacgca tgcacaattt cttttcagat gtctatgtgg cggcctagtg actccaaggt
5881 ctacctacca cctgtcctgt gtctaaggtg gtcagcacgg atgaatatgt ctctcgcaca
5941 agcatatact atcacgctgg cagttccaga cttctggctg ttggacatcc ctactatgct
6001 gtaaagaagg gcaacaacaa agtgtcagtg cccaaggttt ctggtttaca ataccgagtg
6061 tttcgagtgc gtttgcctga ccccaataag tttggccttc cagatgctaa cttttatgac
6121 cctaacacac agcgccttgt gtgggcctgt ttaggcgtgg aggtggggcg tggacagcca
6181 ctgggagtgg gcaccagtgg tcatccactg ctgaacaaac tagatgacac ggaaaatggc
6241 cctaaagtgg ccgggggaca aggagcagat aacagggaat gcgtgtcaat ggactacaag
6301 caaacacagc tgtgcatgct aggatgcaag ccccctgtgg gtgagcattg gggaaaagga
6361 aatccttgca ccactggcgc tgcaggtgac tgccctgcac ttgagcttgt taactcagtt
6421 atacaggatg gggacatggt tgatacaggg tatggcgcta tggactttaa tgcactgcag
6481 gccaacaaat cagatgttcc tatagacata tgcactagcg tgtgcaaata ccctgactat
6541 ttaaaaatgg catcagatcc ctatggcgac agcttgtttt tttacctgcg aagggagcaa
6601 atgtttgtca gacacctgtt taacagagct ggcacaatgg gtgacagtgt ccctgatgac
6661 ttgtatatta aaggcagtgg aagcaatgtc aagcttgcca gccacgtgtt ttaccccaca
6721 cctagtggct caatggtgac atctgatgcc caattattta acaagccata ctggttacag
6781 aaagcccagg gccataacaa tggcatctgt tggggcaacc aagtgttcct tactgtagtt
6841 gacaccacta ggagcacaaa catgacactg tgtgcatcca ctgcctccac agttactaca
6901 ccatataata atgagagttt taaagagtac ctgcgacatg tggaggagtt tgatttgcaa
6961 tttatatttc agctgtgcaa ggtaaccctg aacactgaag taatggccta catacacagc
7021 atggatgcca gcatactgga ggactggaac tttggtttgc agcctcctcc gtctggctcc
7081 ttgcaggaca cctataggtt tgtgacgtct gccgccatca cctgtcaaaa acctgcaccc
7141 cccaaagaaa aggaagaccc gttggctaag tatacctttt gggaggtgga tttaaaggaa
7201 aagttttctg cagatttaga ccaatttccc ttaggccgca aatttttgct gcaagctggc
7261 atgcgtgcac gccctaccct gcgcgccccc aaacgcacag cctcatctac ctcatcttcc
7321 agcccccgca aacgcaaacg caccaaacgc taacgttgct tatatttatg ttgttgtacc
7381 cagtgtgcat gatttatgta tgtgtgcatg ttgtacgtga ttttgtattt cctgtgttgt
7441 gcgtgtcact gttttgtgtt gttgcgtgag tgtgttgcac ttatgtgttt attaaagtat
7501 gcgtggtcgc acccgagtga gtaactgtgt gtgtccggcg tgtagtttct gtcacatgca
7561 tgcatgcaca cccaaacact gttgccactg cctttaacag cttgcctgct gcacttccat
7621 tttgaaccct tctccatttt ccctgcaaac cctccatttt atggtctcga ccggtttcgg
7681 tcgcgcttgg cacgcatttt gggcaaacaa aaccacaaca ctgctaatcc tctggcttcc
7741 tgcctctcct actgctgcat acctgtggtt gtgctttggc gctccctggt gactcactgt
7801 ctctgcaaac aaaaatttgc acacacactt aatccaaccc tctttgtaca aaatgctttt
7861 ggcagtacat ttctaagagt tactcatgct aattgcatag ttggccacaa tttcagggtt
7921 ggattgccaa tactatgtcc ttttaaatgt gattaatttt caaaatgttc ttgcaggtgt
7981 gtgtgaccgg gatcggtcaa actttcacaa gcatttttta tagtaa
//GenBank-Updates@genbank.bio.net (03/07/91)
LOCUS RPLCG 8026 bp ds-DNA VRL 07-MAR-1991
DEFINITION Rhesus papillomavirus type 1, complete genome.
ACCESSION M60184 M37718
KEYWORDS complete genome.
SOURCE Rhesus papilloma virus type 1 DNA, isolated from Macaca mulatta.
ORGANISM Rhesus papillomavirus type 1
Viridae; ds-DNA nonenveloped viruses; Papovaviridae.
REFERENCE 1 (bases 1 to 8026)
AUTHORS Ostrow,R.S., LaBresh,K.V. and Faras,A.J.
TITLE Characterzation of the complete RhPV 1 genomic sequence and an
integration locus from a metastatic tumor
JOURNAL Virology 181, 424-429 (1991)
STANDARD simple staff_entry
FEATURES Location/Qualifiers
CDS 22..597
/gene="E6"
/codon_start=22
CDS 594..935
/gene="E7"
/codon_start=594
CDS 941..2818
/gene="E1"
/codon_start=941
CDS 2757..3857
/gene="E2"
/codon_start=2757
CDS 4468..5868
/gene="L2"
/codon_start=4468
CDS 6289..7353
/gene="L1"
/codon_start=6289
BASE COUNT 2118 a 1789 c 2067 g 2052 t
ORIGIN
1 tacttaacta tactcctgag tatgaaaaag ggtgtaaccg aaaacggtgc aaccgaaagc
61 ggtgcatata aaaagctcct gaaactttgg ttttttgtgg caatggtaga ctgccctggc
121 gagccaaacg aattgcccag gaccattcac gaactatgcg agcagcgtga ggagaccctg
181 cacgagcttc aattggagtg cgtgtattgc ctgaaggaac taacacgcat tgaggtatat
241 gattttgcac ggtgggattt aagattggtg catagacaag gcaagccata cggggtatgt
301 cccatatgct tgaggtttta ctcaaaaatt cgaaaatata ggcgatacga gtattcaata
361 tatgggtgta ctttagagcg tagaactaga aaacagttag tggaggtatt aataaggtgt
421 tattgttgtc agaagcccct gtgtcccatt gaaaagcaaa gacacgtgga ccaaggacaa
481 aggttccaca gaatagcggg acagtggacc ggaaggtgct tgatgtgctg gagaccaaca
541 gtacctgaga cccagccaga cactgatcaa cagggcagta gtttcttgca agcatgattg
601 ggcctaaacc taccctcgag gacattgtcc tagatttgca accatttcca caaccgcaac
661 cggtcgacct tatgtgttat gagcaattat ctgacagctc agaggatgag gatgaagtag
721 accatcatca caataatcag cagcagcatc atcagcacgc cagacctgaa gtaccagagg
781 atggtgattg ttatagaatt gtgagcgatt gttacagctg tggcaagcca ctgaggctgg
841 ttgtggttag tagccacgaa gagttacgtg tgctagagga cctgctgatg ggcacgcttg
901 acattgtgtg tcccagctgt gccagcagag tgtaactgca atggaccctg aaggtacacc
961 aggggaaggg gtggggtgta cggggtggtt taatgtggag gctatagtag aacgtaaaac
1021 gggggatgtg gtgtcagagg acgaagacga cacagaggat acagggatag atttggtaga
1081 ctttatagat gacacatgtg gaagtgtgca gacaggggac gaggcacctg gggcgttgtt
1141 gcacgcacag gaaacacaag cgcatgcaga ggcagtgcag gttttaaaac gaaagtttgt
1201 aggcagtccg gcagttagtc cgttgggaaa ctacaatccc tgtgtagaca gggatttaag
1261 tcccagatta aatgaaataa gtttaaacca aggcagcgga caggcaaaac ggagactgtt
1321 tttgccggac agcggttatg gcaatactga agtggaaacg tcgctattgc aggtagcagg
1381 ggggggcggc caggatgtac aggcaggggg gaaggaaaac acacggccag atgacggggg
1441 gggggatgcc acgcagctgc tccgttgcag caacttaaaa gccactttgc tgagtaaatt
1501 taaatctgtg tatggagtta gcttttcaga gttggtgcga agctttaaaa gcgacaggac
1561 cacgtgcgct gactgggtgg tgggggcagc gggggtccat catagcgtgg cagaggggtt
1621 aaagcagctc attcagcctt tttgcagtta tgcacacatc cagtgcctta catgcgactg
1681 gggggtgtac ctgctactgc tggcacggtt taagtgtggc aaaaacagac taacagtttc
1741 taaatgcatg agcacgctgt taaatgtgca agaaacgcac atgctaattg aaccaccgaa
1801 gctgcgtagc gcagcagcag ctctatactg gtacaggaca ggtatatcaa atgtaagtga
1861 agtaataggg gaaacacctg agtggattac aagacagaca atgtttcaac atggcctgga
1921 ggacagtata tttgatttgt ctgaaatggt gcagtgggca tacgaccacg actttacaga
1981 tgacagtgtg atagcgtacg agtatgcaca gctggcaggg atagacagca acgctgctgc
2041 atttttaaaa agtaatgcac aggccaaata tgtgaaggat tgtgccacta tgtgtaggca
2101 ctacaaaaga gccgaaaggc aacagatgac tatgtcacag tggataaaac aaaggtgtga
2161 aaaaactgat gatggagggg actggaggcc aatagtgcag tttttaaggt accaaggggt
2221 ggagtttata gcatttttag cagctttaaa gctgtttttg aagggcattc caaaaaaaaa
2281 ctgcatagtg ttatttggac cgccaaatac aggtaaatcc tactttggca tgagcttaat
2341 acatttcttg caagggtcta tcatttcata tgtaaattcc aacagtcact tttggttgca
2401 gcctctggca gatgctaagg tggccatgtt ggatgatgca actcctcagt gctggtccta
2461 tatagataat tatttaagga acgcactgga cgggaacccc attagtgttg atagaaaaca
2521 taaaaatctt gtacagatga agtgcccccc attgcttatt acctcaaaca ccaatgcagg
2581 tcaggatgac aggtggatgt atttgcacag tagaatggtt gtgtttacat ttgaacagcc
2641 atttccattt gatcagaacg gtaatccagt ttatgagtta aatgataaaa actggaaatc
2701 ctttttctca aggacatggt ccagattaga tttacaagag gaagaggaga cggaaaatga
2761 tggaagcact tgcagagcgt ttaagtgcgt tgcaggacag aatcttagaa ctgtatgaag
2821 ctgatagcaa ggacttaaaa gaccaaatag agcactggaa atgtgtgcgc caagaatgtg
2881 cagtgttgta taaggcacgg gaagtagggt tttcccacct gaaccatcag gtggtgccat
2941 cattaactgt gtcacgggct aaagcccaca aagcaattga agtgcagctg gcattagaga
3001 gtttacaaaa ttcggagtat aacaatgagg agtggacgct gcaagatgcc agcttggaga
3061 tgtggcacac agaacctaag ggatgcttca aaaaaacagg tgttccagta acagttttgt
3121 ttgactgtga caaagacaat accatggagt atgtgctgtg gggacacata tatgtgtggg
3181 gggacaatgg atgggtgaag acattcggtg aggcggacaa ctggggtctg cactataccg
3241 ttgctgggga aaaggtgtac tatgtgcagt tttatgagga tgctaaaaaa tatggacatg
3301 gaaatggaaa tggagatggc tatgagtggg aggtgcatgt tggtgggacg gtaatgcatt
3361 attctgactc tgtgtctagc gctacccact gcgacaaact acccactgtt gaaattgtta
3421 gcggactgca acacatcaac ccatcacccc cccccgccaa ccccagcgcc aaggaaaacg
3481 tgtggtcatc gcctgcaaag cgagtgcgtc ggtcagactc aggtggagat ccagtgcggg
3541 ccttggacgg taaaagccgg tcagtccttt gtggatctgc acacaacaac gctacaggga
3601 gttccggtga cagtgactat acgcctatag tgcacctaaa aggtgaatct aactgtttga
3661 agtgtttgcg gttcagactg ggaaagcata agcacctgta tattaatata tcgtccacct
3721 ggaggtgggc aaaccatgca agtgagaaag caattgtaac tgtgacattt gcaaatgagc
3781 ttcaaagaca acagttttta aacactgtaa aaataccttc tactgtaact ctgtcacaag
3841 gagtaatgac tgtgtagtgt gcattggcac acagggtttt gtattttttt ttttacaagt
3901 actgtttgta attaattttg tatattgact gtatattgaa ttgtggtgtg cattggcaca
3961 cagtggtctc atttcaagcc tgtacataca ttgaacagta tccaggtact gtgtaaagcc
4021 aattgttgct gctacgcttg taaaccgcca ccattctgct gtttctggtt gtgtttttgc
4081 tgctgttttt gcttggcctt gtgttttgtg cacttgttga gtcgctgctt ctgtgttttt
4141 ccggtatgcc tcagtgttgc tgcttatgct gttgttctgg gtgtccatag tgaacccgtt
4201 tgcagctttt ggtctgtgtt tgttttgttt tttaaccccg ttgcttttga tacacctgca
4261 tgccctcagt gtggtttaca gcagaatgat gtaaatactg cacatagaca tgttattatc
4321 agttattttg ctattgttgc tgttaatatt tactttgttt tggcactact tgttggtgct
4381 gcgtttaaag ccaccagcag ggcgcgcacg taaatgtaaa cagctgagac ggcggcgcag
4441 ataataaacg tcacacaata aagcgtcatg aagcatgcac acttgtcgcg gcgcaagcga
4501 gcagccccgc gcccacctgg tgggcggcaa aagcgtgcat ctgccacgca gctgtaccaa
4561 acctgcaagg cggcaggcac atgccccccc gatgttatcc ctaaggtgga aggcacaacc
4621 gtagcagatc aaattttaaa gtatggcagc atgggtgtat actttggggg tttgggcatt
4681 ggctctggtg ctggcacggg cggaagaagc ggctacgtgc ccctaggttc acgtcccgca
4741 tccattcccg agccgttgcc acgaccacca gtaacaattg agcctgtggg cccttccgat
4801 ccctccattg tgtcattgct ggaagagtcc agactaatag aggcaggtgt tccagccccc
4861 acattcccca ctcatggggg gtttgaaatt agcacatctg aagttagcac acccgctgtc
4921 ctggatgtgt ctagcggtgg ctctgatgtg cacgttagtg tgacctcctt tacaaaccct
4981 acctttactg agccatctgt gctgcgaccc ccgccccccg tagaggcgtc tggacgcctg
5041 gtaatctctg catcctctgt cagcacgcat agctacgaag aaatacccat ggacacattt
5101 gtaataactg gagaccacaa ctataacaca accagcacac ccattcctgg ttcacgtgcc
5161 cctgcacgac ttggtctata tggacgtgct acccagcaag tgcgggtggt ggatcctgca
5221 tttataacca cccctgcgcg actggtgaca tatgacaacc ctgcatatga gggtgtggac
5281 gatgccaccc tgcaattttc ccactctgac attcaccagc cgccagatcc tgacttcctt
5341 gacattgtgg cattgcacag gcccgccttg acctcacgta agggcaccgt gcgctttagc
5401 cgattaggcc agcgggcaac actaaccacg cgcagtggta agcgtattgg ggccaaggtg
5461 catttctatc atgacctcag tcccattgcc cctgcagaaa gcatcgagtt gcagcccctg
5521 tcatctcagg gagagctgta tgacatatat gcagatgtag acgggcaaga ggacgctgca
5581 gctgtggcta acaccccatt aaacagcaac agcagtggca ttgcaagccc ctggaacacc
5641 acagtgccac tcagtgcagg ggcggacgtg acgctgcagt ccggccccga cgtgtccctg
5701 gatgcaccag tggctgaatc gcctgtgcac cctggagtgc ctctaaggcc ttctgcacat
5761 attattctgt acgggggaga cttttatttg caccctagct acctcggtat tcgcaggaaa
5821 cgtaaacgca tgcacaattt cttttcagat gtctatgtgg cggcctagtg actccaaggt
5881 ctacctacca cctgtcctgt gtctaaggtg gtcagcacgg atgaatatgt ctctcgcaca
5941 agcatatact atcacgctgg cagttccaga cttctggctg ttggacatcc ctactatgct
6001 gtaaagaagg gcaacaacaa agtgtcagtg cccaaggttt ctggtttaca ataccgagtg
6061 tttcgagtgc gtttgcctga ccccaataag tttggccttc cagatgctaa cttttatgac
6121 cctaacacac agcgccttgt gtgggcctgt ttaggcgtgg aggtggggcg tggacagcca
6181 ctgggagtgg gcaccagtgg tcatccactg ctgaacaaac tagatgacac ggaaaatggc
6241 cctaaagtgg ccgggggaca aggagcagat aacagggaat gcgtgtcaat ggactacaag
6301 caaacacagc tgtgcatgct aggatgcaag ccccctgtgg gtgagcattg gggaaaagga
6361 aatccttgca ccactggcgc tgcaggtgac tgccctgcac ttgagcttgt taactcagtt
6421 atacaggatg gggacatggt tgatacaggg tatggcgcta tggactttaa tgcactgcag
6481 gccaacaaat cagatgttcc tatagacata tgcactagcg tgtgcaaata ccctgactat
6541 ttaaaaatgg catcagatcc ctatggcgac agcttgtttt tttacctgcg aagggagcaa
6601 atgtttgtca gacacctgtt taacagagct ggcacaatgg gtgacagtgt ccctgatgac
6661 ttgtatatta aaggcagtgg aagcaatgtc aagcttgcca gccacgtgtt ttaccccaca
6721 cctagtggct caatggtgac atctgatgcc caattattta acaagccata ctggttacag
6781 aaagcccagg gccataacaa tggcatctgt tggggcaacc aagtgttcct tactgtagtt
6841 gacaccacta ggagcacaaa catgacactg tgtgcatcca ctgcctccac agttactaca
6901 ccatataata atgagagttt taaagagtac ctgcgacatg tggaggagtt tgatttgcaa
6961 tttatatttc agctgtgcaa ggtaaccctg aacactgaag taatggccta catacacagc
7021 atggatgcca gcatactgga ggactggaac tttggtttgc agcctcctcc gtctggctcc
7081 ttgcaggaca cctataggtt tgtgacgtct gccgccatca cctgtcaaaa acctgcaccc
7141 cccaaagaaa aggaagaccc gttggctaag tatacctttt gggaggtgga tttaaaggaa
7201 aagttttctg cagatttaga ccaatttccc ttaggccgca aatttttgct gcaagctggc
7261 atgcgtgcac gccctaccct gcgcgccccc aaacgcacag cctcatctac ctcatcttcc
7321 agcccccgca aacgcaaacg caccaaacgc taacgttgct tatatttatg ttgttgtacc
7381 cagtgtgcat gatttatgta tgtgtgcatg ttgtacgtga ttttgtattt cctgtgttgt
7441 gcgtgtcact gttttgtgtt gttgcgtgag tgtgttgcac ttatgtgttt attaaagtat
7501 gcgtggtcgc acccgagtga gtaactgtgt gtgtccggcg tgtagtttct gtcacatgca
7561 tgcatgcaca cccaaacact gttgccactg cctttaacag cttgcctgct gcacttccat
7621 tttgaaccct tctccatttt ccctgcaaac cctccatttt atggtctcga ccggtttcgg
7681 tcgcgcttgg cacgcatttt gggcaaacaa aaccacaaca ctgctaatcc tctggcttcc
7741 tgcctctcct actgctgcat acctgtggtt gtgctttggc gctccctggt gactcactgt
7801 ctctgcaaac aaaaatttgc acacacactt aatccaaccc tctttgtaca aaatgctttt
7861 ggcagtacat ttctaagagt tactcatgct aattgcatag ttggccacaa tttcagggtt
7921 ggattgccaa tactatgtcc ttttaaatgt gattaatttt caaaatgttc ttgcaggtgt
7981 gtgtgaccgg gatcggtcaa actttcacaa gcatttttta tagtaa
//GenBank-Updates@genbank.bio.net (04/27/91)
LOCUS RPLCG 8026 bp ds-DNA VRL 27-APR-1991
DEFINITION Rhesus papillomavirus type 1, complete genome.
ACCESSION M60184 M37718
KEYWORDS complete genome.
SOURCE Rhesus papilloma virus type 1 DNA, isolated from Macaca mulatta.
ORGANISM Rhesus papillomavirus type 1
Viridae; ds-DNA nonenveloped viruses; Papovaviridae.
REFERENCE 1 (bases 1 to 8026)
AUTHORS Ostrow,R.S., LaBresh,K.V. and Faras,A.J.
TITLE Characterzation of the complete RhPV 1 genomic sequence and an
integration locus from a metastatic tumor
JOURNAL Virology 181, 424-429 (1991)
STANDARD simple staff_review
FEATURES Location/Qualifiers
CDS 22..597
/gene="E6"
/codon_start=22
CDS 594..935
/gene="E7"
/codon_start=594
CDS 941..2818
/gene="E1"
/codon_start=941
CDS 2757..3857
/gene="E2"
/codon_start=2757
CDS 3940..4410
/note="open reading frame"
/gene="E5"
/codon_start=3940
/partial
CDS 4468..5868
/gene="L2"
/codon_start=4468
CDS 6289..7353
/gene="L1"
/codon_start=6289
BASE COUNT 2118 a 1789 c 2067 g 2052 t
ORIGIN
1 tacttaacta tactcctgag tatgaaaaag ggtgtaaccg aaaacggtgc aaccgaaagc
61 ggtgcatata aaaagctcct gaaactttgg ttttttgtgg caatggtaga ctgccctggc
121 gagccaaacg aattgcccag gaccattcac gaactatgcg agcagcgtga ggagaccctg
181 cacgagcttc aattggagtg cgtgtattgc ctgaaggaac taacacgcat tgaggtatat
241 gattttgcac ggtgggattt aagattggtg catagacaag gcaagccata cggggtatgt
301 cccatatgct tgaggtttta ctcaaaaatt cgaaaatata ggcgatacga gtattcaata
361 tatgggtgta ctttagagcg tagaactaga aaacagttag tggaggtatt aataaggtgt
421 tattgttgtc agaagcccct gtgtcccatt gaaaagcaaa gacacgtgga ccaaggacaa
481 aggttccaca gaatagcggg acagtggacc ggaaggtgct tgatgtgctg gagaccaaca
541 gtacctgaga cccagccaga cactgatcaa cagggcagta gtttcttgca agcatgattg
601 ggcctaaacc taccctcgag gacattgtcc tagatttgca accatttcca caaccgcaac
661 cggtcgacct tatgtgttat gagcaattat ctgacagctc agaggatgag gatgaagtag
721 accatcatca caataatcag cagcagcatc atcagcacgc cagacctgaa gtaccagagg
781 atggtgattg ttatagaatt gtgagcgatt gttacagctg tggcaagcca ctgaggctgg
841 ttgtggttag tagccacgaa gagttacgtg tgctagagga cctgctgatg ggcacgcttg
901 acattgtgtg tcccagctgt gccagcagag tgtaactgca atggaccctg aaggtacacc
961 aggggaaggg gtggggtgta cggggtggtt taatgtggag gctatagtag aacgtaaaac
1021 gggggatgtg gtgtcagagg acgaagacga cacagaggat acagggatag atttggtaga
1081 ctttatagat gacacatgtg gaagtgtgca gacaggggac gaggcacctg gggcgttgtt
1141 gcacgcacag gaaacacaag cgcatgcaga ggcagtgcag gttttaaaac gaaagtttgt
1201 aggcagtccg gcagttagtc cgttgggaaa ctacaatccc tgtgtagaca gggatttaag
1261 tcccagatta aatgaaataa gtttaaacca aggcagcgga caggcaaaac ggagactgtt
1321 tttgccggac agcggttatg gcaatactga agtggaaacg tcgctattgc aggtagcagg
1381 ggggggcggc caggatgtac aggcaggggg gaaggaaaac acacggccag atgacggggg
1441 gggggatgcc acgcagctgc tccgttgcag caacttaaaa gccactttgc tgagtaaatt
1501 taaatctgtg tatggagtta gcttttcaga gttggtgcga agctttaaaa gcgacaggac
1561 cacgtgcgct gactgggtgg tgggggcagc gggggtccat catagcgtgg cagaggggtt
1621 aaagcagctc attcagcctt tttgcagtta tgcacacatc cagtgcctta catgcgactg
1681 gggggtgtac ctgctactgc tggcacggtt taagtgtggc aaaaacagac taacagtttc
1741 taaatgcatg agcacgctgt taaatgtgca agaaacgcac atgctaattg aaccaccgaa
1801 gctgcgtagc gcagcagcag ctctatactg gtacaggaca ggtatatcaa atgtaagtga
1861 agtaataggg gaaacacctg agtggattac aagacagaca atgtttcaac atggcctgga
1921 ggacagtata tttgatttgt ctgaaatggt gcagtgggca tacgaccacg actttacaga
1981 tgacagtgtg atagcgtacg agtatgcaca gctggcaggg atagacagca acgctgctgc
2041 atttttaaaa agtaatgcac aggccaaata tgtgaaggat tgtgccacta tgtgtaggca
2101 ctacaaaaga gccgaaaggc aacagatgac tatgtcacag tggataaaac aaaggtgtga
2161 aaaaactgat gatggagggg actggaggcc aatagtgcag tttttaaggt accaaggggt
2221 ggagtttata gcatttttag cagctttaaa gctgtttttg aagggcattc caaaaaaaaa
2281 ctgcatagtg ttatttggac cgccaaatac aggtaaatcc tactttggca tgagcttaat
2341 acatttcttg caagggtcta tcatttcata tgtaaattcc aacagtcact tttggttgca
2401 gcctctggca gatgctaagg tggccatgtt ggatgatgca actcctcagt gctggtccta
2461 tatagataat tatttaagga acgcactgga cgggaacccc attagtgttg atagaaaaca
2521 taaaaatctt gtacagatga agtgcccccc attgcttatt acctcaaaca ccaatgcagg
2581 tcaggatgac aggtggatgt atttgcacag tagaatggtt gtgtttacat ttgaacagcc
2641 atttccattt gatcagaacg gtaatccagt ttatgagtta aatgataaaa actggaaatc
2701 ctttttctca aggacatggt ccagattaga tttacaagag gaagaggaga cggaaaatga
2761 tggaagcact tgcagagcgt ttaagtgcgt tgcaggacag aatcttagaa ctgtatgaag
2821 ctgatagcaa ggacttaaaa gaccaaatag agcactggaa atgtgtgcgc caagaatgtg
2881 cagtgttgta taaggcacgg gaagtagggt tttcccacct gaaccatcag gtggtgccat
2941 cattaactgt gtcacgggct aaagcccaca aagcaattga agtgcagctg gcattagaga
3001 gtttacaaaa ttcggagtat aacaatgagg agtggacgct gcaagatgcc agcttggaga
3061 tgtggcacac agaacctaag ggatgcttca aaaaaacagg tgttccagta acagttttgt
3121 ttgactgtga caaagacaat accatggagt atgtgctgtg gggacacata tatgtgtggg
3181 gggacaatgg atgggtgaag acattcggtg aggcggacaa ctggggtctg cactataccg
3241 ttgctgggga aaaggtgtac tatgtgcagt tttatgagga tgctaaaaaa tatggacatg
3301 gaaatggaaa tggagatggc tatgagtggg aggtgcatgt tggtgggacg gtaatgcatt
3361 attctgactc tgtgtctagc gctacccact gcgacaaact acccactgtt gaaattgtta
3421 gcggactgca acacatcaac ccatcacccc cccccgccaa ccccagcgcc aaggaaaacg
3481 tgtggtcatc gcctgcaaag cgagtgcgtc ggtcagactc aggtggagat ccagtgcggg
3541 ccttggacgg taaaagccgg tcagtccttt gtggatctgc acacaacaac gctacaggga
3601 gttccggtga cagtgactat acgcctatag tgcacctaaa aggtgaatct aactgtttga
3661 agtgtttgcg gttcagactg ggaaagcata agcacctgta tattaatata tcgtccacct
3721 ggaggtgggc aaaccatgca agtgagaaag caattgtaac tgtgacattt gcaaatgagc
3781 ttcaaagaca acagttttta aacactgtaa aaataccttc tactgtaact ctgtcacaag
3841 gagtaatgac tgtgtagtgt gcattggcac acagggtttt gtattttttt ttttacaagt
3901 actgtttgta attaattttg tatattgact gtatattgaa ttgtggtgtg cattggcaca
3961 cagtggtctc atttcaagcc tgtacataca ttgaacagta tccaggtact gtgtaaagcc
4021 aattgttgct gctacgcttg taaaccgcca ccattctgct gtttctggtt gtgtttttgc
4081 tgctgttttt gcttggcctt gtgttttgtg cacttgttga gtcgctgctt ctgtgttttt
4141 ccggtatgcc tcagtgttgc tgcttatgct gttgttctgg gtgtccatag tgaacccgtt
4201 tgcagctttt ggtctgtgtt tgttttgttt tttaaccccg ttgcttttga tacacctgca
4261 tgccctcagt gtggtttaca gcagaatgat gtaaatactg cacatagaca tgttattatc
4321 agttattttg ctattgttgc tgttaatatt tactttgttt tggcactact tgttggtgct
4381 gcgtttaaag ccaccagcag ggcgcgcacg taaatgtaaa cagctgagac ggcggcgcag
4441 ataataaacg tcacacaata aagcgtcatg aagcatgcac acttgtcgcg gcgcaagcga
4501 gcagccccgc gcccacctgg tgggcggcaa aagcgtgcat ctgccacgca gctgtaccaa
4561 acctgcaagg cggcaggcac atgccccccc gatgttatcc ctaaggtgga aggcacaacc
4621 gtagcagatc aaattttaaa gtatggcagc atgggtgtat actttggggg tttgggcatt
4681 ggctctggtg ctggcacggg cggaagaagc ggctacgtgc ccctaggttc acgtcccgca
4741 tccattcccg agccgttgcc acgaccacca gtaacaattg agcctgtggg cccttccgat
4801 ccctccattg tgtcattgct ggaagagtcc agactaatag aggcaggtgt tccagccccc
4861 acattcccca ctcatggggg gtttgaaatt agcacatctg aagttagcac acccgctgtc
4921 ctggatgtgt ctagcggtgg ctctgatgtg cacgttagtg tgacctcctt tacaaaccct
4981 acctttactg agccatctgt gctgcgaccc ccgccccccg tagaggcgtc tggacgcctg
5041 gtaatctctg catcctctgt cagcacgcat agctacgaag aaatacccat ggacacattt
5101 gtaataactg gagaccacaa ctataacaca accagcacac ccattcctgg ttcacgtgcc
5161 cctgcacgac ttggtctata tggacgtgct acccagcaag tgcgggtggt ggatcctgca
5221 tttataacca cccctgcgcg actggtgaca tatgacaacc ctgcatatga gggtgtggac
5281 gatgccaccc tgcaattttc ccactctgac attcaccagc cgccagatcc tgacttcctt
5341 gacattgtgg cattgcacag gcccgccttg acctcacgta agggcaccgt gcgctttagc
5401 cgattaggcc agcgggcaac actaaccacg cgcagtggta agcgtattgg ggccaaggtg
5461 catttctatc atgacctcag tcccattgcc cctgcagaaa gcatcgagtt gcagcccctg
5521 tcatctcagg gagagctgta tgacatatat gcagatgtag acgggcaaga ggacgctgca
5581 gctgtggcta acaccccatt aaacagcaac agcagtggca ttgcaagccc ctggaacacc
5641 acagtgccac tcagtgcagg ggcggacgtg acgctgcagt ccggccccga cgtgtccctg
5701 gatgcaccag tggctgaatc gcctgtgcac cctggagtgc ctctaaggcc ttctgcacat
5761 attattctgt acgggggaga cttttatttg caccctagct acctcggtat tcgcaggaaa
5821 cgtaaacgca tgcacaattt cttttcagat gtctatgtgg cggcctagtg actccaaggt
5881 ctacctacca cctgtcctgt gtctaaggtg gtcagcacgg atgaatatgt ctctcgcaca
5941 agcatatact atcacgctgg cagttccaga cttctggctg ttggacatcc ctactatgct
6001 gtaaagaagg gcaacaacaa agtgtcagtg cccaaggttt ctggtttaca ataccgagtg
6061 tttcgagtgc gtttgcctga ccccaataag tttggccttc cagatgctaa cttttatgac
6121 cctaacacac agcgccttgt gtgggcctgt ttaggcgtgg aggtggggcg tggacagcca
6181 ctgggagtgg gcaccagtgg tcatccactg ctgaacaaac tagatgacac ggaaaatggc
6241 cctaaagtgg ccgggggaca aggagcagat aacagggaat gcgtgtcaat ggactacaag
6301 caaacacagc tgtgcatgct aggatgcaag ccccctgtgg gtgagcattg gggaaaagga
6361 aatccttgca ccactggcgc tgcaggtgac tgccctgcac ttgagcttgt taactcagtt
6421 atacaggatg gggacatggt tgatacaggg tatggcgcta tggactttaa tgcactgcag
6481 gccaacaaat cagatgttcc tatagacata tgcactagcg tgtgcaaata ccctgactat
6541 ttaaaaatgg catcagatcc ctatggcgac agcttgtttt tttacctgcg aagggagcaa
6601 atgtttgtca gacacctgtt taacagagct ggcacaatgg gtgacagtgt ccctgatgac
6661 ttgtatatta aaggcagtgg aagcaatgtc aagcttgcca gccacgtgtt ttaccccaca
6721 cctagtggct caatggtgac atctgatgcc caattattta acaagccata ctggttacag
6781 aaagcccagg gccataacaa tggcatctgt tggggcaacc aagtgttcct tactgtagtt
6841 gacaccacta ggagcacaaa catgacactg tgtgcatcca ctgcctccac agttactaca
6901 ccatataata atgagagttt taaagagtac ctgcgacatg tggaggagtt tgatttgcaa
6961 tttatatttc agctgtgcaa ggtaaccctg aacactgaag taatggccta catacacagc
7021 atggatgcca gcatactgga ggactggaac tttggtttgc agcctcctcc gtctggctcc
7081 ttgcaggaca cctataggtt tgtgacgtct gccgccatca cctgtcaaaa acctgcaccc
7141 cccaaagaaa aggaagaccc gttggctaag tatacctttt gggaggtgga tttaaaggaa
7201 aagttttctg cagatttaga ccaatttccc ttaggccgca aatttttgct gcaagctggc
7261 atgcgtgcac gccctaccct gcgcgccccc aaacgcacag cctcatctac ctcatcttcc
7321 agcccccgca aacgcaaacg caccaaacgc taacgttgct tatatttatg ttgttgtacc
7381 cagtgtgcat gatttatgta tgtgtgcatg ttgtacgtga ttttgtattt cctgtgttgt
7441 gcgtgtcact gttttgtgtt gttgcgtgag tgtgttgcac ttatgtgttt attaaagtat
7501 gcgtggtcgc acccgagtga gtaactgtgt gtgtccggcg tgtagtttct gtcacatgca
7561 tgcatgcaca cccaaacact gttgccactg cctttaacag cttgcctgct gcacttccat
7621 tttgaaccct tctccatttt ccctgcaaac cctccatttt atggtctcga ccggtttcgg
7681 tcgcgcttgg cacgcatttt gggcaaacaa aaccacaaca ctgctaatcc tctggcttcc
7741 tgcctctcct actgctgcat acctgtggtt gtgctttggc gctccctggt gactcactgt
7801 ctctgcaaac aaaaatttgc acacacactt aatccaaccc tctttgtaca aaatgctttt
7861 ggcagtacat ttctaagagt tactcatgct aattgcatag ttggccacaa tttcagggtt
7921 ggattgccaa tactatgtcc ttttaaatgt gattaatttt caaaatgttc ttgcaggtgt
7981 gtgtgaccgg gatcggtcaa actttcacaa gcatttttta tagtaa
//